Display options
Share it on

Front Pharmacol. 2021 Apr 28;12:634016. doi: 10.3389/fphar.2021.634016. eCollection 2021.

The Extent and Impact of Variation in ADME Genes in Sub-Saharan African Populations.

Frontiers in pharmacology

Jorge E B da Rocha, Houcemeddine Othman, Gerrit Botha, Laura Cottino, David Twesigomwe, Samah Ahmed, Britt I Drögemöller, Faisal M Fadlelmola, Philip Machanick, Mamana Mbiyavanga, Sumir Panji, Galen E B Wright, Clement Adebamowo, Mogomotsi Matshaba, Michéle Ramsay, Gustave Simo, Martin C Simuunza, Caroline T Tiemessen, Sandra Baldwin, Mathias Chiano, Charles Cox, Annette S Gross, Pamela Thomas, Francisco-Javier Gamo, Scott Hazelhurst

Affiliations

  1. Sydney Brenner Institute for Molecular Bioscience (SBIMB), Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
  2. Division of Human Genetics, National Health Laboratory Service and School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
  3. Computational Biology Division and H3ABioNet, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa.
  4. Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, Khartoum, Sudan.
  5. Department of Biochemistry and Medical Genetics, University of Manitoba, Winnipeg, MB, Canada.
  6. Department of Computer Science, Rhodes University, Makhanda, South Africa.
  7. Neuroscience Research Program, Winnipeg Health Sciences Centre and Max Rady College of Medicine, Kleysen for Advanced Medicine, University of Manitoba, Winnipeg, MB, Canada.
  8. Department of Pharmacology and Therapeutics, Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, MB, Canada.
  9. Institute for Human Virology, Abuja, Nigeria.
  10. Institute of Human Virology and Greenebaum Comprehensive Cancer Center, University of Maryland School of Medicine, Baltimore, MD, United States.
  11. Botswana-Baylor Children's Clinical Center of Excellence, Gaborone, Botswana.
  12. Baylor College of Medicine, Houston, TX, United States.
  13. Molecular Parasitology and Entomology Unit, Department of Biochemistry, Faculty of Science, University of Dschang, Dschang, Cameroon.
  14. Department of Disease Control, School of Veterinary Medicine, University of Zambia, Lusaka, Zambia.
  15. Centre for HIV and STIs, National Institute for Communicable Diseases, National Health Laboratory Services and Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
  16. Drug Metabolism and Pharmacokinetics, GlaxoSmithKline R&D, Ware, United Kingdom.
  17. Human Genetics, GlaxoSmithKline R&D, Stevenage, United Kingdom.
  18. Clinical Pharmacology Modelling and Simulation, GlaxoSmithKline R&D, Sydney, NSW, Australia.
  19. Data and Computational Sciences, GlaxoSmithKline R&D, Stevenage, United Kingdom.
  20. Global Health, GlaxoSmithKline R&D, Tres Cantos, Madrid, Spain.
  21. School of Electrical and Information Engineering, University of the Witwatersrand, Johannesburg, South Africa.

PMID: 34721006 PMCID: PMC8549571 DOI: 10.3389/fphar.2021.634016

[No abstract available.]

Copyright © 2021 da Rocha, Othman, Botha, Cottino, Twesigomwe, Ahmed, Drögemöller, Fadlelmola, Machanick, Mbiyavanga, Panji, Wright, Adebamowo, Matshaba, Ramsay, Simo, Simuunza, Tiemessen, Baldwin, Chiano, Cox, Gross, Thomas, Gamo and Hazelhurst.

Keywords: ADME; Africa; CNV; genetic diversity; pharmacogenomics

Conflict of interest statement

GlaxoSmithKline provided funding for this project. The authors SB, MC, CC, ASG, PT and FJG are all employees of GlaxoSmithKline and participated in the analysis and writing of the paper. GlaxoSmithKli

References

  1. Science. 2018 Feb 23;359(6378):915-919 - PubMed
  2. Nat Genet. 2015 Mar;47(3):296-303 - PubMed
  3. Pharmgenomics Pers Med. 2013 Sep 18;6:105-12 - PubMed
  4. Lancet. 2019 Aug 10;394(10197):521-532 - PubMed
  5. Pharmacogenomics J. 2018 Jan;18(1):187-195 - PubMed
  6. Pharmgenomics Pers Med. 2018 Mar 07;11:23-33 - PubMed
  7. Nat Commun. 2017 Dec 12;8(1):2062 - PubMed
  8. Nature. 2015 Oct 1;526(7571):68-74 - PubMed
  9. BMC Genet. 2010 Dec 09;11:108 - PubMed
  10. Science. 2012 Jul 6;337(6090):64-9 - PubMed
  11. Bioinformatics. 2007 Jul 15;23(14):1801-6 - PubMed
  12. J Pediatr. 2007 Jun;150(6):623-6 - PubMed
  13. Nat Commun. 2015 Aug 21;6:8018 - PubMed
  14. Nature. 2015 Jan 15;517(7534):327-32 - PubMed
  15. Nature. 2010 Oct 28;467(7319):1061-73 - PubMed
  16. NPJ Genom Med. 2020 Aug 3;5:30 - PubMed
  17. Nucleic Acids Res. 2001 Jan 1;29(1):308-11 - PubMed
  18. Arch Biochem Biophys. 2007 Aug 15;464(2):197-206 - PubMed
  19. Nat Struct Mol Biol. 2017 Jan 5;24(1):13-14 - PubMed
  20. Genome Biol. 2016 Jun 06;17(1):122 - PubMed
  21. PLoS One. 2017 Aug 3;12(8):e0182138 - PubMed
  22. Science. 2012 Oct 19;338(6105):374-9 - PubMed
  23. Gigascience. 2015 Feb 25;4:7 - PubMed
  24. BMC Bioinformatics. 2013;14 Suppl 11:S1 - PubMed
  25. Science. 2014 Jun 20;344(6190):1346-8 - PubMed
  26. Nature. 2016 Aug 17;536(7616):285-91 - PubMed
  27. Malar J. 2018 Mar 20;17(1):120 - PubMed
  28. Pharmacogenet Genomics. 2017 Mar;27(3):89-100 - PubMed
  29. Nature. 2016 Oct 13;538(7624):201-206 - PubMed
  30. Nature. 2020 Jan;577(7789):179-189 - PubMed
  31. Expert Opin Drug Metab Toxicol. 2014 Jun;10(6):769-85 - PubMed
  32. Bioinformatics. 2011 Nov 1;27(21):2987-93 - PubMed
  33. Genome Res. 2014 Nov;24(11):1734-9 - PubMed
  34. BMC Genomics. 2009 Jan 14;10:22 - PubMed
  35. Clin Pharmacol Ther. 2012 Oct;92(4):414-7 - PubMed
  36. Fly (Austin). 2012 Apr-Jun;6(2):80-92 - PubMed
  37. Per Med. 2020 Mar;17(2):155-170 - PubMed
  38. Br J Clin Pharmacol. 1996 Dec;42(6):713-9 - PubMed
  39. Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12757-12762 - PubMed
  40. Pharmacogenomics. 2018 Dec;19(18):1373-1375 - PubMed
  41. AIDS. 2014 Aug 24;28(13):1855-7 - PubMed
  42. Hum Mutat. 2016 Mar;37(3):235-41 - PubMed
  43. Genome Res. 2009 Sep;19(9):1655-64 - PubMed
  44. Am J Hum Genet. 2016 Oct 6;99(4):791-801 - PubMed
  45. Nat Genet. 2017 Oct 27;49(11):1560-1563 - PubMed
  46. Pharmacogenomics J. 2019 Apr;19(2):115-126 - PubMed
  47. Elife. 2016 Jun 21;5: - PubMed

Publication Types