Display options
Cite
Monteiro DCF, Amoah E, Rogers C, et al. Using photocaging for fast time-resolved structural biology studies. Acta Crystallogr D Struct Biol. 2021;77:1218-1232doi: 10.1107/S2059798321008809.
Monteiro, D. C. F., Amoah, E., Rogers, C., & Pearson, A. R. (2021). Using photocaging for fast time-resolved structural biology studies. Acta crystallographica. Section D, Structural biology, 771218-1232. https://doi.org/10.1107/S2059798321008809
Monteiro, Diana C F, et al. "Using photocaging for fast time-resolved structural biology studies." Acta crystallographica. Section D, Structural biology vol. 77 (2021): 1218-1232. doi: https://doi.org/10.1107/S2059798321008809
Monteiro DCF, Amoah E, Rogers C, Pearson AR. Using photocaging for fast time-resolved structural biology studies. Acta Crystallogr D Struct Biol. 2021 Oct 01;77:1218-1232. doi: 10.1107/S2059798321008809. Epub 2021 Sep 22. PMID: 34605426; PMCID: PMC8489231.
Copy Download .nbib Format: NLM
Share it on

Acta Crystallogr D Struct Biol. 2021 Oct 01;77:1218-1232. doi: 10.1107/S2059798321008809. Epub 2021 Sep 22.

Using photocaging for fast time-resolved structural biology studies.

Acta crystallographica. Section D, Structural biology

Diana C F Monteiro, Emmanuel Amoah, Cromarte Rogers, Arwen R Pearson

Affiliations

  1. Hauptman-Woodward Medical Research Institute, 700 Ellicot Street, Buffalo, NY 14203, USA.
  2. The Hamburg Centre for Ultrafast Imaging, Universität Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany.

PMID: 34605426 PMCID: PMC8489231 DOI: 10.1107/S2059798321008809

Abstract

Careful selection of photocaging approaches is critical to achieve fast and well synchronized reaction initiation and perform successful time-resolved structural biology experiments. This review summarizes the best characterized and most relevant photocaging groups previously described in the literature. It also provides a walkthrough of the essential factors to consider in designing a suitable photocaged molecule to address specific biological questions, focusing on photocaging groups with well characterized spectroscopic properties. The relationships between decay rates (k in s

open access.

Keywords: photocages; reaction initiation; serial crystallography; time-resolved structural biology

References

  1. Methods Enzymol. 1998;291:223-45 - PubMed
  2. Nature. 2011 Feb 3;470(7332):73-7 - PubMed
  3. Chem Rev. 2013 Jan 9;113(1):119-91 - PubMed
  4. Nat Commun. 2020 Feb 6;11(1):741 - PubMed
  5. J Mater Chem B. 2020 Aug 12;8(31):6964-6974 - PubMed
  6. Nature. 1987 Sep 10-16;329(6135):178-81 - PubMed
  7. Chem Rev. 2001 Jun;101(6):1569-81 - PubMed
  8. Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):178-191 - PubMed
  9. Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):5982-7 - PubMed
  10. J Biol Chem. 1995 Mar 31;270(13):7745-9 - PubMed
  11. Chem Rev. 2013 Aug 14;113(8):6114-78 - PubMed
  12. Nat Methods. 2006 Jan;3(1):35-40 - PubMed
  13. Nat Methods. 2020 Jul;17(7):681-684 - PubMed
  14. J Appl Crystallogr. 2016 May 23;49(Pt 3):968-975 - PubMed
  15. J Am Chem Soc. 2002 Oct 16;124(41):12165-73 - PubMed
  16. Angew Chem Int Ed Engl. 2015 Oct 26;54(44):13027-31 - PubMed
  17. Nat Commun. 2017 Nov 17;8(1):1585 - PubMed
  18. Proc Natl Acad Sci U S A. 2021 May 25;118(21): - PubMed
  19. Chem Commun (Camb). 2018 Feb 1;54(11):1280-1290 - PubMed
  20. Biochemistry. 1978 May 16;17(10):1929-35 - PubMed
  21. Chem Sci. 2020 Jul 31;11(32):8457-8468 - PubMed
  22. Philos Trans A Math Phys Eng Sci. 2019 Jun 17;377(2147):20180243 - PubMed
  23. Science. 2018 Jul 13;361(6398): - PubMed
  24. Photochem Photobiol Sci. 2009 Aug;8(8):1150-6 - PubMed
  25. Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):8752-6 - PubMed
  26. Nat Struct Biol. 1998 Aug;5 Suppl:641-3 - PubMed
  27. Angew Chem Int Ed Engl. 2001 Mar 16;40(6):1045-1048 - PubMed
  28. IUCrJ. 2017 May 24;4(Pt 4):439-454 - PubMed
  29. Science. 1989 Sep 29;245(4925):1463-73 - PubMed
  30. IUCrJ. 2021 Jun 30;8(Pt 4):532-543 - PubMed
  31. Angew Chem Int Ed Engl. 2006 Jul 24;45(30):4900-21 - PubMed
  32. Biochemistry. 2000 May 9;39(18):5500-8 - PubMed
  33. J Am Chem Soc. 2016 Jul 20;138(28):8815-23 - PubMed
  34. J Phys D Appl Phys. 2017 Sep 20;50(37): - PubMed
  35. Nat Commun. 2016 Feb 04;7:10622 - PubMed
  36. Nat Commun. 2015 Apr 02;6:6772 - PubMed
  37. Chembiochem. 2016 Feb 15;17(4):296-9 - PubMed
  38. Methods Enzymol. 1998;291:50-63 - PubMed
  39. J Struct Biol. 2020 Dec 1;212(3):107624 - PubMed
  40. IUCrJ. 2020 Jan 16;7(Pt 2):207-219 - PubMed
  41. Org Biomol Chem. 2018 Nov 14;16(44):8434-8445 - PubMed
  42. J Am Chem Soc. 2016 May 11;138(18):5848-59 - PubMed
  43. Struct Dyn. 2017 Jan 31;4(3):032201 - PubMed
  44. Inorg Chem. 2008 Jul 7;47(13):5625-33 - PubMed
  45. J Biol Chem. 1999 Jul 23;274(30):20895-900 - PubMed
  46. Acc Chem Res. 2017 Aug 15;50(8):1956-1964 - PubMed
  47. Proc Natl Acad Sci U S A. 1988 Sep;85(17):6571-5 - PubMed
  48. Photochem Photobiol Sci. 2009 Apr;8(4):499-512 - PubMed
  49. J Synchrotron Radiat. 2019 Mar 1;26(Pt 2):406-412 - PubMed
  50. Nat Chem. 2018 Jan;10(1):31-37 - PubMed
  51. Biophys J. 1996 Feb;70(2):1006-16 - PubMed
  52. J Inorg Biochem. 2010 Dec;104(12):1248-51 - PubMed
  53. Science. 2003 Jun 20;300(5627):1944-7 - PubMed
  54. Sci Signal. 2015 Mar 10;8(367):ra26 - PubMed
  55. Proc Natl Acad Sci U S A. 1999 Feb 16;96(4):1193-200 - PubMed
  56. Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):4924-9 - PubMed
  57. Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130318 - PubMed
  58. Inorg Chem. 2020 Jan 21;59(2):1006-1013 - PubMed
  59. Chembiochem. 2003 Mar 3;4(2-3):162-70 - PubMed
  60. Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19256-61 - PubMed
  61. Chem Sci. 2019 Jan 10;10(9):2687-2692 - PubMed
  62. Nature. 2014 Sep 11;513(7517):261-5 - PubMed
  63. Angew Chem Int Ed Engl. 2005 Dec 9;44(48):7887-91 - PubMed
  64. Biochemistry. 2000 Feb 29;39(8):2063-70 - PubMed
  65. Nat Chem. 2019 Nov;11(11):1058-1066 - PubMed
  66. Nat Methods. 2018 Nov;15(11):901-904 - PubMed
  67. Annu Rev Biophys Bioeng. 1977;6:301-43 - PubMed
  68. Chemistry. 2006 Sep 6;12(26):6865-79 - PubMed
  69. Struct Dyn. 2016 Aug 29;3(5):054301 - PubMed
  70. Commun Biol. 2019 Jan 3;2:1 - PubMed
  71. IUCrJ. 2018 Sep 13;5(Pt 6):667-672 - PubMed
  72. Chembiochem. 2006 Jun;7(6):868-78 - PubMed
  73. J Am Chem Soc. 2013 Jun 26;135(25):9407-11 - PubMed
  74. Elife. 2020 Mar 31;9: - PubMed
  75. J Am Chem Soc. 2019 Jul 31;141(30):12100-12108 - PubMed
  76. Nat Chem Biol. 2005 Dec;1(7):360-5 - PubMed
  77. Curr Opin Struct Biol. 2012 Oct;22(5):651-9 - PubMed
  78. Phys Chem Chem Phys. 2019 Feb 20;21(8):4461-4471 - PubMed
  79. Cell Calcium. 2005 Jun;37(6):565-72 - PubMed
  80. Eur J Biochem. 2002 May;269(10):2630-7 - PubMed
  81. Curr Opin Struct Biol. 2015 Dec;35:41-8 - PubMed
  82. Chem Sci. 2018 Feb 9;9(10):2797-2802 - PubMed
  83. Science. 2010 Apr 30;328(5978):630-3 - PubMed
  84. Nat Chem Biol. 2006 Jan;2(1):47-52 - PubMed
  85. Nat Chem Biol. 2015 Dec;11(12):895-9 - PubMed
  86. IUCrJ. 2017 Oct 09;4(Pt 6):769-777 - PubMed
  87. Methods Enzymol. 2008;437:379-95 - PubMed
  88. Nat Commun. 2014 Apr 30;5:3762 - PubMed
  89. Spectrochim Acta A Mol Biomol Spectrosc. 2016 Dec 5;169:175-81 - PubMed
  90. Science. 2016 May 6;352(6286):725-9 - PubMed

Publication Types

Grant support