S Ou, W Su, Y Liao, K Chougule… - Genome …, 2019 - genomebiology.biomedcentral.com

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline.

pipeline programs

Ou, Su, Liao, Chougule

GSID: Hdtgurt8_KAJ

Excerpt

… We benchmark existing programs based on a carefully curated library of rice TEs. We evaluate the performance of methods annotating long … Using the most robust programs, we create a comprehensive pipeline called Extensive de-novo TE Annotator (EDTA) that produces a …

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