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Sun, Z., Baheti, S., Middha, S., Kanwar, R., Zhang, Y., Li, X., ... & Kocher, J. P. A. (2012). SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing. Bioinformatics, 28(16), 2180-2181.
Sun, Zhifu, et al. "SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing." Bioinformatics 28.16 (2012): 2180-2181.
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Z Sun, S Baheti, S Middha, R Kanwar, Y Zhang… - …, 2012 - academic.oup.com

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

pipeline programs

Sun, Baheti, Middha, Kanwar, Zhang

GSID: 7X6GWoKIRfsJ

Excerpt

… BSMAP version 2.43 is integrated into the pipeline as the default aligner. For RRBS, -D C-CGG option is turned on for RRBSMAP … We have compared RRBSMAP with three other alignment programs using simulated and real data, and the results are presented in Supplementary …

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