AM Brown, E Bolyen, I Raspet, JA Altin… - arXiv preprint arXiv …, 2022 - arxiv.org

PepSIRF+ QIIME 2: software tools for automated, reproducible analysis of highly-multiplexed serology data.

Louis Stokes Alliances for Minority Participation AND Program Evaluation

Altin, Bolyen

GSID: noO1UhP7SDIJ

Excerpt

PepSIRF is a command-line, module-based open-source software package that facilitates the analysis of data from highly-multiplexed serology assays (eg, PepSeq or PhIP-Seq). It has nine separate modules in its current release (v1. 5.0): demux, info, subjoin, norm, bin, zscore, enrich, link, and deconv. These modules can be used together to conduct analyses ranging from demultiplexing raw high-throughput sequencing data to the identification of enriched peptides. QIIME 2 is an open-source, community-developed and plugin-based …