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Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data

pipeline programs

Baheti S, Kanwar R.
S Baheti, R Kanwar… - BMC …, 2016 -

DNA methylation is an important epigenetic modification involved in many biological processes. Reduced representation bisulfite sequencing (RRBS) is a cost-effective method …

Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males

STEM and males

[No authors listed]
GSID: RjnLmmuMBgkJ
O El-Maarri, T Becker, J Junen, SS Manzoor… - Human genetics, 2007 - Springer

… The significance of the differences at Line-1 was higher in the first cohort of the 96 males and 96 females than in the subgroup of 48 males and 48 females. This was specially noticeable …

Effects of BPA and BPS exposure limited to early embryogenesis persist to impair non-associative learning in adults

EPSCoR Research Infrastructure Improvement Program AND Program Evaluation

Patel BM.
GSID: sllWatIi-sQJ
MD Mersha, BM Patel, D Patel… - Behavioral …, 2015 - behavioralandbrainfunctions …

Bisphenol-A (BPA) is a polymerizing agent used in plastic bottles and several routinely used consumer items. It is classified among endocrine disrupting chemicals suspected to cause adverse health effects in mammals ranging from infertility and cancer to behavioral disorders....

Cooperative diversity in wireless networks: Efficient protocols and outage behavior


Laneman JN, Tse DNC.
JN Laneman, DNC Tse… - IEEE Transactions on …, 2004 -

We develop and analyze low-complexity cooperative diversity protocols that combat fading induced by multipath propagation in wireless networks. The underlying techniques exploit …

Socioeconomic position during pregnancy and DNA methylation signatures at three stages across early life: epigenome-wide association studies in the ALSPAC birth …

discipline specific-education (e.g., chemistry education, biology education, economics education)

Galobardes B, Guida F.
R Alfano, F Guida, B Galobardes… - International journal …, 2019 -

Background Socioeconomic experiences are recognized determinants of health, and recent work has shown that social disadvantages in early life may induce sustained biological …

Deblur rapidly resolves single-nucleotide community sequence patterns


Kopylova E, McDonald D, Navas-Molina JA.
A Amir, D McDonald, JA Navas-Molina, E Kopylova… - …, 2017 - Am Soc Microbiol

High-throughput sequencing of 16S ribosomal RNA gene amplicons has facilitated understanding of complex microbial communities, but the inherent noise in PCR and DNA

Community annotation and bioinformatics workforce development in concert—Little Skate Genome Annotation Workshops and Jamborees

EPSCoR Research Infrastructure Improvement Program AND Program Evaluation

Arighi CN, King BL, Polson SW, Wang Q.
Q Wang, CN Arighi, BL King, SW Polson, J Vincent… - Database, 2012 -

Recent advances in high-throughput DNA sequencing technologies have equipped biologists with a powerful new set of tools for advancing research goals. The resulting flood of sequence data has made it critically important to train the next generation of scientists...

System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals

program design

Demko Z.
M Rabinowitz, M Banjevic, Z Demko… - US Patent App. 14 …, 2014 - Google Patents

A system and method for determining the genetic data for one or a small set of cells, or from fragmentary DNA, where a limited quantity of genetic data is available, are disclosed …

High‐throughput microsatellite isolation through 454 GS‐FLX Titanium pyrosequencing of enriched DNA libraries

program design

Malausa T.
T Malausa, A Gilles, E Meglécz… - Molecular Ecology …, 2011 - Wiley Online Library

Microsatellites (or SSRs: simple sequence repeats) are among the most frequently used DNA markers in many areas of research. The use of microsatellite markers is limited by the …

Molecular techniques in the assessment of botanical diversity


[No authors listed]
A Karp, OLE Seberg, M Buiatti - Annals of Botany, 1996 - Elsevier

… The term ‘botanical diversity’ conjures up many different images. To some it brings to mind complex natural ecosystems, such as rain … of diversity which may be investigated using a variety of different DNA technologies. Traditional approaches to...

New insights into the diversity of marine picoeukaryotes


Not F, del J.
F Not, J del Campo, V Balagué, C de Vargas… - PloS one, 2009 -

… diversity based on 18S ribosomal DNA clone libraries have unveiled numerous sequences of novel high-rank taxa. This newfound diversity … High protistan diversity in the

A communal catalogue reveals Earth's multiscale microbial diversity


Thompson LR, Sanders JG, McDonald D.
GSID: 9pWmwzvbdlQJ
LR Thompson, JG Sanders, D McDonald, A Amir… - Nature, 2017 -

Our growing awareness of the microbial world’s importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes …

Showing 1 to 12 of 149757 entries