pipeline programs
Baheti S, Kanwar R.
GSID: NfVSroXD87IJ
S Baheti, R Kanwar… - BMC …, 2016 - bmcgenomics.biomedcentral.com
DNA methylation is an important epigenetic modification involved in many biological processes. Reduced representation bisulfite sequencing (RRBS) is a cost-effective method …
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Baheti, S., Kanwar, R., Goelzenleuchter, M., Kocher, J. P. A., Beutler, A. S., & Sun, Z. (2016). Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data. BMC genomics, 17(1), 1-8.
Baheti, Saurabh, et al. "Targeted alignment and end repair elimination increase alignment and methylation measure accuracy for reduced representation bisulfite sequencing data." BMC genomics 17.1 (2016): 1-8.
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STEM and males
[No authors listed]
GSID: RjnLmmuMBgkJ
O El-Maarri, T Becker, J Junen, SS Manzoor… - Human genetics, 2007 - Springer
… The significance of the differences at Line-1 was higher in the first cohort of the 96 males and 96 females than in the subgroup of 48 males and 48 females. This was specially noticeable …
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El-Maarri, O., Becker, T., Junen, J., Manzoor, S. S., Diaz-Lacava, A., Schwaab, R., ... & Oldenburg, J. (2007). Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males. Human genetics, 122(5), 505-514.
El-Maarri, Osman, et al. "Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males." Human genetics 122.5 (2007): 505-514.
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EPSCoR Research Infrastructure Improvement Program AND Program Evaluation
Patel BM.
GSID: sllWatIi-sQJ
MD Mersha, BM Patel, D Patel… - Behavioral …, 2015 - behavioralandbrainfunctions …
Bisphenol-A (BPA) is a polymerizing agent used in plastic bottles and several routinely used consumer items. It is classified among endocrine disrupting chemicals suspected to cause adverse health effects in mammals ranging from infertility and cancer to behavioral disorders....
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Mersha, M. D., Patel, B. M., Patel, D., Richardson, B. N., & Dhillon, H. S. (2015). Effects of BPA and BPS exposure limited to early embryogenesis persist to impair non-associative learning in adults. Behavioral and Brain Functions, 11(1), 1-5.
Mersha, Mahlet D., et al. "Effects of BPA and BPS exposure limited to early embryogenesis persist to impair non-associative learning in adults." Behavioral and Brain Functions 11.1 (2015): 1-5.
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diversity
Laneman JN, Tse DNC.
GSID: HH6KVlmTo8IJ
JN Laneman, DNC Tse… - IEEE Transactions on …, 2004 - ieeexplore.ieee.org
We develop and analyze low-complexity cooperative diversity protocols that combat fading induced by multipath propagation in wireless networks. The underlying techniques exploit …
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Laneman, J. N., Tse, D. N., & Wornell, G. W. (2004). Cooperative diversity in wireless networks: Efficient protocols and outage behavior. IEEE Transactions on Information theory, 50(12), 3062-3080.
Laneman, J. Nicholas, David NC Tse, and Gregory W. Wornell. "Cooperative diversity in wireless networks: Efficient protocols and outage behavior." IEEE Transactions on Information theory 50.12 (2004): 3062-3080.
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discipline specific-education (e.g., chemistry education, biology education, economics education)
Galobardes B, Guida F.
GSID: kthFC5FCQGMJ
R Alfano, F Guida, B Galobardes… - International journal …, 2019 - academic.oup.com
Background Socioeconomic experiences are recognized determinants of health, and recent work has shown that social disadvantages in early life may induce sustained biological …
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Alfano, R., Guida, F., Galobardes, B., Chadeau-Hyam, M., Delpierre, C., Ghantous, A., ... & Plusquin, M. (2019). Socioeconomic position during pregnancy and DNA methylation signatures at three stages across early life: epigenome-wide association studies in the ALSPAC birth cohort. International journal of epidemiology, 48(1), 30-44.
Alfano, Rossella, et al. "Socioeconomic position during pregnancy and DNA methylation signatures at three stages across early life: epigenome-wide association studies in the ALSPAC birth cohort." International journal of epidemiology 48.1 (2019): 30-44.
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diversity
Kopylova E, McDonald D, Navas-Molina JA.
GSID: GMeTV1xgRdIJ
A Amir, D McDonald, JA Navas-Molina, E Kopylova… - …, 2017 - Am Soc Microbiol
High-throughput sequencing of 16S ribosomal RNA gene amplicons has facilitated understanding of complex microbial communities, but the inherent noise in PCR and DNA …
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Amir, A., McDonald, D., Navas-Molina, J. A., Kopylova, E., Morton, J. T., Zech Xu, Z., ... & Knight, R. (2017). Deblur rapidly resolves single-nucleotide community sequence patterns. MSystems, 2(2), e00191-16.
Amir, Amnon, et al. "Deblur rapidly resolves single-nucleotide community sequence patterns." MSystems 2.2 (2017): e00191-16.
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EPSCoR Research Infrastructure Improvement Program AND Program Evaluation
Arighi CN, King BL, Polson SW, Wang Q.
GSID: wcLXvSCVsRkJ
Q Wang, CN Arighi, BL King, SW Polson, J Vincent… - Database, 2012 - academic.oup.com
Recent advances in high-throughput DNA sequencing technologies have equipped biologists with a powerful new set of tools for advancing research goals. The resulting flood of sequence data has made it critically important to train the next generation of scientists...
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Wang, Q., Arighi, C. N., King, B. L., Polson, S. W., Vincent, J., Chen, C., ... & North East Bioinformatics Collaborative Curation Team. (2012). Community annotation and bioinformatics workforce development in concert—Little Skate Genome Annotation Workshops and Jamborees. Database, 2012.
Wang, Qinghua, et al. "Community annotation and bioinformatics workforce development in concert—Little Skate Genome Annotation Workshops and Jamborees." Database 2012 (2012).
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program design
Demko Z.
GSID: sVm_gOMFrvQJ
M Rabinowitz, M Banjevic, Z Demko… - US Patent App. 14 …, 2014 - Google Patents
A system and method for determining the genetic data for one or a small set of cells, or from fragmentary DNA, where a limited quantity of genetic data is available, are disclosed …
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Rabinowitz, M., Banjevic, M., Demko, Z., & Johnson, D. (2014). U.S. Patent Application No. 14/286,895.
Rabinowitz, Matthew, et al. "System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals." U.S. Patent Application No. 14/286,895.
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program design
Malausa T.
GSID: WHOkoWkX3N8J
T Malausa, A Gilles, E Meglécz… - Molecular Ecology …, 2011 - Wiley Online Library
Microsatellites (or SSRs: simple sequence repeats) are among the most frequently used DNA markers in many areas of research. The use of microsatellite markers is limited by the …
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Malausa, T., Gilles, A., Meglécz, E., Blanquart, H., Duthoy, S., Costedoat, C., ... & Martin, J. F. (2011). High‐throughput microsatellite isolation through 454 GS‐FLX Titanium pyrosequencing of enriched DNA libraries. Molecular Ecology Resources, 11(4), 638-644.
Malausa, Thibaut, et al. "High‐throughput microsatellite isolation through 454 GS‐FLX Titanium pyrosequencing of enriched DNA libraries." Molecular Ecology Resources 11.4 (2011): 638-644.
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diversity
[No authors listed]
GSID: BQHvTITdwYQJ
A Karp, OLE Seberg, M Buiatti - Annals of Botany, 1996 - Elsevier
… The term ‘botanical diversity’ conjures up many different images. To some it brings to mind complex natural ecosystems, such as rain … of diversity which may be investigated using a variety of different DNA technologies. Traditional approaches to...
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Karp, A., Seberg, O. L. E., & Buiatti, M. (1996). Molecular techniques in the assessment of botanical diversity. Annals of Botany, 78(2), 143-149.
Karp, Angela, O. L. E. Seberg, and Marcello Buiatti. "Molecular techniques in the assessment of botanical diversity." Annals of Botany 78.2 (1996): 143-149.
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diversity
Not F, del J.
GSID: MzbCSfRsNhQJ
F Not, J del Campo, V Balagué, C de Vargas… - PloS one, 2009 - journals.plos.org
… diversity based on 18S ribosomal DNA clone libraries have unveiled numerous sequences of novel high-rank taxa. This newfound diversity … High protistan diversity in the
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NOT, Fabrice, et al. New insights into the diversity of marine picoeukaryotes. PloS one, 2009, vol. 4, no 9, p. e7143.
Not, F., del Campo, J., Balagué, V., de Vargas, C., & Massana, R. (2009). New insights into the diversity of marine picoeukaryotes. PloS one, 4(9), e7143.
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diversity
Thompson LR, Sanders JG, McDonald D.
GSID: 9pWmwzvbdlQJ
LR Thompson, JG Sanders, D McDonald, A Amir… - Nature, 2017 - nature.com
Our growing awareness of the microbial world’s importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks impedes …
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Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., ... & Knight, R. (2017). A communal catalogue reveals Earth’s multiscale microbial diversity. Nature, 551(7681), 457-463.
Thompson, Luke R., et al. "A communal catalogue reveals Earth’s multiscale microbial diversity." Nature 551.7681 (2017): 457-463.
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