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Showing 25 to 36 of 2016 entries
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Editorial.

Nucleic acids research

[No authors listed]
PMID: 16617507
Nucleic Acids Res. 1994 Aug 11;22(15):2867.

No abstract available.

Cite
Editorial. Nucleic Acids Res. 1994;22(15):2867
(1994). Editorial. Nucleic acids research, 22(15), 2867.
"Editorial." Nucleic acids research vol. 22,15 (1994): 2867.
Editorial. Nucleic Acids Res. 1994 Aug 11;22(15):2867. PMID: 16617507; PMCID: PMC310246.
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Editorial.

Nucleic acids research

[No authors listed]
PMID: 16617509
Nucleic Acids Res. 1994 Aug 25;22(16):3269. doi: 10.1093/nar/22.16.3269.

No abstract available.

Cite
Editorial. Nucleic Acids Res. 1994;22(16):3269doi: 10.1093/nar/22.16.3269.
(1994). Editorial. Nucleic acids research, 22(16), 3269. https://doi.org/10.1093/nar/22.16.3269
"Editorial." Nucleic acids research vol. 22,16 (1994): 3269. doi: https://doi.org/10.1093/nar/22.16.3269
Editorial. Nucleic Acids Res. 1994 Aug 25;22(16):3269. doi: 10.1093/nar/22.16.3269. PMID: 16617509; PMCID: PMC523716.
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Editorial.

Nucleic acids research

[No authors listed]
PMID: 16617512
Nucleic Acids Res. 1994 Sep 25;22(19):3817.

No abstract available.

Cite
Editorial. Nucleic Acids Res. 1994;22(19):3817
(1994). Editorial. Nucleic acids research, 22(19), 3817.
"Editorial." Nucleic acids research vol. 22,19 (1994): 3817.
Editorial. Nucleic Acids Res. 1994 Sep 25;22(19):3817. PMID: 16617512; PMCID: PMC308374.
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Synthesis of Lectin-Like Protein in Developing Cotyledons of Normal and Phytohemagglutinin-Deficient Phaseolus vulgaris.

Plant physiology

Vitale A, Zoppè M, Fabbrini MS, Genga A, Rivas L, Bollini R.
PMID: 16666845
Plant Physiol. 1989 Jul;90(3):1015-21. doi: 10.1104/pp.90.3.1015.

The genome of the common bean Phaseolus vulgaris contains a small gene family that encodes lectin and lectin-like proteins (phytohemagglutinin, arcelin, and others). One of these phytohemagglutinin-like genes was cloned by L. M. Hoffman et al. ([1982] Nucleic Acids...

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Vitale A, Zoppè M, Fabbrini MS, et al. Synthesis of Lectin-Like Protein in Developing Cotyledons of Normal and Phytohemagglutinin-Deficient Phaseolus vulgaris. Plant Physiol. 1989;90(3):1015-21doi: 10.1104/pp.90.3.1015.
Vitale, A., Zoppè, M., Fabbrini, M. S., Genga, A., Rivas, L., & Bollini, R. (1989). Synthesis of Lectin-Like Protein in Developing Cotyledons of Normal and Phytohemagglutinin-Deficient Phaseolus vulgaris. Plant physiology, 90(3), 1015-21. https://doi.org/10.1104/pp.90.3.1015
Vitale, A, et al. "Synthesis of Lectin-Like Protein in Developing Cotyledons of Normal and Phytohemagglutinin-Deficient Phaseolus vulgaris." Plant physiology vol. 90,3 (1989): 1015-21. doi: https://doi.org/10.1104/pp.90.3.1015
Vitale A, Zoppè M, Fabbrini MS, Genga A, Rivas L, Bollini R. Synthesis of Lectin-Like Protein in Developing Cotyledons of Normal and Phytohemagglutinin-Deficient Phaseolus vulgaris. Plant Physiol. 1989 Jul;90(3):1015-21. doi: 10.1104/pp.90.3.1015. PMID: 16666845; PMCID: PMC1061837.
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Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.

Nucleic acids research

Jayapandian M, Chapman A, Tarcea VG, Yu C, Elkiss A, Ianni A, Liu B, Nandi A, Santos C, Andrews P, Athey B, States D, Jagadish HV.
PMID: 17130145
Nucleic Acids Res. 2007 Jan;35:D566-71. doi: 10.1093/nar/gkl859. Epub 2006 Nov 27.

Protein interaction data exists in a number of repositories. Each repository has its own data format, molecule identifier and supplementary information. Michigan Molecular Interactions (MiMI) assists scientists searching through this overwhelming amount of protein interaction data. MiMI gathers data...

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Jayapandian M, Chapman A, Tarcea VG, et al. Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res. 2006;35:D566-71doi: 10.1093/nar/gkl859.
Jayapandian, M., Chapman, A., Tarcea, V. G., Yu, C., Elkiss, A., Ianni, A., Liu, B., Nandi, A., Santos, C., Andrews, P., Athey, B., States, D., & Jagadish, H. V. (2007). Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic acids research, 35D566-71. https://doi.org/10.1093/nar/gkl859
Jayapandian, Magesh, et al. "Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together." Nucleic acids research vol. 35 (2007): D566-71. doi: https://doi.org/10.1093/nar/gkl859
Jayapandian M, Chapman A, Tarcea VG, Yu C, Elkiss A, Ianni A, Liu B, Nandi A, Santos C, Andrews P, Athey B, States D, Jagadish HV. Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res. 2007 Jan;35:D566-71. doi: 10.1093/nar/gkl859. Epub 2006 Nov 27. PMID: 17130145; PMCID: PMC1716720.
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Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Nucleic acids research

Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tárraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, García F, Marbà M, Montaner D, Dopazo J.
PMID: 20478823
Nucleic Acids Res. 2010 Jul;38:W210-3. doi: 10.1093/nar/gkq388. Epub 2010 May 16.

Babelomics is a response to the growing necessity of integrating and analyzing different types of genomic data in an environment that allows an easy functional interpretation of the results. Babelomics includes a complete suite of methods for the analysis...

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Medina I, Carbonell J, Pulido L, et al. Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 2010;38:W210-3doi: 10.1093/nar/gkq388.
Medina, I., Carbonell, J., Pulido, L., Madeira, S. C., Goetz, S., Conesa, A., Tárraga, J., Pascual-Montano, A., Nogales-Cadenas, R., Santoyo, J., García, F., Marbà, M., Montaner, D., & Dopazo, J. (2010). Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic acids research, 38W210-3. https://doi.org/10.1093/nar/gkq388
Medina, Ignacio, et al. "Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling." Nucleic acids research vol. 38 (2010): W210-3. doi: https://doi.org/10.1093/nar/gkq388
Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tárraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, García F, Marbà M, Montaner D, Dopazo J. Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 2010 Jul;38:W210-3. doi: 10.1093/nar/gkq388. Epub 2010 May 16. PMID: 20478823; PMCID: PMC2896184.
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Escherichia coli HU protein has a role in the repair of abasic sites in DNA.

Nucleic acids research

Kow YW, Imhoff B, Weiss B, Hung DC, Hindoyan AA, Story RM, Goodman SD.
PMID: 19454600
Nucleic Acids Res. 2009 Jun;37(10):3474. doi: 10.1093/nar/gkp454. Epub 2009 May 19.

No abstract available.

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Kow YW, Imhoff B, Weiss B, et al. Escherichia coli HU protein has a role in the repair of abasic sites in DNA. Nucleic Acids Res. 2009;37(10):3474doi: 10.1093/nar/gkp454.
Kow, Y. W., Imhoff, B., Weiss, B., Hung, D. C., Hindoyan, A. A., Story, R. M., & Goodman, S. D. (2009). Escherichia coli HU protein has a role in the repair of abasic sites in DNA. Nucleic acids research, 37(10), 3474. https://doi.org/10.1093/nar/gkp454
Kow, Yoke W, et al. "Escherichia coli HU protein has a role in the repair of abasic sites in DNA." Nucleic acids research vol. 37,10 (2009): 3474. doi: https://doi.org/10.1093/nar/gkp454
Kow YW, Imhoff B, Weiss B, Hung DC, Hindoyan AA, Story RM, Goodman SD. Escherichia coli HU protein has a role in the repair of abasic sites in DNA. Nucleic Acids Res. 2009 Jun;37(10):3474. doi: 10.1093/nar/gkp454. Epub 2009 May 19. PMID: 19454600; PMCID: PMC2691850.
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DOMINE: a comprehensive collection of known and predicted domain-domain interactions.

Nucleic acids research

Yellaboina S, Tasneem A, Zaykin DV, Raghavachari B, Jothi R.
PMID: 21113022
Nucleic Acids Res. 2011 Jan;39:D730-5. doi: 10.1093/nar/gkq1229. Epub 2010 Nov 27.

DOMINE is a comprehensive collection of known and predicted domain-domain interactions (DDIs) compiled from 15 different sources. The updated DOMINE includes 2285 new domain-domain interactions (DDIs) inferred from experimentally characterized high-resolution three-dimensional structures, and about 3500 novel predictions by...

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Yellaboina S, Tasneem A, Zaykin DV, et al. DOMINE: a comprehensive collection of known and predicted domain-domain interactions. Nucleic Acids Res. 2010;39:D730-5doi: 10.1093/nar/gkq1229.
Yellaboina, S., Tasneem, A., Zaykin, D. V., Raghavachari, B., & Jothi, R. (2011). DOMINE: a comprehensive collection of known and predicted domain-domain interactions. Nucleic acids research, 39D730-5. https://doi.org/10.1093/nar/gkq1229
Yellaboina, Sailu, et al. "DOMINE: a comprehensive collection of known and predicted domain-domain interactions." Nucleic acids research vol. 39 (2011): D730-5. doi: https://doi.org/10.1093/nar/gkq1229
Yellaboina S, Tasneem A, Zaykin DV, Raghavachari B, Jothi R. DOMINE: a comprehensive collection of known and predicted domain-domain interactions. Nucleic Acids Res. 2011 Jan;39:D730-5. doi: 10.1093/nar/gkq1229. Epub 2010 Nov 27. PMID: 21113022; PMCID: PMC3013741.
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BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks.

Nucleic acids research

Qiao LA, Zhu J, Liu Q, Zhu T, Song C, Lin W, Wei G, Mu L, Tao J, Zhao N, Yang G, Liu X.
PMID: 15302917
Nucleic Acids Res. 2004 Aug 09;32(14):4175-81. doi: 10.1093/nar/gkh756. Print 2004.

The integration of bioinformatics resources worldwide is one of the major concerns of the biological community. We herein established the BOD (Bioinformatics on demand) system to use Grid computing technology to set up a virtual workbench via a web-based...

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Qiao LA, Zhu J, Liu Q, et al. BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks. Nucleic Acids Res. 2004;32(14):4175-81doi: 10.1093/nar/gkh756.
Qiao, L. A., Zhu, J., Liu, Q., Zhu, T., Song, C., Lin, W., Wei, G., Mu, L., Tao, J., Zhao, N., Yang, G., & Liu, X. (2004). BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks. Nucleic acids research, 32(14), 4175-81. https://doi.org/10.1093/nar/gkh756
Qiao, Li-An, et al. "BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks." Nucleic acids research vol. 32,14 (2004): 4175-81. doi: https://doi.org/10.1093/nar/gkh756
Qiao LA, Zhu J, Liu Q, Zhu T, Song C, Lin W, Wei G, Mu L, Tao J, Zhao N, Yang G, Liu X. BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks. Nucleic Acids Res. 2004 Aug 09;32(14):4175-81. doi: 10.1093/nar/gkh756. Print 2004. PMID: 15302917; PMCID: PMC514377.
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Towards BioDBcore: a community-defined information specification for biological databases.

Nucleic acids research

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C.
PMID: 21097465
Nucleic Acids Res. 2011 Jan;39:D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18.

The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and...

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Gaudet P, Bairoch A, Field D, et al. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 2010;39:D7-10doi: 10.1093/nar/gkq1173.
Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G., Imanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Mizrachi, I. K., Orchard, S., Ouellette, B. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O., Yamasaki, C. (2011). Towards BioDBcore: a community-defined information specification for biological databases. Nucleic acids research, 39D7-10. https://doi.org/10.1093/nar/gkq1173
Gaudet, Pascale, et al. "Towards BioDBcore: a community-defined information specification for biological databases." Nucleic acids research vol. 39 (2011): D7-10. doi: https://doi.org/10.1093/nar/gkq1173
Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C. Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 2011 Jan;39:D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18. PMID: 21097465; PMCID: PMC3013734.
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OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.

Nucleic acids research

Matsushima A, Kobayashi N, Mochizuki Y, Ishii M, Kawaguchi S, Endo TA, Umetsu R, Makita Y, Toyoda T.
PMID: 19528066
Nucleic Acids Res. 2009 Jul;37:W57-62. doi: 10.1093/nar/gkp404. Epub 2009 Jun 15.

OmicBrowse is a genome browser designed as a scalable system for maintaining numerous genome annotation datasets. It is an open source tool capable of regulating multiple user data access to each dataset to allow multiple users to have their...

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Matsushima A, Kobayashi N, Mochizuki Y, et al. OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. 2009;37:W57-62doi: 10.1093/nar/gkp404.
Matsushima, A., Kobayashi, N., Mochizuki, Y., Ishii, M., Kawaguchi, S., Endo, T. A., Umetsu, R., Makita, Y., & Toyoda, T. (2009). OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic acids research, 37W57-62. https://doi.org/10.1093/nar/gkp404
Matsushima, Akihiro, et al. "OmicBrowse: a Flash-based high-performance graphics interface for genomic resources." Nucleic acids research vol. 37 (2009): W57-62. doi: https://doi.org/10.1093/nar/gkp404
Matsushima A, Kobayashi N, Mochizuki Y, Ishii M, Kawaguchi S, Endo TA, Umetsu R, Makita Y, Toyoda T. OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. 2009 Jul;37:W57-62. doi: 10.1093/nar/gkp404. Epub 2009 Jun 15. PMID: 19528066; PMCID: PMC2703975.
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VISIBIOweb: visualization and layout services for BioPAX pathway models.

Nucleic acids research

Dilek A, Belviranli ME, Dogrusoz U.
PMID: 20460470
Nucleic Acids Res. 2010 Jul;38:W150-4. doi: 10.1093/nar/gkq352. Epub 2010 May 11.

With recent advancements in techniques for cellular data acquisition, information on cellular processes has been increasing at a dramatic rate. Visualization is critical to analyzing and interpreting complex information; representing cellular processes or pathways is no exception. VISIBIOweb is...

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Dilek A, Belviranli ME, Dogrusoz U. VISIBIOweb: visualization and layout services for BioPAX pathway models. Nucleic Acids Res. 2010;38:W150-4doi: 10.1093/nar/gkq352.
Dilek, A., Belviranli, M. E., & Dogrusoz, U. (2010). VISIBIOweb: visualization and layout services for BioPAX pathway models. Nucleic acids research, 38W150-4. https://doi.org/10.1093/nar/gkq352
Dilek, Alptug, et al. "VISIBIOweb: visualization and layout services for BioPAX pathway models." Nucleic acids research vol. 38 (2010): W150-4. doi: https://doi.org/10.1093/nar/gkq352
Dilek A, Belviranli ME, Dogrusoz U. VISIBIOweb: visualization and layout services for BioPAX pathway models. Nucleic Acids Res. 2010 Jul;38:W150-4. doi: 10.1093/nar/gkq352. Epub 2010 May 11. PMID: 20460470; PMCID: PMC2896092.
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Showing 25 to 36 of 2016 entries