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Offline Micro-IMAC Enrichment of Phosphoproteins.

CSH protocols

Corthals GL, Wasinger VC, Goodlett DR.
PMID: 21356966
CSH Protoc. 2007 Nov 01;2007:pdb.prot4624. doi: 10.1101/pdb.prot4624.

INTRODUCTIONImmobilized metal affinity chromatography (IMAC) can be performed offline or online with μLC-ESI-MS/MS. The online configuration has been used successfully despite suboptimal low-level analysis due to the relative disparity between IMAC and μLC flow rates. With IMAC performed offline...

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Corthals GL, Wasinger VC, Goodlett DR. Offline Micro-IMAC Enrichment of Phosphoproteins. CSH Protoc. 2007;2007:pdb.prot4624doi: 10.1101/pdb.prot4624.
Corthals, G. L., Wasinger, V. C., & Goodlett, D. R. (2007). Offline Micro-IMAC Enrichment of Phosphoproteins. CSH protocols, 2007pdb.prot4624. https://doi.org/10.1101/pdb.prot4624
Corthals, Garry L, et al. "Offline Micro-IMAC Enrichment of Phosphoproteins." CSH protocols vol. 2007 (2007): pdb.prot4624. doi: https://doi.org/10.1101/pdb.prot4624
Corthals GL, Wasinger VC, Goodlett DR. Offline Micro-IMAC Enrichment of Phosphoproteins. CSH Protoc. 2007 Nov 01;2007:pdb.prot4624. doi: 10.1101/pdb.prot4624. PMID: 21356966.
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Heat and phosphate starvation effects on the proteome, morphology and chemical composition of the biomining bacteria Acidithiobacillus ferrooxidans.

World journal of microbiology & biotechnology

Ribeiro DA, Maretto DA, Nogueira FC, Silva MJ, Campos FA, Domont GB, Poppi RJ, Ottoboni LM.
PMID: 25187146
World J Microbiol Biotechnol. 2011 Jun;27(6):1469-79. doi: 10.1007/s11274-010-0599-9. Epub 2010 Nov 04.

Acidithiobacillus ferrooxidans is a Gram negative, acidophilic, chemolithoautotrophic bacterium that plays an important role in metal bioleaching. During bioleaching, the cells are subjected to changes in the growth temperature and nutrients starvation. The aim of this study was to...

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Ribeiro DA, Maretto DA, Nogueira FC, et al. Heat and phosphate starvation effects on the proteome, morphology and chemical composition of the biomining bacteria Acidithiobacillus ferrooxidans. World J Microbiol Biotechnol. 2010;27(6):1469-79doi: 10.1007/s11274-010-0599-9.
Ribeiro, D. A., Maretto, D. A., Nogueira, F. C., Silva, M. J., Campos, F. A., Domont, G. B., Poppi, R. J., & Ottoboni, L. M. (2011). Heat and phosphate starvation effects on the proteome, morphology and chemical composition of the biomining bacteria Acidithiobacillus ferrooxidans. World journal of microbiology & biotechnology, 27(6), 1469-79. https://doi.org/10.1007/s11274-010-0599-9
Ribeiro, Daniela A, et al. "Heat and phosphate starvation effects on the proteome, morphology and chemical composition of the biomining bacteria Acidithiobacillus ferrooxidans." World journal of microbiology & biotechnology vol. 27,6 (2011): 1469-79. doi: https://doi.org/10.1007/s11274-010-0599-9
Ribeiro DA, Maretto DA, Nogueira FC, Silva MJ, Campos FA, Domont GB, Poppi RJ, Ottoboni LM. Heat and phosphate starvation effects on the proteome, morphology and chemical composition of the biomining bacteria Acidithiobacillus ferrooxidans. World J Microbiol Biotechnol. 2011 Jun;27(6):1469-79. doi: 10.1007/s11274-010-0599-9. Epub 2010 Nov 04. PMID: 25187146.
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Sweet and Sour .

Frontiers in microbiology

Marcelino I, Colomé-Calls N, Holzmuller P, Lisacek F, Reynaud Y, Canals F, Vachiéry N.
PMID: 30930869
Front Microbiol. 2019 Mar 15;10:450. doi: 10.3389/fmicb.2019.00450. eCollection 2019.

Unraveling which proteins and post-translational modifications (PTMs) affect bacterial pathogenesis and physiology in diverse environments is a tough challenge. Herein, we used mass spectrometry-based assays to study protein phosphorylation and glycosylation in

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Marcelino I, Colomé-Calls N, Holzmuller P, et al. Sweet and Sour . Front Microbiol. 2019;10:450doi: 10.3389/fmicb.2019.00450.
Marcelino, I., Colomé-Calls, N., Holzmuller, P., Lisacek, F., Reynaud, Y., Canals, F., & Vachiéry, N. (2019). Sweet and Sour . Frontiers in microbiology, 10450. https://doi.org/10.3389/fmicb.2019.00450
Marcelino, Isabel, et al. "Sweet and Sour ." Frontiers in microbiology vol. 10 (2019): 450. doi: https://doi.org/10.3389/fmicb.2019.00450
Marcelino I, Colomé-Calls N, Holzmuller P, Lisacek F, Reynaud Y, Canals F, Vachiéry N. Sweet and Sour . Front Microbiol. 2019 Mar 15;10:450. doi: 10.3389/fmicb.2019.00450. eCollection 2019. PMID: 30930869; PMCID: PMC6429767.
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Impaired GABA.

Oncotarget

Valente P, Farisello P, Valtorta F, Baldelli P, Benfenati F.
PMID: 29163811
Oncotarget. 2017 Sep 30;8(52):90061-90076. doi: 10.18632/oncotarget.21405. eCollection 2017 Oct 27.

Synapsins are a family of synaptic vesicle phosphoproteins regulating synaptic transmission and plasticity.

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Valente P, Farisello P, Valtorta F, et al. Impaired GABA. Oncotarget. 2017;8(52):90061-90076doi: 10.18632/oncotarget.21405.
Valente, P., Farisello, P., Valtorta, F., Baldelli, P., & Benfenati, F. (2017). Impaired GABA. Oncotarget, 8(52), 90061-90076. https://doi.org/10.18632/oncotarget.21405
Valente, Pierluigi, et al. "Impaired GABA." Oncotarget vol. 8,52 (2017): 90061-90076. doi: https://doi.org/10.18632/oncotarget.21405
Valente P, Farisello P, Valtorta F, Baldelli P, Benfenati F. Impaired GABA. Oncotarget. 2017 Sep 30;8(52):90061-90076. doi: 10.18632/oncotarget.21405. eCollection 2017 Oct 27. PMID: 29163811; PMCID: PMC5685732.
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Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism .

Biotechnology for biofuels

Roustan V, Bakhtiari S, Roustan PJ, Weckwerth W.
PMID: 29209414
Biotechnol Biofuels. 2017 Nov 28;10:280. doi: 10.1186/s13068-017-0949-z. eCollection 2017.

BACKGROUND: Nitrogen deprivation and replenishment induces massive changes at the physiological and molecular level in the green alga RESULTS: To decipher the signaling pathways involved in this dynamic process, we applied a label-free in vivo shotgun phosphoproteomics analysis on...

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Roustan V, Bakhtiari S, Roustan PJ, et al. Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism . Biotechnol Biofuels. 2017;10:280doi: 10.1186/s13068-017-0949-z.
Roustan, V., Bakhtiari, S., Roustan, P. J., & Weckwerth, W. (2017). Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism . Biotechnology for biofuels, 10280. https://doi.org/10.1186/s13068-017-0949-z
Roustan, Valentin, et al. "Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism ." Biotechnology for biofuels vol. 10 (2017): 280. doi: https://doi.org/10.1186/s13068-017-0949-z
Roustan V, Bakhtiari S, Roustan PJ, Weckwerth W. Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism . Biotechnol Biofuels. 2017 Nov 28;10:280. doi: 10.1186/s13068-017-0949-z. eCollection 2017. PMID: 29209414; PMCID: PMC5704542.
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Smart polymers driven by multiple and tunable hydrogen bonds for intact phosphoprotein enrichment.

Science and technology of advanced materials

Zhang X, Lu Q, Chen C, Li X, Qing G, Sun T, Liang X.
PMID: 31497179
Sci Technol Adv Mater. 2019 Jul 15;20(1):858-869. doi: 10.1080/14686996.2019.1643259. eCollection 2019.

Separation of phosphoproteins is essential for understanding their vital roles in biological processes and pathology. Transition metal-based receptors and antibodies, the routinely used materials for phosphoproteins enrichment, both suffer from low sensitivity, low recovery and coverage. In this work,...

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Zhang X, Lu Q, Chen C, et al. Smart polymers driven by multiple and tunable hydrogen bonds for intact phosphoprotein enrichment. Sci Technol Adv Mater. 2019;20(1):858-869doi: 10.1080/14686996.2019.1643259.
Zhang, X., Lu, Q., Chen, C., Li, X., Qing, G., Sun, T., & Liang, X. (2019). Smart polymers driven by multiple and tunable hydrogen bonds for intact phosphoprotein enrichment. Science and technology of advanced materials, 20(1), 858-869. https://doi.org/10.1080/14686996.2019.1643259
Zhang, Xiaofei, et al. "Smart polymers driven by multiple and tunable hydrogen bonds for intact phosphoprotein enrichment." Science and technology of advanced materials vol. 20,1 (2019): 858-869. doi: https://doi.org/10.1080/14686996.2019.1643259
Zhang X, Lu Q, Chen C, Li X, Qing G, Sun T, Liang X. Smart polymers driven by multiple and tunable hydrogen bonds for intact phosphoprotein enrichment. Sci Technol Adv Mater. 2019 Jul 15;20(1):858-869. doi: 10.1080/14686996.2019.1643259. eCollection 2019. PMID: 31497179; PMCID: PMC6720224.
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Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells.

Oncology letters

Zou M, Wang J, Gao J, Han H, Fang Y.
PMID: 29435015
Oncol Lett. 2018 Mar;15(3):2889-2898. doi: 10.3892/ol.2017.7654. Epub 2017 Dec 19.

The incidence of breast cancer has been increasing in China and the age of breast cancer onset is earlier compared with Western countries. Compounds commonly used in Traditional Chinese Medicine (TCM) are an important source of anticancer drugs. Ginseng...

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Zou M, Wang J, Gao J, et al. Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells. Oncol Lett. 2017;15(3):2889-2898doi: 10.3892/ol.2017.7654.
Zou, M., Wang, J., Gao, J., Han, H., & Fang, Y. (2018). Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells. Oncology letters, 15(3), 2889-2898. https://doi.org/10.3892/ol.2017.7654
Zou, Mingjin, et al. "Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells." Oncology letters vol. 15,3 (2018): 2889-2898. doi: https://doi.org/10.3892/ol.2017.7654
Zou M, Wang J, Gao J, Han H, Fang Y. Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells. Oncol Lett. 2018 Mar;15(3):2889-2898. doi: 10.3892/ol.2017.7654. Epub 2017 Dec 19. PMID: 29435015; PMCID: PMC5778838.
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4E-BP1.

Cancer management and research

Lin X, Huang Y, Sun Y, Tan X, Ouyang J, Zhao B, Wang Y, Xing X, Liu J.
PMID: 32021427
Cancer Manag Res. 2020 Jan 07;12:103-115. doi: 10.2147/CMAR.S230849. eCollection 2020.

PURPOSE: Early formation of portal vein tumor thrombosis (PVTT) is a key characteristic of hepatocellular carcinoma (HCC) metastasis, but to date, the aetiology of PVTT in HCC metastasis is largely unknown. We aim to find highly sensitive and specific...

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Lin X, Huang Y, Sun Y, et al. 4E-BP1. Cancer Manag Res. 2020;12:103-115doi: 10.2147/CMAR.S230849.
Lin, X., Huang, Y., Sun, Y., Tan, X., Ouyang, J., Zhao, B., Wang, Y., Xing, X., & Liu, J. (2020). 4E-BP1. Cancer management and research, 12103-115. https://doi.org/10.2147/CMAR.S230849
Lin, Xincong, et al. "4E-BP1." Cancer management and research vol. 12 (2020): 103-115. doi: https://doi.org/10.2147/CMAR.S230849
Lin X, Huang Y, Sun Y, Tan X, Ouyang J, Zhao B, Wang Y, Xing X, Liu J. 4E-BP1. Cancer Manag Res. 2020 Jan 07;12:103-115. doi: 10.2147/CMAR.S230849. eCollection 2020. PMID: 32021427; PMCID: PMC6954833.
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Phosphoproteomic analysis of duck egg white and insight into the biological functions of identified phosphoproteins.

Journal of food biochemistry

Arshad R, Meng Y, Qiu N, Sun H, Keast R, Rehman A.
PMID: 32729115
J Food Biochem. 2020 Jul 29;e13367. doi: 10.1111/jfbc.13367. Epub 2020 Jul 29.

Phosphorylation of proteins is one of the most important and pleiotropic modifications. It plays a vital role in controlling protein functions. However, the phosphoproteome of duck egg white (DEW) has not been studied yet. To investigate the role of...

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Arshad R, Meng Y, Qiu N, et al. Phosphoproteomic analysis of duck egg white and insight into the biological functions of identified phosphoproteins. J Food Biochem. 2020;e13367doi: 10.1111/jfbc.13367.
Arshad, R., Meng, Y., Qiu, N., Sun, H., Keast, R., & Rehman, A. (2020). Phosphoproteomic analysis of duck egg white and insight into the biological functions of identified phosphoproteins. Journal of food biochemistry, e13367. https://doi.org/10.1111/jfbc.13367
Arshad, Rida, et al. "Phosphoproteomic analysis of duck egg white and insight into the biological functions of identified phosphoproteins." Journal of food biochemistry vol. (2020): e13367. doi: https://doi.org/10.1111/jfbc.13367
Arshad R, Meng Y, Qiu N, Sun H, Keast R, Rehman A. Phosphoproteomic analysis of duck egg white and insight into the biological functions of identified phosphoproteins. J Food Biochem. 2020 Jul 29;e13367. doi: 10.1111/jfbc.13367. Epub 2020 Jul 29. PMID: 32729115.
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Fabrication of polymeric microgels using reflux-precipitation polymerization and its application for phosphoprotein enrichment.

Journal of materials chemistry. B

Wang F, Zhang Y, Yang P, Jin S, Yu M, Guo J, Wang C.
PMID: 32261424
J Mater Chem B. 2014 May 07;2(17):2575-2582. doi: 10.1039/c3tb21359e. Epub 2014 Jan 29.

Functional polymeric microgels have great potential for biomedical applications owing to the outstanding advantages of their well-defined structures and tunable surface properties. However, traditional polymerization methods lack the efficient techniques needed for the fabrication of polymeric microgels. Herein, we...

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Wang F, Zhang Y, Yang P, et al. Fabrication of polymeric microgels using reflux-precipitation polymerization and its application for phosphoprotein enrichment. J Mater Chem B. 2014;2(17):2575-2582doi: 10.1039/c3tb21359e.
Wang, F., Zhang, Y., Yang, P., Jin, S., Yu, M., Guo, J., & Wang, C. (2014). Fabrication of polymeric microgels using reflux-precipitation polymerization and its application for phosphoprotein enrichment. Journal of materials chemistry. B, 2(17), 2575-2582. https://doi.org/10.1039/c3tb21359e
Wang, Fang, et al. "Fabrication of polymeric microgels using reflux-precipitation polymerization and its application for phosphoprotein enrichment." Journal of materials chemistry. B vol. 2,17 (2014): 2575-2582. doi: https://doi.org/10.1039/c3tb21359e
Wang F, Zhang Y, Yang P, Jin S, Yu M, Guo J, Wang C. Fabrication of polymeric microgels using reflux-precipitation polymerization and its application for phosphoprotein enrichment. J Mater Chem B. 2014 May 07;2(17):2575-2582. doi: 10.1039/c3tb21359e. Epub 2014 Jan 29. PMID: 32261424.
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Identification of phosphorylation proteins in response to water deficit during wheat flag leaf and grain development.

Botanical studies

Luo F, Deng X, Liu Y, Yan Y.
PMID: 30535879
Bot Stud. 2018 Dec 08;59(1):28. doi: 10.1186/s40529-018-0245-7.

BACKGROUND: Wheat (Triticum aestivum L.) serves as important grain crop widely cultivated in the world, which is often suffered by drought stress in natural conditions. As one of the most important post translation modifications, protein phosphorylation widely participates in...

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Luo F, Deng X, Liu Y, et al. Identification of phosphorylation proteins in response to water deficit during wheat flag leaf and grain development. Bot Stud. 2018;59(1):28doi: 10.1186/s40529-018-0245-7.
Luo, F., Deng, X., Liu, Y., & Yan, Y. (2018). Identification of phosphorylation proteins in response to water deficit during wheat flag leaf and grain development. Botanical studies, 59(1), 28. https://doi.org/10.1186/s40529-018-0245-7
Luo, Fei, et al. "Identification of phosphorylation proteins in response to water deficit during wheat flag leaf and grain development." Botanical studies vol. 59,1 (2018): 28. doi: https://doi.org/10.1186/s40529-018-0245-7
Luo F, Deng X, Liu Y, Yan Y. Identification of phosphorylation proteins in response to water deficit during wheat flag leaf and grain development. Bot Stud. 2018 Dec 08;59(1):28. doi: 10.1186/s40529-018-0245-7. PMID: 30535879; PMCID: PMC6286713.
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Emerging trends in developing biosensor techniques to undertake plant phosphoproteomic analysis.

Journal of proteomics

Farooq A, Bhat KA, Mir RA, Mahajan R, Nazir M, Sharma V, Zargar SM.
PMID: 34923172
J Proteomics. 2021 Dec 16;253:104458. doi: 10.1016/j.jprot.2021.104458. Epub 2021 Dec 16.

Protein modifications particularly phosphorylation is governed by a complex array of mechanisms to attain a functional conformation and regulate important biological processes in organisms during external environmental stimuli and hormone signaling. Phosphoproteomics is a promising field of proteomics for...

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Farooq A, Bhat KA, Mir RA, et al. Emerging trends in developing biosensor techniques to undertake plant phosphoproteomic analysis. J Proteomics. 2021;253:104458doi: 10.1016/j.jprot.2021.104458.
Farooq, A., Bhat, K. A., Mir, R. A., Mahajan, R., Nazir, M., Sharma, V., & Zargar, S. M. (2021). Emerging trends in developing biosensor techniques to undertake plant phosphoproteomic analysis. Journal of proteomics, 253104458. https://doi.org/10.1016/j.jprot.2021.104458
Farooq, Asmat, et al. "Emerging trends in developing biosensor techniques to undertake plant phosphoproteomic analysis." Journal of proteomics vol. 253 (2021): 104458. doi: https://doi.org/10.1016/j.jprot.2021.104458
Farooq A, Bhat KA, Mir RA, Mahajan R, Nazir M, Sharma V, Zargar SM. Emerging trends in developing biosensor techniques to undertake plant phosphoproteomic analysis. J Proteomics. 2021 Dec 16;253:104458. doi: 10.1016/j.jprot.2021.104458. Epub 2021 Dec 16. PMID: 34923172.
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Showing 25 to 36 of 293 entries