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Prevalence of Depression and Sleep Disorders in Patients on Dialysis: A Cross-Sectional Study in Qatar.

International journal of nephrology

Al-Ali F, Elshirbeny M, Hamad A, Kaddourah A, Ghonimi T, Ibrahim R, Fouda T.
PMID: 34136284
Int J Nephrol. 2021 May 26;2021:5533416. doi: 10.1155/2021/5533416. eCollection 2021.

Patients with end-stage renal disease treated with dialysis have poor quality of life (QOL). Improving QOL in these patients with multiple comorbidities is a large challenge. We performed a cross-sectional study to evaluate the prevalence and associated factors of...

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Al-Ali F, Elshirbeny M, Hamad A, et al. Prevalence of Depression and Sleep Disorders in Patients on Dialysis: A Cross-Sectional Study in Qatar. Int J Nephrol. 2021;2021:5533416doi: 10.1155/2021/5533416.
Al-Ali, F., Elshirbeny, M., Hamad, A., Kaddourah, A., Ghonimi, T., Ibrahim, R., & Fouda, T. (2021). Prevalence of Depression and Sleep Disorders in Patients on Dialysis: A Cross-Sectional Study in Qatar. International journal of nephrology, 20215533416. https://doi.org/10.1155/2021/5533416
Al-Ali, Fadwa, et al. "Prevalence of Depression and Sleep Disorders in Patients on Dialysis: A Cross-Sectional Study in Qatar." International journal of nephrology vol. 2021 (2021): 5533416. doi: https://doi.org/10.1155/2021/5533416
Al-Ali F, Elshirbeny M, Hamad A, Kaddourah A, Ghonimi T, Ibrahim R, Fouda T. Prevalence of Depression and Sleep Disorders in Patients on Dialysis: A Cross-Sectional Study in Qatar. Int J Nephrol. 2021 May 26;2021:5533416. doi: 10.1155/2021/5533416. eCollection 2021. PMID: 34136284; PMCID: PMC8175178.
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WhiskEras: A New Algorithm for Accurate Whisker Tracking.

Frontiers in cellular neuroscience

Betting JLF, Romano V, Al-Ars Z, Bosman LWJ, Strydis C, De Zeeuw CI.
PMID: 33281560
Front Cell Neurosci. 2020 Nov 17;14:588445. doi: 10.3389/fncel.2020.588445. eCollection 2020.

Rodents engage in active touch using their facial whiskers: they explore their environment by making rapid back-and-forth movements. The fast nature of whisker movements, during which whiskers often cross each other, makes it notoriously difficult to track individual whiskers...

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Betting JLF, Romano V, Al-Ars Z, et al. WhiskEras: A New Algorithm for Accurate Whisker Tracking. Front Cell Neurosci. 2020;14:588445doi: 10.3389/fncel.2020.588445.
Betting, J. L. F., Romano, V., Al-Ars, Z., Bosman, L. W. J., Strydis, C., & De Zeeuw, C. I. (2020). WhiskEras: A New Algorithm for Accurate Whisker Tracking. Frontiers in cellular neuroscience, 14588445. https://doi.org/10.3389/fncel.2020.588445
Betting, Jan-Harm L F, et al. "WhiskEras: A New Algorithm for Accurate Whisker Tracking." Frontiers in cellular neuroscience vol. 14 (2020): 588445. doi: https://doi.org/10.3389/fncel.2020.588445
Betting JLF, Romano V, Al-Ars Z, Bosman LWJ, Strydis C, De Zeeuw CI. WhiskEras: A New Algorithm for Accurate Whisker Tracking. Front Cell Neurosci. 2020 Nov 17;14:588445. doi: 10.3389/fncel.2020.588445. eCollection 2020. PMID: 33281560; PMCID: PMC7705537.
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Renal Manifestations of Covid-19: Physiology and Pathophysiology.

Journal of clinical medicine

Armaly Z, Kinaneh S, Skorecki K.
PMID: 33804075
J Clin Med. 2021 Mar 15;10(6). doi: 10.3390/jcm10061216.

Corona virus disease 2019 (COVID-19) imposes a serious public health pandemic affecting the whole world, as it is spreading exponentially. Besides its high infectivity, SARS-CoV-2 causes multiple serious derangements, where the most prominent is severe acute respiratory syndrome as...

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Armaly Z, Kinaneh S, Skorecki K. Renal Manifestations of Covid-19: Physiology and Pathophysiology. J Clin Med. 2021;10(6)doi: 10.3390/jcm10061216.
Armaly, Z., Kinaneh, S., & Skorecki, K. (2021). Renal Manifestations of Covid-19: Physiology and Pathophysiology. Journal of clinical medicine, 10(6), . https://doi.org/10.3390/jcm10061216
Armaly, Zaher, et al. "Renal Manifestations of Covid-19: Physiology and Pathophysiology." Journal of clinical medicine vol. 10,6 (2021). doi: https://doi.org/10.3390/jcm10061216
Armaly Z, Kinaneh S, Skorecki K. Renal Manifestations of Covid-19: Physiology and Pathophysiology. J Clin Med. 2021 Mar 15;10(6). doi: 10.3390/jcm10061216. PMID: 33804075; PMCID: PMC8000200.
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Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework.

BMC genomics

Ahmad T, Ahmed N, Al-Ars Z, Hofstee HP.
PMID: 33208101
BMC Genomics. 2020 Nov 18;21:683. doi: 10.1186/s12864-020-07013-y.

BACKGROUND: Immense improvements in sequencing technologies enable producing large amounts of high throughput and cost effective next-generation sequencing (NGS) data. This data needs to be processed efficiently for further downstream analyses. Computing systems need this large amounts of data...

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Ahmad T, Ahmed N, Al-Ars Z, et al. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework. BMC Genomics. 2020;21:683doi: 10.1186/s12864-020-07013-y.
Ahmad, T., Ahmed, N., Al-Ars, Z., & Hofstee, H. P. (2020). Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework. BMC genomics, 21683. https://doi.org/10.1186/s12864-020-07013-y
Ahmad, Tanveer, et al. "Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework." BMC genomics vol. 21 (2020): 683. doi: https://doi.org/10.1186/s12864-020-07013-y
Ahmad T, Ahmed N, Al-Ars Z, Hofstee HP. Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework. BMC Genomics. 2020 Nov 18;21:683. doi: 10.1186/s12864-020-07013-y. PMID: 33208101; PMCID: PMC7677819.
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Hodgkin's Lymphoma in the Context of Psoriasis Vulgaris Treated With Immunosuppressive Therapy: A Case Report and Review of Literature.

Cureus

Alali Z, Al Ashour BH, Alrefaee M.
PMID: 34912631
Cureus. 2021 Nov 11;13(11):e19490. doi: 10.7759/cureus.19490. eCollection 2021 Nov.

Psoriasis is a multisystemic chronic inflammatory immune-mediated disorder presenting with multiple clinical manifestations and comorbidities. Studies suggested a significant association between the incidence of malignancy including Hodgkin's lymphoma and cutaneous T-cell lymphoma and malignancy-related deaths in patients with psoriasis...

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Alali Z, Al Ashour BH, Alrefaee M. Hodgkin's Lymphoma in the Context of Psoriasis Vulgaris Treated With Immunosuppressive Therapy: A Case Report and Review of Literature. Cureus. 2021;13(11):e19490doi: 10.7759/cureus.19490.
Alali, Z., Al Ashour, B. H., & Alrefaee, M. (2021). Hodgkin's Lymphoma in the Context of Psoriasis Vulgaris Treated With Immunosuppressive Therapy: A Case Report and Review of Literature. Cureus, 13(11), e19490. https://doi.org/10.7759/cureus.19490
Alali, Zainab, et al. "Hodgkin's Lymphoma in the Context of Psoriasis Vulgaris Treated With Immunosuppressive Therapy: A Case Report and Review of Literature." Cureus vol. 13,11 (2021): e19490. doi: https://doi.org/10.7759/cureus.19490
Alali Z, Al Ashour BH, Alrefaee M. Hodgkin's Lymphoma in the Context of Psoriasis Vulgaris Treated With Immunosuppressive Therapy: A Case Report and Review of Literature. Cureus. 2021 Nov 11;13(11):e19490. doi: 10.7759/cureus.19490. eCollection 2021 Nov. PMID: 34912631; PMCID: PMC8664404.
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Turkish League Against Rheumatism Consensus Report: Recommendations For Management of Axial Spondyloarthritis.

Archives of rheumatology

Bodur H, Yurdakul FG, Ataman Ş, Garip Y, Nas K, Fikriye Figen Ayhan FFA, Akgül Ö, Akinci A, Altay Z, Birtane M, Soy Buğdayci D, Çapkin E, Çevik R, Duruöz T, Gürer G, Kaçar C, Kamanli A, Kaptanoğlu E, Kaya T, Kocabaş H, Kuru Ö, Melikoğlu MA, Özdemirel E, Özel S, Rezvani A, Sezer İ, Sunar İ, Yilmaz G.
PMID: 29900976
Arch Rheumatol. 2018 Feb 14;33(1):1-16. doi: 10.5606/ArchRheumatol.2018.6833. eCollection 2018 Mar.

OBJECTIVES: This study aims to update 2011 Turkish League Against Rheumatism SpondyloArthritis Recommendations, and to compose a national expert opinion on management of axial spondyloArthritis under guidance of current guidelines, and implantation and dissemination of these international guidelines into...

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Bodur H, Yurdakul FG, Ataman Ş, et al. Turkish League Against Rheumatism Consensus Report: Recommendations For Management of Axial Spondyloarthritis. Arch Rheumatol. 2018;33(1):1-16doi: 10.5606/ArchRheumatol.2018.6833.
Bodur, H., Yurdakul, F. G., Ataman, �. �., Garip, Y., Nas, K., Fikriye Figen Ayhan, F. F. A., Akgül, �. �., Akinci, A., Altay, Z., Birtane, M., Soy Buğdayci, D., Çapkin, E., Çevik, R., Duruöz, T., Gürer, G., Kaçar, C., Kamanli, A., Kaptanoğlu, E., Kaya, T., Kocabaş, H., Kuru, �. �., Melikoğlu, M. A., Özdemirel, E., Özel, S., Rezvani, A., Sezer, �. �., Sunar, �. �., & Yilmaz, G. (2018). Turkish League Against Rheumatism Consensus Report: Recommendations For Management of Axial Spondyloarthritis. Archives of rheumatology, 33(1), 1-16. https://doi.org/10.5606/ArchRheumatol.2018.6833
Bodur, Hatice, et al. "Turkish League Against Rheumatism Consensus Report: Recommendations For Management of Axial Spondyloarthritis." Archives of rheumatology vol. 33,1 (2018): 1-16. doi: https://doi.org/10.5606/ArchRheumatol.2018.6833
Bodur H, Yurdakul FG, Ataman Ş, Garip Y, Nas K, Fikriye Figen Ayhan FFA, Akgül Ö, Akinci A, Altay Z, Birtane M, Soy Buğdayci D, Çapkin E, Çevik R, Duruöz T, Gürer G, Kaçar C, Kamanli A, Kaptanoğlu E, Kaya T, Kocabaş H, Kuru Ö, Melikoğlu MA, Özdemirel E, Özel S, Rezvani A, Sezer İ, Sunar İ, Yilmaz G. Turkish League Against Rheumatism Consensus Report: Recommendations For Management of Axial Spondyloarthritis. Arch Rheumatol. 2018 Feb 14;33(1):1-16. doi: 10.5606/ArchRheumatol.2018.6833. eCollection 2018 Mar. PMID: 29900976; PMCID: PMC5864166.
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Fine particles matter components and interstitial lung disease in rheumatoid arthritis.

The European respiratory journal

Zhao N, Al-Aly Z, Zheng B, van Donkelaar A, Martin RV, Pineau CA, Bernatsky S, Backhaus B.
PMID: 34949700
Eur Respir J. 2021 Dec 23; doi: 10.1183/13993003.02149-2021. Epub 2021 Dec 23.

Exposure to ambient fine particulate matter (PM

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Zhao N, Al-Aly Z, Zheng B, et al. Fine particles matter components and interstitial lung disease in rheumatoid arthritis. Eur Respir J. 2021;doi: 10.1183/13993003.02149-2021.
Zhao, N., Al-Aly, Z., Zheng, B., van Donkelaar, A., Martin, R. V., Pineau, C. A., Bernatsky, S., & Backhaus, B. (2021). Fine particles matter components and interstitial lung disease in rheumatoid arthritis. The European respiratory journal, . https://doi.org/10.1183/13993003.02149-2021
Zhao, Naizhuo, et al. "Fine particles matter components and interstitial lung disease in rheumatoid arthritis." The European respiratory journal vol. (2021). doi: https://doi.org/10.1183/13993003.02149-2021
Zhao N, Al-Aly Z, Zheng B, van Donkelaar A, Martin RV, Pineau CA, Bernatsky S, Backhaus B. Fine particles matter components and interstitial lung disease in rheumatoid arthritis. Eur Respir J. 2021 Dec 23; doi: 10.1183/13993003.02149-2021. Epub 2021 Dec 23. PMID: 34949700.
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Revegetation of native desert plants enhances food security and water sustainability in arid regions: Integrated modeling assessment.

The Science of the total environment

Abdullah MM, Assi A, Zubari WK, Mohtar R, Eidan H, Al Ali Z, Al Anzi B, Sharma VK, Ma X.
PMID: 34736754
Sci Total Environ. 2022 Feb 01;806:151295. doi: 10.1016/j.scitotenv.2021.151295. Epub 2021 Oct 28.

Food security and water sustainability in arid and semiarid regions are threatened by rapid population growth, declining natural resources, and global climate change. Countries in the arid regions compensate meat import by raising domestic livestock with cultivated green fodder,...

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Abdullah MM, Assi A, Zubari WK, et al. Revegetation of native desert plants enhances food security and water sustainability in arid regions: Integrated modeling assessment. Sci Total Environ. 2021;806:151295doi: 10.1016/j.scitotenv.2021.151295.
Abdullah, M. M., Assi, A., Zubari, W. K., Mohtar, R., Eidan, H., Al Ali, Z., Al Anzi, B., Sharma, V. K., & Ma, X. (2022). Revegetation of native desert plants enhances food security and water sustainability in arid regions: Integrated modeling assessment. The Science of the total environment, 806151295. https://doi.org/10.1016/j.scitotenv.2021.151295
Abdullah, Meshal M, et al. "Revegetation of native desert plants enhances food security and water sustainability in arid regions: Integrated modeling assessment." The Science of the total environment vol. 806 (2022): 151295. doi: https://doi.org/10.1016/j.scitotenv.2021.151295
Abdullah MM, Assi A, Zubari WK, Mohtar R, Eidan H, Al Ali Z, Al Anzi B, Sharma VK, Ma X. Revegetation of native desert plants enhances food security and water sustainability in arid regions: Integrated modeling assessment. Sci Total Environ. 2022 Feb 01;806:151295. doi: 10.1016/j.scitotenv.2021.151295. Epub 2021 Oct 28. PMID: 34736754.
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Association of Ambient Fine Particulate Matter Air Pollution With Kidney Transplant Outcomes.

JAMA network open

Chang SH, Merzkani M, Murad H, Wang M, Bowe B, Lentine KL, Al-Aly Z, Alhamad T.
PMID: 34618038
JAMA Netw Open. 2021 Oct 01;4(10):e2128190. doi: 10.1001/jamanetworkopen.2021.28190.

IMPORTANCE: Increased levels of ambient fine particulate matter (PM2.5) air pollution are associated with increased risks for detrimental health outcomes, but risks for patients with kidney transplants (KTs) remain unknown.OBJECTIVE: To investigate the association of PM2.5 exposure with KT...

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Chang SH, Merzkani M, Murad H, et al. Association of Ambient Fine Particulate Matter Air Pollution With Kidney Transplant Outcomes. JAMA Netw Open. 2021;4(10):e2128190doi: 10.1001/jamanetworkopen.2021.28190.
Chang, S. H., Merzkani, M., Murad, H., Wang, M., Bowe, B., Lentine, K. L., Al-Aly, Z., & Alhamad, T. (2021). Association of Ambient Fine Particulate Matter Air Pollution With Kidney Transplant Outcomes. JAMA network open, 4(10), e2128190. https://doi.org/10.1001/jamanetworkopen.2021.28190
Chang, Su-Hsin, et al. "Association of Ambient Fine Particulate Matter Air Pollution With Kidney Transplant Outcomes." JAMA network open vol. 4,10 (2021): e2128190. doi: https://doi.org/10.1001/jamanetworkopen.2021.28190
Chang SH, Merzkani M, Murad H, Wang M, Bowe B, Lentine KL, Al-Aly Z, Alhamad T. Association of Ambient Fine Particulate Matter Air Pollution With Kidney Transplant Outcomes. JAMA Netw Open. 2021 Oct 01;4(10):e2128190. doi: 10.1001/jamanetworkopen.2021.28190. PMID: 34618038; PMCID: PMC8498852.
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Biallelic ZNFX1 variants are associated with a spectrum of immuno-hematological abnormalities.

Clinical genetics

Alawbathani S, Westenberger A, Ordonez-Herrera N, Al-Hilali M, Al Hebby H, Alabbas F, Alhashem AM, Elyamany G, Megarbane A, Kose M, Alhashmi N, Al Sukaiti N, Al-Raqad M, Al-Tawalbeh S, Abu Adas Blanco O, Alkhattabi F, Sng D, Al-Ali R, Khan S, Tawamie H, Tripolszki K, Karageorgou V, Trunzo R, Al Mutairi F, Reversade B, Bauer P, Bertoli-Avella AM.
PMID: 34708404
Clin Genet. 2021 Oct 27; doi: 10.1111/cge.14081. Epub 2021 Oct 27.

Biallelic changes in the ZNFX1 gene have been recently reported to cause severe familial immunodeficiency. Through a search of our bio/databank with information from genetic testing of >55 000 individuals, we identified nine additional patients from seven families with...

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Alawbathani S, Westenberger A, Ordonez-Herrera N, et al. Biallelic ZNFX1 variants are associated with a spectrum of immuno-hematological abnormalities. Clin Genet. 2021;doi: 10.1111/cge.14081.
Alawbathani, S., Westenberger, A., Ordonez-Herrera, N., Al-Hilali, M., Al Hebby, H., Alabbas, F., Alhashem, A. M., Elyamany, G., Megarbane, A., Kose, M., Alhashmi, N., Al Sukaiti, N., Al-Raqad, M., Al-Tawalbeh, S., Abu Adas Blanco, O., Alkhattabi, F., Sng, D., Al-Ali, R., Khan, S., Tawamie, H., Tripolszki, K., Karageorgou, V., Trunzo, R., Al Mutairi, F., Reversade, B., Bauer, P., & Bertoli-Avella, A. M. (2021). Biallelic ZNFX1 variants are associated with a spectrum of immuno-hematological abnormalities. Clinical genetics, . https://doi.org/10.1111/cge.14081
Alawbathani, Salem, et al. "Biallelic ZNFX1 variants are associated with a spectrum of immuno-hematological abnormalities." Clinical genetics vol. (2021). doi: https://doi.org/10.1111/cge.14081
Alawbathani S, Westenberger A, Ordonez-Herrera N, Al-Hilali M, Al Hebby H, Alabbas F, Alhashem AM, Elyamany G, Megarbane A, Kose M, Alhashmi N, Al Sukaiti N, Al-Raqad M, Al-Tawalbeh S, Abu Adas Blanco O, Alkhattabi F, Sng D, Al-Ali R, Khan S, Tawamie H, Tripolszki K, Karageorgou V, Trunzo R, Al Mutairi F, Reversade B, Bauer P, Bertoli-Avella AM. Biallelic ZNFX1 variants are associated with a spectrum of immuno-hematological abnormalities. Clin Genet. 2021 Oct 27; doi: 10.1111/cge.14081. Epub 2021 Oct 27. PMID: 34708404.
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Correlation between corneal demarcation line depth in epithelium-off and trans-epithelium accelerated corneal cross linking and keratoconus progression.

International journal of ophthalmology

Abdel-Radi M, Eldaly Z, Abdelmotaal H, Abdelrahman R, Sayed M, Soliman K.
PMID: 32566501
Int J Ophthalmol. 2020 Jun 18;13(6):907-912. doi: 10.18240/ijo.2020.06.08. eCollection 2020.

AIM: To compare corneal demarcation line (DL) depth in both accelerated epithelium-off and trans-epithelium cross linking (CXL) using anterior segment optical coherence tomography (AS-OCT) and its relation to maximum keratometry (Kmax) progression in both techniques.METHODS: A prospective comparative interventional...

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Abdel-Radi M, Eldaly Z, Abdelmotaal H, et al. Correlation between corneal demarcation line depth in epithelium-off and trans-epithelium accelerated corneal cross linking and keratoconus progression. Int J Ophthalmol. 2020;13(6):907-912doi: 10.18240/ijo.2020.06.08.
Abdel-Radi, M., Eldaly, Z., Abdelmotaal, H., Abdelrahman, R., Sayed, M., & Soliman, K. (2020). Correlation between corneal demarcation line depth in epithelium-off and trans-epithelium accelerated corneal cross linking and keratoconus progression. International journal of ophthalmology, 13(6), 907-912. https://doi.org/10.18240/ijo.2020.06.08
Abdel-Radi, Mahmoud, et al. "Correlation between corneal demarcation line depth in epithelium-off and trans-epithelium accelerated corneal cross linking and keratoconus progression." International journal of ophthalmology vol. 13,6 (2020): 907-912. doi: https://doi.org/10.18240/ijo.2020.06.08
Abdel-Radi M, Eldaly Z, Abdelmotaal H, Abdelrahman R, Sayed M, Soliman K. Correlation between corneal demarcation line depth in epithelium-off and trans-epithelium accelerated corneal cross linking and keratoconus progression. Int J Ophthalmol. 2020 Jun 18;13(6):907-912. doi: 10.18240/ijo.2020.06.08. eCollection 2020. PMID: 32566501; PMCID: PMC7270254.
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Epstein-Barr virus infection mediated TP53 and Bcl-2 expression in nasopharyngeal carcinoma pathogenesis.

Molecular and clinical oncology

Vatte C, Al-Amri AM, Cyrus C, Chathoth S, Ahmad A, Alsayyah A, Al-Ali A.
PMID: 34754447
Mol Clin Oncol. 2021 Dec;15(6):260. doi: 10.3892/mco.2021.2422. Epub 2021 Oct 19.

Epstein Barr virus (EBV) stimulates neoplastic transformation of nasopharyngeal epithelial cells through various molecular mechanisms, predominantly affecting inactivation of tumor-suppressor genes and activation of oncogenes. EBV infection is a major risk factor for nasopharyngeal carcinoma (NPC), yet its role...

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Vatte C, Al-Amri AM, Cyrus C, et al. Epstein-Barr virus infection mediated TP53 and Bcl-2 expression in nasopharyngeal carcinoma pathogenesis. Mol Clin Oncol. 2021;15(6):260doi: 10.3892/mco.2021.2422.
Vatte, C., Al-Amri, A. M., Cyrus, C., Chathoth, S., Ahmad, A., Alsayyah, A., & Al-Ali, A. (2021). Epstein-Barr virus infection mediated TP53 and Bcl-2 expression in nasopharyngeal carcinoma pathogenesis. Molecular and clinical oncology, 15(6), 260. https://doi.org/10.3892/mco.2021.2422
Vatte, Chittibabu, et al. "Epstein-Barr virus infection mediated TP53 and Bcl-2 expression in nasopharyngeal carcinoma pathogenesis." Molecular and clinical oncology vol. 15,6 (2021): 260. doi: https://doi.org/10.3892/mco.2021.2422
Vatte C, Al-Amri AM, Cyrus C, Chathoth S, Ahmad A, Alsayyah A, Al-Ali A. Epstein-Barr virus infection mediated TP53 and Bcl-2 expression in nasopharyngeal carcinoma pathogenesis. Mol Clin Oncol. 2021 Dec;15(6):260. doi: 10.3892/mco.2021.2422. Epub 2021 Oct 19. PMID: 34754447; PMCID: PMC8569298.
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