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Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival.

Genome medicine

Engström PG, Tommei D, Stricker SH, Ender C, Pollard SM, Bertone P.
PMID: 23046790
Genome Med. 2012 Oct 09;4(10):76. doi: 10.1186/gm377. eCollection 2012.

BACKGROUND: Glioblastoma multiforme, the most common type of primary brain tumor in adults, is driven by cells with neural stem (NS) cell characteristics. Using derivation methods developed for NS cells, it is possible to expand tumorigenic stem cells continuously...

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Engström PG, Tommei D, Stricker SH, et al. Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival. Genome Med. 2012;4(10):76doi: 10.1186/gm377.
Engström, P. G., Tommei, D., Stricker, S. H., Ender, C., Pollard, S. M., & Bertone, P. (2012). Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival. Genome medicine, 4(10), 76. https://doi.org/10.1186/gm377
Engström, Pär G, et al. "Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival." Genome medicine vol. 4,10 (2012): 76. doi: https://doi.org/10.1186/gm377
Engström PG, Tommei D, Stricker SH, Ender C, Pollard SM, Bertone P. Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival. Genome Med. 2012 Oct 09;4(10):76. doi: 10.1186/gm377. eCollection 2012. PMID: 23046790; PMCID: PMC3556652.
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BET bromodomain inhibitor birabresib in mantle cell lymphoma: in vivo activity and identification of novel combinations to overcome adaptive resistance.

ESMO open

Tarantelli C, Bernasconi E, Gaudio E, Cascione L, Restelli V, Arribas AJ, Spriano F, Rinaldi A, Mensah AA, Kwee I, Ponzoni M, Zucca E, Carrassa L, Riveiro ME, Rezai K, Stathis A, Cvitkovic E, Bertoni F.
PMID: 30305939
ESMO Open. 2018 Sep 26;3(6):e000387. doi: 10.1136/esmoopen-2018-000387. eCollection 2018.

BACKGROUND: The outcome of patients affected by mantle cell lymphoma (MCL) has improved in recent years, but there is still a need for novel treatment strategies for these patients. Human cancers, including MCL, present recurrent alterations in genes that...

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Tarantelli C, Bernasconi E, Gaudio E, et al. BET bromodomain inhibitor birabresib in mantle cell lymphoma: in vivo activity and identification of novel combinations to overcome adaptive resistance. ESMO Open. 2018;3(6):e000387doi: 10.1136/esmoopen-2018-000387.
Tarantelli, C., Bernasconi, E., Gaudio, E., Cascione, L., Restelli, V., Arribas, A. J., Spriano, F., Rinaldi, A., Mensah, A. A., Kwee, I., Ponzoni, M., Zucca, E., Carrassa, L., Riveiro, M. E., Rezai, K., Stathis, A., Cvitkovic, E., & Bertoni, F. (2018). BET bromodomain inhibitor birabresib in mantle cell lymphoma: in vivo activity and identification of novel combinations to overcome adaptive resistance. ESMO open, 3(6), e000387. https://doi.org/10.1136/esmoopen-2018-000387
Tarantelli, Chiara, et al. "BET bromodomain inhibitor birabresib in mantle cell lymphoma: in vivo activity and identification of novel combinations to overcome adaptive resistance." ESMO open vol. 3,6 (2018): e000387. doi: https://doi.org/10.1136/esmoopen-2018-000387
Tarantelli C, Bernasconi E, Gaudio E, Cascione L, Restelli V, Arribas AJ, Spriano F, Rinaldi A, Mensah AA, Kwee I, Ponzoni M, Zucca E, Carrassa L, Riveiro ME, Rezai K, Stathis A, Cvitkovic E, Bertoni F. BET bromodomain inhibitor birabresib in mantle cell lymphoma: in vivo activity and identification of novel combinations to overcome adaptive resistance. ESMO Open. 2018 Sep 26;3(6):e000387. doi: 10.1136/esmoopen-2018-000387. eCollection 2018. PMID: 30305939; PMCID: PMC6173228.
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Titanium Surface Properties Influence the Biological Activity and FasL Expression of Craniofacial Stromal Cells.

Stem cells international

Conserva E, Pisciotta A, Borghi F, Nasi M, Pecorini S, Bertoni L, de Pol A, Consolo U, Carnevale G.
PMID: 30733806
Stem Cells Int. 2019 Jan 13;2019:4670560. doi: 10.1155/2019/4670560. eCollection 2019.

Mesenchymal stromal cells (MSCs) can be easily isolated form craniofacial bones during routine dentistry procedures. Due to their embryological origin from neural crest, they represent a suitable cell population to study cell-biomaterial interaction in the craniofacial field, including osteoinductive/osteointegrative...

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Conserva E, Pisciotta A, Borghi F, et al. Titanium Surface Properties Influence the Biological Activity and FasL Expression of Craniofacial Stromal Cells. Stem Cells Int. 2019;2019:4670560doi: 10.1155/2019/4670560.
Conserva, E., Pisciotta, A., Borghi, F., Nasi, M., Pecorini, S., Bertoni, L., de Pol, A., Consolo, U., & Carnevale, G. (2019). Titanium Surface Properties Influence the Biological Activity and FasL Expression of Craniofacial Stromal Cells. Stem cells international, 20194670560. https://doi.org/10.1155/2019/4670560
Conserva, Enrico, et al. "Titanium Surface Properties Influence the Biological Activity and FasL Expression of Craniofacial Stromal Cells." Stem cells international vol. 2019 (2019): 4670560. doi: https://doi.org/10.1155/2019/4670560
Conserva E, Pisciotta A, Borghi F, Nasi M, Pecorini S, Bertoni L, de Pol A, Consolo U, Carnevale G. Titanium Surface Properties Influence the Biological Activity and FasL Expression of Craniofacial Stromal Cells. Stem Cells Int. 2019 Jan 13;2019:4670560. doi: 10.1155/2019/4670560. eCollection 2019. PMID: 30733806; PMCID: PMC6348805.
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Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human.

Cell

Takashima Y, Guo G, Loos R, Nichols J, Ficz G, Krueger F, Oxley D, Santos F, Clarke J, Mansfield W, Reik W, Bertone P, Smith A.
PMID: 28843285
Cell. 2015 Jul 16;162(2):452-453. doi: 10.1016/j.cell.2015.06.052. Epub 2015 Jul 16.

No abstract available.

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Takashima Y, Guo G, Loos R, et al. Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human. Cell. 2015;162(2):452-453doi: 10.1016/j.cell.2015.06.052.
Takashima, Y., Guo, G., Loos, R., Nichols, J., Ficz, G., Krueger, F., Oxley, D., Santos, F., Clarke, J., Mansfield, W., Reik, W., Bertone, P., & Smith, A. (2015). Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human. Cell, 162(2), 452-453. https://doi.org/10.1016/j.cell.2015.06.052
Takashima, Yasuhiro, et al. "Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human." Cell vol. 162,2 (2015): 452-453. doi: https://doi.org/10.1016/j.cell.2015.06.052
Takashima Y, Guo G, Loos R, Nichols J, Ficz G, Krueger F, Oxley D, Santos F, Clarke J, Mansfield W, Reik W, Bertone P, Smith A. Resetting Transcription Factor Control Circuitry toward Ground-State Pluripotency in Human. Cell. 2015 Jul 16;162(2):452-453. doi: 10.1016/j.cell.2015.06.052. Epub 2015 Jul 16. PMID: 28843285; PMCID: PMC5628177.
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Understanding Synergistic Toxicity of Terpenes as Insecticides: Contribution of Metabolic Detoxification in .

Frontiers in plant science

Scalerandi E, Flores GA, Palacio M, Defagó MT, Carpinella MC, Valladares G, Bertoni A, Palacios SM.
PMID: 30420868
Front Plant Sci. 2018 Oct 30;9:1579. doi: 10.3389/fpls.2018.01579. eCollection 2018.

Essential oils, which are mixtures of terpenes, frequently show stronger insecticide activity, i.e., lower lethal dose 50 (LC

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Scalerandi E, Flores GA, Palacio M, et al. Understanding Synergistic Toxicity of Terpenes as Insecticides: Contribution of Metabolic Detoxification in . Front Plant Sci. 2018;9:1579doi: 10.3389/fpls.2018.01579.
Scalerandi, E., Flores, G. A., Palacio, M., Defagó, M. T., Carpinella, M. C., Valladares, G., Bertoni, A., & Palacios, S. M. (2018). Understanding Synergistic Toxicity of Terpenes as Insecticides: Contribution of Metabolic Detoxification in . Frontiers in plant science, 91579. https://doi.org/10.3389/fpls.2018.01579
Scalerandi, Esteban, et al. "Understanding Synergistic Toxicity of Terpenes as Insecticides: Contribution of Metabolic Detoxification in ." Frontiers in plant science vol. 9 (2018): 1579. doi: https://doi.org/10.3389/fpls.2018.01579
Scalerandi E, Flores GA, Palacio M, Defagó MT, Carpinella MC, Valladares G, Bertoni A, Palacios SM. Understanding Synergistic Toxicity of Terpenes as Insecticides: Contribution of Metabolic Detoxification in . Front Plant Sci. 2018 Oct 30;9:1579. doi: 10.3389/fpls.2018.01579. eCollection 2018. PMID: 30420868; PMCID: PMC6218333.
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Temperature dependence of the cooperative out-of-equilibrium elastic switching in a spin-crossover material.

Physical chemistry chemical physics : PCCP

Bertoni R, Collet E, Cailleau H, Boillot ML, Tissot A, Laisney J, Enachescu C, Lorenc M.
PMID: 30854539
Phys Chem Chem Phys. 2019 Mar 20;21(12):6606-6612. doi: 10.1039/c8cp07074a.

We present a study of a molecular material, [Feiii(3-MeO-SalEen)2]PF6, undergoing cooperative reversible photo-induced transition between low-spin state and high-spin state. By using temporally multiscale pump-probe laser spectroscopy, we explore the key parameters that influence the low-spin to high-spin conversion...

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Bertoni R, Collet E, Cailleau H, et al. Temperature dependence of the cooperative out-of-equilibrium elastic switching in a spin-crossover material. Phys Chem Chem Phys. 2019;21(12):6606-6612doi: 10.1039/c8cp07074a.
Bertoni, R., Collet, E., Cailleau, H., Boillot, M. L., Tissot, A., Laisney, J., Enachescu, C., & Lorenc, M. (2019). Temperature dependence of the cooperative out-of-equilibrium elastic switching in a spin-crossover material. Physical chemistry chemical physics : PCCP, 21(12), 6606-6612. https://doi.org/10.1039/c8cp07074a
Bertoni, Roman, et al. "Temperature dependence of the cooperative out-of-equilibrium elastic switching in a spin-crossover material." Physical chemistry chemical physics : PCCP vol. 21,12 (2019): 6606-6612. doi: https://doi.org/10.1039/c8cp07074a
Bertoni R, Collet E, Cailleau H, Boillot ML, Tissot A, Laisney J, Enachescu C, Lorenc M. Temperature dependence of the cooperative out-of-equilibrium elastic switching in a spin-crossover material. Phys Chem Chem Phys. 2019 Mar 20;21(12):6606-6612. doi: 10.1039/c8cp07074a. PMID: 30854539.
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PCSF: An R-package for network-based interpretation of high-throughput data.

PLoS computational biology

Akhmedov M, Kedaigle A, Chong RE, Montemanni R, Bertoni F, Fraenkel E, Kwee I.
PMID: 28759592
PLoS Comput Biol. 2017 Jul 31;13(7):e1005694. doi: 10.1371/journal.pcbi.1005694. eCollection 2017 Jul.

With the recent technological developments a vast amount of high-throughput data has been profiled to understand the mechanism of complex diseases. The current bioinformatics challenge is to interpret the data and underlying biology, where efficient algorithms for analyzing heterogeneous...

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Akhmedov M, Kedaigle A, Chong RE, et al. PCSF: An R-package for network-based interpretation of high-throughput data. PLoS Comput Biol. 2017;13(7):e1005694doi: 10.1371/journal.pcbi.1005694.
Akhmedov, M., Kedaigle, A., Chong, R. E., Montemanni, R., Bertoni, F., Fraenkel, E., & Kwee, I. (2017). PCSF: An R-package for network-based interpretation of high-throughput data. PLoS computational biology, 13(7), e1005694. https://doi.org/10.1371/journal.pcbi.1005694
Akhmedov, Murodzhon, et al. "PCSF: An R-package for network-based interpretation of high-throughput data." PLoS computational biology vol. 13,7 (2017): e1005694. doi: https://doi.org/10.1371/journal.pcbi.1005694
Akhmedov M, Kedaigle A, Chong RE, Montemanni R, Bertoni F, Fraenkel E, Kwee I. PCSF: An R-package for network-based interpretation of high-throughput data. PLoS Comput Biol. 2017 Jul 31;13(7):e1005694. doi: 10.1371/journal.pcbi.1005694. eCollection 2017 Jul. PMID: 28759592; PMCID: PMC5552342.
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Generation and Evolution of Spin-, Valley-, and Layer-Polarized Excited Carriers in Inversion-Symmetric WSe_{2}.

Physical review letters

Bertoni R, Nicholson CW, Waldecker L, Hübener H, Monney C, De Giovannini U, Puppin M, Hoesch M, Springate E, Chapman RT, Cacho C, Wolf M, Rubio A, Ernstorfer R.
PMID: 28084758
Phys Rev Lett. 2016 Dec 30;117(27):277201. doi: 10.1103/PhysRevLett.117.277201. Epub 2016 Dec 30.

We report the spin-selective optical excitation of carriers in inversion-symmetric bulk samples of the transition metal dichalcogenide (TMDC) WSe_{2}. Employing time- and angle-resolved photoelectron spectroscopy (trARPES) and complementary time-dependent density functional theory (TDDFT), we observe spin-, valley-, and layer-polarized...

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Bertoni R, Nicholson CW, Waldecker L, et al. Generation and Evolution of Spin-, Valley-, and Layer-Polarized Excited Carriers in Inversion-Symmetric WSe_{2}. Phys Rev Lett. 2016;117(27):277201doi: 10.1103/PhysRevLett.117.277201.
Bertoni, R., Nicholson, C. W., Waldecker, L., Hübener, H., Monney, C., De Giovannini, U., Puppin, M., Hoesch, M., Springate, E., Chapman, R. T., Cacho, C., Wolf, M., Rubio, A., & Ernstorfer, R. (2016). Generation and Evolution of Spin-, Valley-, and Layer-Polarized Excited Carriers in Inversion-Symmetric WSe_{2}. Physical review letters, 117(27), 277201. https://doi.org/10.1103/PhysRevLett.117.277201
Bertoni, R, et al. "Generation and Evolution of Spin-, Valley-, and Layer-Polarized Excited Carriers in Inversion-Symmetric WSe_{2}." Physical review letters vol. 117,27 (2016): 277201. doi: https://doi.org/10.1103/PhysRevLett.117.277201
Bertoni R, Nicholson CW, Waldecker L, Hübener H, Monney C, De Giovannini U, Puppin M, Hoesch M, Springate E, Chapman RT, Cacho C, Wolf M, Rubio A, Ernstorfer R. Generation and Evolution of Spin-, Valley-, and Layer-Polarized Excited Carriers in Inversion-Symmetric WSe_{2}. Phys Rev Lett. 2016 Dec 30;117(27):277201. doi: 10.1103/PhysRevLett.117.277201. Epub 2016 Dec 30. PMID: 28084758.
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Publisher Correction: Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer.

Nature genetics

Chen J, Guccini I, Di Mitri D, Brina D, Revandkar A, Sarti M, Pasquini E, Alajati A, Pinton S, Losa M, Civenni G, Catapano CV, Sgrignani J, Cavalli A, D'Antuono R, Asara JM, Morandi A, Chiarugi P, Crotti S, Agostini M, Montopoli M, Masgras I, Rasola A, Garcia-Escudero R, Delaleu N, Rinaldi A, Bertoni F, de Bono J, Carracedo A, Alimonti A.
PMID: 30089860
Nat Genet. 2018 Sep;50(9):1343. doi: 10.1038/s41588-018-0181-1.

In the HTML version of this article initially published, the name of author Diletta Di Mitri was miscoded in the XML such that Di was included as part of the given name instead of the family name. The error...

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Chen J, Guccini I, Di Mitri D, et al. Publisher Correction: Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer. Nat Genet. 2018;50(9):1343doi: 10.1038/s41588-018-0181-1.
Chen, J., Guccini, I., Di Mitri, D., Brina, D., Revandkar, A., Sarti, M., Pasquini, E., Alajati, A., Pinton, S., Losa, M., Civenni, G., Catapano, C. V., Sgrignani, J., Cavalli, A., D'Antuono, R., Asara, J. M., Morandi, A., Chiarugi, P., Crotti, S., Agostini, M., Montopoli, M., Masgras, I., Rasola, A., Garcia-Escudero, R., Delaleu, N., Rinaldi, A., Bertoni, F., de Bono, J., Carracedo, A., & Alimonti, A. (2018). Publisher Correction: Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer. Nature genetics, 50(9), 1343. https://doi.org/10.1038/s41588-018-0181-1
Chen, Jingjing, et al. "Publisher Correction: Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer." Nature genetics vol. 50,9 (2018): 1343. doi: https://doi.org/10.1038/s41588-018-0181-1
Chen J, Guccini I, Di Mitri D, Brina D, Revandkar A, Sarti M, Pasquini E, Alajati A, Pinton S, Losa M, Civenni G, Catapano CV, Sgrignani J, Cavalli A, D'Antuono R, Asara JM, Morandi A, Chiarugi P, Crotti S, Agostini M, Montopoli M, Masgras I, Rasola A, Garcia-Escudero R, Delaleu N, Rinaldi A, Bertoni F, de Bono J, Carracedo A, Alimonti A. Publisher Correction: Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer. Nat Genet. 2018 Sep;50(9):1343. doi: 10.1038/s41588-018-0181-1. PMID: 30089860.
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ACKR3 expression on diffuse large B cell lymphoma is required for tumor spreading and tissue infiltration.

Oncotarget

Puddinu V, Casella S, Radice E, Thelen S, Dirnhofer S, Bertoni F, Thelen M.
PMID: 29156704
Oncotarget. 2017 Jun 29;8(49):85068-85084. doi: 10.18632/oncotarget.18844. eCollection 2017 Oct 17.

Diffuse large B cell lymphoma (DLBCL) is the most frequent lymphoma accounting for more than the 30% of the cases. Involvement of extranodal sites, such as bone marrow and central nervous system, is associated with poor prognosis. A contribution...

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Puddinu V, Casella S, Radice E, et al. ACKR3 expression on diffuse large B cell lymphoma is required for tumor spreading and tissue infiltration. Oncotarget. 2017;8(49):85068-85084doi: 10.18632/oncotarget.18844.
Puddinu, V., Casella, S., Radice, E., Thelen, S., Dirnhofer, S., Bertoni, F., & Thelen, M. (2017). ACKR3 expression on diffuse large B cell lymphoma is required for tumor spreading and tissue infiltration. Oncotarget, 8(49), 85068-85084. https://doi.org/10.18632/oncotarget.18844
Puddinu, Viola, et al. "ACKR3 expression on diffuse large B cell lymphoma is required for tumor spreading and tissue infiltration." Oncotarget vol. 8,49 (2017): 85068-85084. doi: https://doi.org/10.18632/oncotarget.18844
Puddinu V, Casella S, Radice E, Thelen S, Dirnhofer S, Bertoni F, Thelen M. ACKR3 expression on diffuse large B cell lymphoma is required for tumor spreading and tissue infiltration. Oncotarget. 2017 Jun 29;8(49):85068-85084. doi: 10.18632/oncotarget.18844. eCollection 2017 Oct 17. PMID: 29156704; PMCID: PMC5689594.
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In Situ Transmission Electron Microscopy Study of Electron Beam-Induced Transformations in Colloidal Cesium Lead Halide Perovskite Nanocrystals.

ACS nano

Dang Z, Shamsi J, Palazon F, Imran M, Akkerman QA, Park S, Bertoni G, Prato M, Brescia R, Manna L.
PMID: 28122188
ACS Nano. 2017 Feb 28;11(2):2124-2132. doi: 10.1021/acsnano.6b08324. Epub 2017 Feb 02.

An increasing number of studies have recently reported the rapid degradation of hybrid and all-inorganic lead halide perovskite nanocrystals under electron beam irradiation in the transmission electron microscope, with the formation of nanometer size, high contrast particles. The nature...

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Dang Z, Shamsi J, Palazon F, et al. In Situ Transmission Electron Microscopy Study of Electron Beam-Induced Transformations in Colloidal Cesium Lead Halide Perovskite Nanocrystals. ACS Nano. 2017;11(2):2124-2132doi: 10.1021/acsnano.6b08324.
Dang, Z., Shamsi, J., Palazon, F., Imran, M., Akkerman, Q. A., Park, S., Bertoni, G., Prato, M., Brescia, R., & Manna, L. (2017). In Situ Transmission Electron Microscopy Study of Electron Beam-Induced Transformations in Colloidal Cesium Lead Halide Perovskite Nanocrystals. ACS nano, 11(2), 2124-2132. https://doi.org/10.1021/acsnano.6b08324
Dang, Zhiya, et al. "In Situ Transmission Electron Microscopy Study of Electron Beam-Induced Transformations in Colloidal Cesium Lead Halide Perovskite Nanocrystals." ACS nano vol. 11,2 (2017): 2124-2132. doi: https://doi.org/10.1021/acsnano.6b08324
Dang Z, Shamsi J, Palazon F, Imran M, Akkerman QA, Park S, Bertoni G, Prato M, Brescia R, Manna L. In Situ Transmission Electron Microscopy Study of Electron Beam-Induced Transformations in Colloidal Cesium Lead Halide Perovskite Nanocrystals. ACS Nano. 2017 Feb 28;11(2):2124-2132. doi: 10.1021/acsnano.6b08324. Epub 2017 Feb 02. PMID: 28122188; PMCID: PMC5345894.
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Predicting signatures of anisotropic resonance energy transfer in dye-functionalized nanoparticles.

RSC advances

Gil G, Corni S, Delgado A, Bertoni A, Goldoni G.
PMID: 28066545
RSC Adv. 2016 Nov 13;6(106):104648-104656. doi: 10.1039/c6ra22433d. Epub 2016 Oct 25.

Resonance energy transfer (RET) is an inherently anisotropic process. Even the simplest, well-known Förster theory, based on the transition dipole-dipole coupling, implicitly incorporates the anisotropic character of RET. In this theoretical work, we study possible signatures of the fundamental...

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Gil G, Corni S, Delgado A, et al. Predicting signatures of anisotropic resonance energy transfer in dye-functionalized nanoparticles. RSC Adv. 2016;6(106):104648-104656doi: 10.1039/c6ra22433d.
Gil, G., Corni, S., Delgado, A., Bertoni, A., & Goldoni, G. (2016). Predicting signatures of anisotropic resonance energy transfer in dye-functionalized nanoparticles. RSC advances, 6(106), 104648-104656. https://doi.org/10.1039/c6ra22433d
Gil, Gabriel, et al. "Predicting signatures of anisotropic resonance energy transfer in dye-functionalized nanoparticles." RSC advances vol. 6,106 (2016): 104648-104656. doi: https://doi.org/10.1039/c6ra22433d
Gil G, Corni S, Delgado A, Bertoni A, Goldoni G. Predicting signatures of anisotropic resonance energy transfer in dye-functionalized nanoparticles. RSC Adv. 2016 Nov 13;6(106):104648-104656. doi: 10.1039/c6ra22433d. Epub 2016 Oct 25. PMID: 28066545; PMCID: PMC5171219.
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