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Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules.

Gut microbes

Levy R, Borenstein E.
PMID: 24637600
Gut Microbes. 2014 Mar-Apr;5(2):265-70. doi: 10.4161/gmic.28261. Epub 2014 Feb 20.

The human microbiome is a key contributor to health and development. Yet little is known about the ecological forces that are at play in defining the composition of such host-associated communities. Metagenomics-based studies have uncovered clear patterns of community...

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Levy R, Borenstein E. Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules. Gut Microbes. 2014;5(2):265-70doi: 10.4161/gmic.28261.
Levy, R., & Borenstein, E. (2014). Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules. Gut microbes, 5(2), 265-70. https://doi.org/10.4161/gmic.28261
Levy, Roie, and Borenstein, Elhanan. "Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules." Gut microbes vol. 5,2 (2014): 265-70. doi: https://doi.org/10.4161/gmic.28261
Levy R, Borenstein E. Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules. Gut Microbes. 2014 Mar-Apr;5(2):265-70. doi: 10.4161/gmic.28261. Epub 2014 Feb 20. PMID: 24637600; PMCID: PMC4063856.
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Introduction to the special edition on immunotherapy and radiation oncology.

Advances in radiation oncology

Bornstein S, Formenti SC.
PMID: 30370346
Adv Radiat Oncol. 2018 Oct 23;3(4):484-485. doi: 10.1016/j.adro.2018.08.019. eCollection 2018.

No abstract available.

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Bornstein S, Formenti SC. Introduction to the special edition on immunotherapy and radiation oncology. Adv Radiat Oncol. 2018;3(4):484-485doi: 10.1016/j.adro.2018.08.019.
Bornstein, S., & Formenti, S. C. (2018). Introduction to the special edition on immunotherapy and radiation oncology. Advances in radiation oncology, 3(4), 484-485. https://doi.org/10.1016/j.adro.2018.08.019
Bornstein, Sophia, and Formenti, Silvia C. "Introduction to the special edition on immunotherapy and radiation oncology." Advances in radiation oncology vol. 3,4 (2018): 484-485. doi: https://doi.org/10.1016/j.adro.2018.08.019
Bornstein S, Formenti SC. Introduction to the special edition on immunotherapy and radiation oncology. Adv Radiat Oncol. 2018 Oct 23;3(4):484-485. doi: 10.1016/j.adro.2018.08.019. eCollection 2018. PMID: 30370346; PMCID: PMC6200900.
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An unusual presentation of Merkel cell carcinoma: a case report.

Journal of surgical case reports

Howell RS, Rice JA, Sticco K, Donovan V, Castellano M, Gillette B, Gorenstein S.
PMID: 30093989
J Surg Case Rep. 2018 Aug 04;2018(8):rjy185. doi: 10.1093/jscr/rjy185. eCollection 2018 Aug.

Merkel cell carcinoma (MCC) is a rare, aggressive carcinoma that usually arises in sun-exposed regions. MCC is a primary neuroendocrine tumor that arises in the skin. This report describes an unusual case of MCC on the buttocks that was...

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Howell RS, Rice JA, Sticco K, et al. An unusual presentation of Merkel cell carcinoma: a case report. J Surg Case Rep. 2018;2018(8):rjy185doi: 10.1093/jscr/rjy185.
Howell, R. S., Rice, J. A., Sticco, K., Donovan, V., Castellano, M., Gillette, B., & Gorenstein, S. (2018). An unusual presentation of Merkel cell carcinoma: a case report. Journal of surgical case reports, 2018(8), rjy185. https://doi.org/10.1093/jscr/rjy185
Howell, Raelina S, et al. "An unusual presentation of Merkel cell carcinoma: a case report." Journal of surgical case reports vol. 2018,8 (2018): rjy185. doi: https://doi.org/10.1093/jscr/rjy185
Howell RS, Rice JA, Sticco K, Donovan V, Castellano M, Gillette B, Gorenstein S. An unusual presentation of Merkel cell carcinoma: a case report. J Surg Case Rep. 2018 Aug 04;2018(8):rjy185. doi: 10.1093/jscr/rjy185. eCollection 2018 Aug. PMID: 30093989; PMCID: PMC6077808.
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Transgenic Testing Does Not Support a Role for Additional Candidate Genes in .

mSystems

Perlmutter JI, Meyers JE, Bordenstein SR.
PMID: 31937677
mSystems. 2020 Jan 14;5(1). doi: 10.1128/mSystems.00658-19.

Endosymbiotic bacteria in the genus

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Perlmutter JI, Meyers JE, Bordenstein SR. Transgenic Testing Does Not Support a Role for Additional Candidate Genes in . mSystems. 2020;5(1)doi: 10.1128/mSystems.00658-19.
Perlmutter, J. I., Meyers, J. E., & Bordenstein, S. R. (2020). Transgenic Testing Does Not Support a Role for Additional Candidate Genes in . mSystems, 5(1), . https://doi.org/10.1128/mSystems.00658-19
Perlmutter, Jessamyn I, et al. "Transgenic Testing Does Not Support a Role for Additional Candidate Genes in ." mSystems vol. 5,1 (2020). doi: https://doi.org/10.1128/mSystems.00658-19
Perlmutter JI, Meyers JE, Bordenstein SR. Transgenic Testing Does Not Support a Role for Additional Candidate Genes in . mSystems. 2020 Jan 14;5(1). doi: 10.1128/mSystems.00658-19. PMID: 31937677; PMCID: PMC6967388.
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Can Topology and Geometry be Measured by an Operator Measurement in Quantum Gravity?.

Physical review letters

Berenstein D, Miller A.
PMID: 28707909
Phys Rev Lett. 2017 Jun 30;118(26):261601. doi: 10.1103/PhysRevLett.118.261601. Epub 2017 Jun 26.

In the context of Lin-Lunin-Maldacena geometries, we show that superpositions of classical coherent states of trivial topology can give rise to new classical limits where the topology of spacetime has changed. We argue that this phenomenon implies that neither...

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Berenstein D, Miller A. Can Topology and Geometry be Measured by an Operator Measurement in Quantum Gravity?. Phys Rev Lett. 2017;118(26):261601doi: 10.1103/PhysRevLett.118.261601.
Berenstein, D., & Miller, A. (2017). Can Topology and Geometry be Measured by an Operator Measurement in Quantum Gravity?. Physical review letters, 118(26), 261601. https://doi.org/10.1103/PhysRevLett.118.261601
Berenstein, David, and Miller, Alexandra. "Can Topology and Geometry be Measured by an Operator Measurement in Quantum Gravity?." Physical review letters vol. 118,26 (2017): 261601. doi: https://doi.org/10.1103/PhysRevLett.118.261601
Berenstein D, Miller A. Can Topology and Geometry be Measured by an Operator Measurement in Quantum Gravity?. Phys Rev Lett. 2017 Jun 30;118(26):261601. doi: 10.1103/PhysRevLett.118.261601. Epub 2017 Jun 26. PMID: 28707909.
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Wide-angled endoillumination vs traditional scleral buckling surgery for retinal detachment - a comparative study.

Clinical ophthalmology (Auckland, N.Z.)

Cohen E, Rosenblatt A, Bornstein S, Loewenstein A, Barak A, Schwartz S.
PMID: 30804661
Clin Ophthalmol. 2019 Feb 08;13:287-293. doi: 10.2147/OPTH.S182751. eCollection 2019.

PURPOSE: To evaluate the surgical outcomes of traditional scleral buckling (TSB) compared to chandelier-assisted scleral buckling (CSB) for rhegmatogenous retinal detachment repair.PATIENTS AND METHODS: A retrospective interventional comparative case series of 49 eyes that underwent SB procedure. Medical records...

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Cohen E, Rosenblatt A, Bornstein S, et al. Wide-angled endoillumination vs traditional scleral buckling surgery for retinal detachment - a comparative study. Clin Ophthalmol. 2019;13:287-293doi: 10.2147/OPTH.S182751.
Cohen, E., Rosenblatt, A., Bornstein, S., Loewenstein, A., Barak, A., & Schwartz, S. (2019). Wide-angled endoillumination vs traditional scleral buckling surgery for retinal detachment - a comparative study. Clinical ophthalmology (Auckland, N.Z.), 13287-293. https://doi.org/10.2147/OPTH.S182751
Cohen, Eyal, et al. "Wide-angled endoillumination vs traditional scleral buckling surgery for retinal detachment - a comparative study." Clinical ophthalmology (Auckland, N.Z.) vol. 13 (2019): 287-293. doi: https://doi.org/10.2147/OPTH.S182751
Cohen E, Rosenblatt A, Bornstein S, Loewenstein A, Barak A, Schwartz S. Wide-angled endoillumination vs traditional scleral buckling surgery for retinal detachment - a comparative study. Clin Ophthalmol. 2019 Feb 08;13:287-293. doi: 10.2147/OPTH.S182751. eCollection 2019. PMID: 30804661; PMCID: PMC6371939.
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Reply to Kenyon, "Are Differences in the Oral Microbiome Due to Ancestry or Socioeconomics?".

mSystems

Yang Y, Zheng W, Cai Q, Shrubsole MJ, Pei Z, Brucker R, Steinwandel M, Bordenstein SR, Li Z, Blot WJ, Shu XO, Long J.
PMID: 32156801
mSystems. 2020 Mar 10;5(2). doi: 10.1128/mSystems.00891-19.

No abstract available.

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Yang Y, Zheng W, Cai Q, et al. Reply to Kenyon, "Are Differences in the Oral Microbiome Due to Ancestry or Socioeconomics?". mSystems. 2020;5(2)doi: 10.1128/mSystems.00891-19.
Yang, Y., Zheng, W., Cai, Q., Shrubsole, M. J., Pei, Z., Brucker, R., Steinwandel, M., Bordenstein, S. R., Li, Z., Blot, W. J., Shu, X. O., & Long, J. (2020). Reply to Kenyon, "Are Differences in the Oral Microbiome Due to Ancestry or Socioeconomics?". mSystems, 5(2), . https://doi.org/10.1128/mSystems.00891-19
Yang, Yaohua, et al. "Reply to Kenyon, "Are Differences in the Oral Microbiome Due to Ancestry or Socioeconomics?"." mSystems vol. 5,2 (2020). doi: https://doi.org/10.1128/mSystems.00891-19
Yang Y, Zheng W, Cai Q, Shrubsole MJ, Pei Z, Brucker R, Steinwandel M, Bordenstein SR, Li Z, Blot WJ, Shu XO, Long J. Reply to Kenyon, "Are Differences in the Oral Microbiome Due to Ancestry or Socioeconomics?". mSystems. 2020 Mar 10;5(2). doi: 10.1128/mSystems.00891-19. PMID: 32156801; PMCID: PMC7065519.
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Pain and other symptoms in patients with chronic benign paroxysmal positional vertigo (BPPV).

Scandinavian journal of pain

Iglebekk W, Tjell C, Borenstein P.
PMID: 29913653
Scand J Pain. 2013 Oct 01;4(4):233-240. doi: 10.1016/j.sjpain.2013.06.004.

Background and aim A diagnosis of chronic benign paroxysmal positional vertigo (BPPV) is based on brief attacks of rotatory vertigo and concomitant nystagmus elicited by rapid changes in head position relative to gravity. However, the clinical course of BPPV...

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Iglebekk W, Tjell C, Borenstein P. Pain and other symptoms in patients with chronic benign paroxysmal positional vertigo (BPPV). Scand J Pain. 2013;4(4):233-240doi: 10.1016/j.sjpain.2013.06.004.
Iglebekk, W., Tjell, C., & Borenstein, P. (2013). Pain and other symptoms in patients with chronic benign paroxysmal positional vertigo (BPPV). Scandinavian journal of pain, 4(4), 233-240. https://doi.org/10.1016/j.sjpain.2013.06.004
Iglebekk, Wenche, et al. "Pain and other symptoms in patients with chronic benign paroxysmal positional vertigo (BPPV)." Scandinavian journal of pain vol. 4,4 (2013): 233-240. doi: https://doi.org/10.1016/j.sjpain.2013.06.004
Iglebekk W, Tjell C, Borenstein P. Pain and other symptoms in patients with chronic benign paroxysmal positional vertigo (BPPV). Scand J Pain. 2013 Oct 01;4(4):233-240. doi: 10.1016/j.sjpain.2013.06.004. PMID: 29913653.
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Magnetic anisotropy in trigonal planar Fe(ii) bis(trimethylsilyl)amido complexes of the type [Fe{N(SiMe.

Dalton transactions (Cambridge, England : 2003)

Bodenstein T, Eichhöfer A.
PMID: 31538172
Dalton Trans. 2019 Oct 22;48(41):15699-15712. doi: 10.1039/c9dt01702j.

Systematic ac (alternating current) magnetic investigations on four new trigonal planar high-spin Fe2+ complexes [Fe{N(SiMe3)2}2L] reveal that complexes which comprise a phosphine or arsine type ligand (L = PPh3, PMe3 and AsPh3) display slow magnetic relaxation at temperatures below...

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Bodenstein T, Eichhöfer A. Magnetic anisotropy in trigonal planar Fe(ii) bis(trimethylsilyl)amido complexes of the type [Fe{N(SiMe. Dalton Trans. 2019;48(41):15699-15712doi: 10.1039/c9dt01702j.
Bodenstein, T., & Eichhöfer, A. (2019). Magnetic anisotropy in trigonal planar Fe(ii) bis(trimethylsilyl)amido complexes of the type [Fe{N(SiMe. Dalton transactions (Cambridge, England : 2003), 48(41), 15699-15712. https://doi.org/10.1039/c9dt01702j
Bodenstein, Tilmann, and Eichhöfer, Andreas. "Magnetic anisotropy in trigonal planar Fe(ii) bis(trimethylsilyl)amido complexes of the type [Fe{N(SiMe." Dalton transactions (Cambridge, England : 2003) vol. 48,41 (2019): 15699-15712. doi: https://doi.org/10.1039/c9dt01702j
Bodenstein T, Eichhöfer A. Magnetic anisotropy in trigonal planar Fe(ii) bis(trimethylsilyl)amido complexes of the type [Fe{N(SiMe. Dalton Trans. 2019 Oct 22;48(41):15699-15712. doi: 10.1039/c9dt01702j. PMID: 31538172.
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Intersubband Auger recombination and population inversion in quantum-well subbands.

Physical review. B, Condensed matter

Borenstain S, Katz J.
PMID: 9947894
Phys Rev B Condens Matter. 1989 May 15;39(15):10852-10857. doi: 10.1103/physrevb.39.10852.

No abstract available.

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Borenstain S, Katz J. Intersubband Auger recombination and population inversion in quantum-well subbands. Phys Rev B Condens Matter. 1989;39(15):10852-10857doi: 10.1103/physrevb.39.10852.
Borenstain, S., & Katz, J. (1989). Intersubband Auger recombination and population inversion in quantum-well subbands. Physical review. B, Condensed matter, 39(15), 10852-10857. https://doi.org/10.1103/physrevb.39.10852
Borenstain, and Katz. "Intersubband Auger recombination and population inversion in quantum-well subbands." Physical review. B, Condensed matter vol. 39,15 (1989): 10852-10857. doi: https://doi.org/10.1103/physrevb.39.10852
Borenstain S, Katz J. Intersubband Auger recombination and population inversion in quantum-well subbands. Phys Rev B Condens Matter. 1989 May 15;39(15):10852-10857. doi: 10.1103/physrevb.39.10852. PMID: 9947894.
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Highly accurate protein structure prediction with AlphaFold.

Nature

Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, Tunyasuvunakool K, Bates R, Žídek A, Potapenko A, Bridgland A, Meyer C, Kohl SAA, Ballard AJ, Cowie A, Romera-Paredes B, Nikolov S, Jain R, Adler J, Back T, Petersen S, Reiman D, Clancy E, Zielinski M, Steinegger M, Pacholska M, Berghammer T, Bodenstein S, Silver D, Vinyals O, Senior AW, Kavukcuoglu K, Kohli P, Hassabis D.
PMID: 34265844
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.

Proteins are essential to life, and understanding their structure can facilitate a mechanistic understanding of their function. Through an enormous experimental effort

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Jumper J, Evans R, Pritzel A, et al. Highly accurate protein structure prediction with AlphaFold. Nature. 2021;596(7873):583-589doi: 10.1038/s41586-021-03819-2.
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., Bridgland, A., Meyer, C., Kohl, S. A. A., Ballard, A. J., Cowie, A., Romera-Paredes, B., Nikolov, S., Jain, R., Adler, J., Back, T., Petersen, S., Reiman, D., Clancy, E., Zielinski, M., Steinegger, M., Pacholska, M., Berghammer, T., Bodenstein, S., Silver, D., Vinyals, O., Senior, A. W., Kavukcuoglu, K., Kohli, P., & Hassabis, D. (2021). Highly accurate protein structure prediction with AlphaFold. Nature, 596(7873), 583-589. https://doi.org/10.1038/s41586-021-03819-2
Jumper, John, et al. "Highly accurate protein structure prediction with AlphaFold." Nature vol. 596,7873 (2021): 583-589. doi: https://doi.org/10.1038/s41586-021-03819-2
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, Tunyasuvunakool K, Bates R, Žídek A, Potapenko A, Bridgland A, Meyer C, Kohl SAA, Ballard AJ, Cowie A, Romera-Paredes B, Nikolov S, Jain R, Adler J, Back T, Petersen S, Reiman D, Clancy E, Zielinski M, Steinegger M, Pacholska M, Berghammer T, Bodenstein S, Silver D, Vinyals O, Senior AW, Kavukcuoglu K, Kohli P, Hassabis D. Highly accurate protein structure prediction with AlphaFold. Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15. PMID: 34265844; PMCID: PMC8371605.
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Loss of Hs3st3a1 or Hs3st3b1 enzymes alters heparan sulfate to reduce epithelial morphogenesis and adult salivary gland function.

Matrix biology : journal of the International Society for Matrix Biology

Patel VN, Pineda DL, Berenstein E, Hauser BR, Choi S, Prochazkova M, Zheng C, Goldsmith CM, van Kuppevelt TH, Kulkarni A, Song Y, Linhardt RJ, Chibly AM, Hoffman MP.
PMID: 34653670
Matrix Biol. 2021 Sep;103:37-57. doi: 10.1016/j.matbio.2021.10.002. Epub 2021 Oct 12.

Heparan sulfate 3-O-sulfotransferases generate highly sulfated but rare 3-O-sulfated heparan sulfate (HS) epitopes on cell surfaces and in the extracellular matrix. Previous ex vivo experiments suggested functional redundancy exists among the family of seven enzymes but that Hs3st3a1 and...

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Patel VN, Pineda DL, Berenstein E, et al. Loss of Hs3st3a1 or Hs3st3b1 enzymes alters heparan sulfate to reduce epithelial morphogenesis and adult salivary gland function. Matrix Biol. 2021;103:37-57doi: 10.1016/j.matbio.2021.10.002.
Patel, V. N., Pineda, D. L., Berenstein, E., Hauser, B. R., Choi, S., Prochazkova, M., Zheng, C., Goldsmith, C. M., van Kuppevelt, T. H., Kulkarni, A., Song, Y., Linhardt, R. J., Chibly, A. M., & Hoffman, M. P. (2021). Loss of Hs3st3a1 or Hs3st3b1 enzymes alters heparan sulfate to reduce epithelial morphogenesis and adult salivary gland function. Matrix biology : journal of the International Society for Matrix Biology, 10337-57. https://doi.org/10.1016/j.matbio.2021.10.002
Patel, Vaishali N, et al. "Loss of Hs3st3a1 or Hs3st3b1 enzymes alters heparan sulfate to reduce epithelial morphogenesis and adult salivary gland function." Matrix biology : journal of the International Society for Matrix Biology vol. 103 (2021): 37-57. doi: https://doi.org/10.1016/j.matbio.2021.10.002
Patel VN, Pineda DL, Berenstein E, Hauser BR, Choi S, Prochazkova M, Zheng C, Goldsmith CM, van Kuppevelt TH, Kulkarni A, Song Y, Linhardt RJ, Chibly AM, Hoffman MP. Loss of Hs3st3a1 or Hs3st3b1 enzymes alters heparan sulfate to reduce epithelial morphogenesis and adult salivary gland function. Matrix Biol. 2021 Sep;103:37-57. doi: 10.1016/j.matbio.2021.10.002. Epub 2021 Oct 12. PMID: 34653670; PMCID: PMC8629026.
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Showing 25 to 36 of 247 entries