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Inflammasome-induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses.

Journal of extracellular vesicles

Budden CF, Gearing LJ, Kaiser R, Standke L, Hertzog PJ, Latz E.
PMID: 34377374
J Extracell Vesicles. 2021 Aug;10(10):e12127. doi: 10.1002/jev2.12127. Epub 2021 Aug 02.

Infectious organisms and damage of cells can activate inflammasomes, which mediate tissue inflammation and adaptive immunity. These mechanisms evolved to curb the spread of microbes and to induce repair of the damaged tissue. Chronic activation of inflammasomes, however, contributes...

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Budden CF, Gearing LJ, Kaiser R, et al. Inflammasome-induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses. J Extracell Vesicles. 2021;10(10):e12127doi: 10.1002/jev2.12127.
Budden, C. F., Gearing, L. J., Kaiser, R., Standke, L., Hertzog, P. J., & Latz, E. (2021). Inflammasome-induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses. Journal of extracellular vesicles, 10(10), e12127. https://doi.org/10.1002/jev2.12127
Budden, Christina F, et al. "Inflammasome-induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses." Journal of extracellular vesicles vol. 10,10 (2021): e12127. doi: https://doi.org/10.1002/jev2.12127
Budden CF, Gearing LJ, Kaiser R, Standke L, Hertzog PJ, Latz E. Inflammasome-induced extracellular vesicles harbour distinct RNA signatures and alter bystander macrophage responses. J Extracell Vesicles. 2021 Aug;10(10):e12127. doi: 10.1002/jev2.12127. Epub 2021 Aug 02. PMID: 34377374; PMCID: PMC8329986.
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Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla.

PloS one

Rahman N, Xu K, Omer M, Budde MD, Brown A, Baron CA.
PMID: 34739479
PLoS One. 2021 Nov 05;16(11):e0255711. doi: 10.1371/journal.pone.0255711. eCollection 2021.

BACKGROUND AND PURPOSE: Microstructure imaging with advanced diffusion MRI (dMRI) techniques have shown increased sensitivity and specificity to microstructural changes in various disease and injury models. Oscillating gradient spin echo (OGSE) dMRI, implemented by varying the oscillating gradient frequency,...

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Rahman N, Xu K, Omer M, et al. Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla. PLoS One. 2021;16(11):e0255711doi: 10.1371/journal.pone.0255711.
Rahman, N., Xu, K., Omer, M., Budde, M. D., Brown, A., & Baron, C. A. (2021). Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla. PloS one, 16(11), e0255711. https://doi.org/10.1371/journal.pone.0255711
Rahman, Naila, et al. "Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla." PloS one vol. 16,11 (2021): e0255711. doi: https://doi.org/10.1371/journal.pone.0255711
Rahman N, Xu K, Omer M, Budde MD, Brown A, Baron CA. Test-retest reproducibility of in vivo oscillating gradient and microscopic anisotropy diffusion MRI in mice at 9.4 Tesla. PLoS One. 2021 Nov 05;16(11):e0255711. doi: 10.1371/journal.pone.0255711. eCollection 2021. PMID: 34739479; PMCID: PMC8570471.
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NCCN Guidelines® Insights: B-Cell Lymphomas, Version 5.2021.

Journal of the National Comprehensive Cancer Network : JNCCN

Zelenetz AD, Gordon LI, Chang JE, Christian B, Abramson JS, Advani RH, Bartlett NL, Budde LE, Caimi PF, De Vos S, Dholaria B, Fakhri B, Fayad LE, Glenn MJ, Habermann TM, Hernandez-Ilizaliturri F, Hsi E, Hu B, Kaminski MS, Kelsey CR, Khan N, Krivacic S, LaCasce AS, Lim M, Narkhede M, Rabinovitch R, Ramakrishnan P, Reid E, Roberts KB, Saeed H, Smith SD, Svoboda J, Swinnen LJ, Tuscano J, Vose JM, Dwyer MA, Sundar H.
PMID: 34781267
J Natl Compr Canc Netw. 2021 Nov;19(11):1218-1230. doi: 10.6004/jnccn.2021.0054.

In the last decade, a better understanding of the molecular pathogenesis of B-cell non-Hodgkin lymphomas has resulted in the development of novel targeted therapies, such as small molecule inhibitors of select kinases in the B-cell receptor pathway, antibody-drug conjugates,...

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Zelenetz AD, Gordon LI, Chang JE, et al. NCCN Guidelines® Insights: B-Cell Lymphomas, Version 5.2021. J Natl Compr Canc Netw. 2021;19(11):1218-1230doi: 10.6004/jnccn.2021.0054.
Zelenetz, A. D., Gordon, L. I., Chang, J. E., Christian, B., Abramson, J. S., Advani, R. H., Bartlett, N. L., Budde, L. E., Caimi, P. F., De Vos, S., Dholaria, B., Fakhri, B., Fayad, L. E., Glenn, M. J., Habermann, T. M., Hernandez-Ilizaliturri, F., Hsi, E., Hu, B., Kaminski, M. S., Kelsey, C. R., Khan, N., Krivacic, S., LaCasce, A. S., Lim, M., Narkhede, M., Rabinovitch, R., Ramakrishnan, P., Reid, E., Roberts, K. B., Saeed, H., Smith, S. D., Svoboda, J., Swinnen, L. J., Tuscano, J., Vose, J. M., Dwyer, M. A., & Sundar, H. (2021). NCCN Guidelines® Insights: B-Cell Lymphomas, Version 5.2021. Journal of the National Comprehensive Cancer Network : JNCCN, 19(11), 1218-1230. https://doi.org/10.6004/jnccn.2021.0054
Zelenetz, Andrew D, et al. "NCCN Guidelines® Insights: B-Cell Lymphomas, Version 5.2021." Journal of the National Comprehensive Cancer Network : JNCCN vol. 19,11 (2021): 1218-1230. doi: https://doi.org/10.6004/jnccn.2021.0054
Zelenetz AD, Gordon LI, Chang JE, Christian B, Abramson JS, Advani RH, Bartlett NL, Budde LE, Caimi PF, De Vos S, Dholaria B, Fakhri B, Fayad LE, Glenn MJ, Habermann TM, Hernandez-Ilizaliturri F, Hsi E, Hu B, Kaminski MS, Kelsey CR, Khan N, Krivacic S, LaCasce AS, Lim M, Narkhede M, Rabinovitch R, Ramakrishnan P, Reid E, Roberts KB, Saeed H, Smith SD, Svoboda J, Swinnen LJ, Tuscano J, Vose JM, Dwyer MA, Sundar H. NCCN Guidelines® Insights: B-Cell Lymphomas, Version 5.2021. J Natl Compr Canc Netw. 2021 Nov;19(11):1218-1230. doi: 10.6004/jnccn.2021.0054. PMID: 34781267.
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Data for engineering lipid metabolism of Chinese hamster ovary (CHO) cells for enhanced recombinant protein production.

Data in brief

Budge JD, Knight TJ, Povey J, Roobol J, Brown IR, Singh G, Dean A, Turner S, Jaques CM, Young RJ, Racher AJ, Smales CM.
PMID: 32071989
Data Brief. 2020 Jan 31;29:105217. doi: 10.1016/j.dib.2020.105217. eCollection 2020 Apr.

The data presented in this article relates to the manuscript entitled 'Engineering of Chinese hamster ovary cell lipid metabolism results in an expanded ER and enhanced recombinant biotherapeutic protein production', published in the Journal Metabolic Engineering [1]. In the...

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Budge JD, Knight TJ, Povey J, et al. Data for engineering lipid metabolism of Chinese hamster ovary (CHO) cells for enhanced recombinant protein production. Data Brief. 2020;29:105217doi: 10.1016/j.dib.2020.105217.
Budge, J. D., Knight, T. J., Povey, J., Roobol, J., Brown, I. R., Singh, G., Dean, A., Turner, S., Jaques, C. M., Young, R. J., Racher, A. J., & Smales, C. M. (2020). Data for engineering lipid metabolism of Chinese hamster ovary (CHO) cells for enhanced recombinant protein production. Data in brief, 29105217. https://doi.org/10.1016/j.dib.2020.105217
Budge, James D, et al. "Data for engineering lipid metabolism of Chinese hamster ovary (CHO) cells for enhanced recombinant protein production." Data in brief vol. 29 (2020): 105217. doi: https://doi.org/10.1016/j.dib.2020.105217
Budge JD, Knight TJ, Povey J, Roobol J, Brown IR, Singh G, Dean A, Turner S, Jaques CM, Young RJ, Racher AJ, Smales CM. Data for engineering lipid metabolism of Chinese hamster ovary (CHO) cells for enhanced recombinant protein production. Data Brief. 2020 Jan 31;29:105217. doi: 10.1016/j.dib.2020.105217. eCollection 2020 Apr. PMID: 32071989; PMCID: PMC7013132.
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Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations.

PeerJ

León-Zayas R, McCargar M, Drew JA, Biddle JF.
PMID: 33005496
PeerJ. 2020 Sep 21;8:e10026. doi: 10.7717/peerj.10026. eCollection 2020.

The benthic environments of coral reefs are heavily shaped by physiochemical factors, but also the ecological interactions of the animals and plants in the reef ecosystem. Microbial populations may be shared within the ecosystem of sediments, seagrasses and reef...

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León-Zayas R, McCargar M, Drew JA, et al. Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations. PeerJ. 2020;8:e10026doi: 10.7717/peerj.10026.
León-Zayas, R., McCargar, M., Drew, J. A., & Biddle, J. F. (2020). Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations. PeerJ, 8e10026. https://doi.org/10.7717/peerj.10026
León-Zayas, Rosa, et al. "Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations." PeerJ vol. 8 (2020): e10026. doi: https://doi.org/10.7717/peerj.10026
León-Zayas R, McCargar M, Drew JA, Biddle JF. Microbiomes of fish, sediment and seagrass suggest connectivity of coral reef microbial populations. PeerJ. 2020 Sep 21;8:e10026. doi: 10.7717/peerj.10026. eCollection 2020. PMID: 33005496; PMCID: PMC7513772.
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Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits.

Frontiers in plant science

Bustamante CA, Monti LL, Gabilondo J, Scossa F, Valentini G, Budde CO, Lara MV, Fernie AR, Drincovich MF.
PMID: 27746802
Front Plant Sci. 2016 Sep 30;7:1478. doi: 10.3389/fpls.2016.01478. eCollection 2016.

Reconfiguration of the metabolome is a key component involved in the acclimation to cold in plants; however, few studies have been devoted to the analysis of the overall metabolite changes after cold storage of fruits prior to consumption. Here,...

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Bustamante CA, Monti LL, Gabilondo J, et al. Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Front Plant Sci. 2016;7:1478doi: 10.3389/fpls.2016.01478.
Bustamante, C. A., Monti, L. L., Gabilondo, J., Scossa, F., Valentini, G., Budde, C. O., Lara, M. V., Fernie, A. R., & Drincovich, M. F. (2016). Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Frontiers in plant science, 71478. https://doi.org/10.3389/fpls.2016.01478
Bustamante, Claudia A, et al. "Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits." Frontiers in plant science vol. 7 (2016): 1478. doi: https://doi.org/10.3389/fpls.2016.01478
Bustamante CA, Monti LL, Gabilondo J, Scossa F, Valentini G, Budde CO, Lara MV, Fernie AR, Drincovich MF. Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Front Plant Sci. 2016 Sep 30;7:1478. doi: 10.3389/fpls.2016.01478. eCollection 2016. PMID: 27746802; PMCID: PMC5044465.
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Follow-up Soon After Discharge May Not Reduce COPD Readmissions.

Chronic obstructive pulmonary diseases (Miami, Fla.)

Budde J, Agarwal P, Mazumdar M, Braman SS.
PMID: 30974052
Chronic Obstr Pulm Dis. 2019 Apr 09;6(2):129-131. doi: 10.15326/jcopdf.6.2.2018.0149. Epub 2019 Apr 09.

We evaluated whether visiting a primary care provider (PCP) or medical subspecialist within 10 days of discharge reduces 30-day readmissions following hospitalization for acute exacerbation of chronic obstructive pulmonary disease (AECOPD). Data were retrospectively collected from electronic health records...

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Budde J, Agarwal P, Mazumdar M, et al. Follow-up Soon After Discharge May Not Reduce COPD Readmissions. Chronic Obstr Pulm Dis. 2019;6(2):129-131doi: 10.15326/jcopdf.6.2.2018.0149.
Budde, J., Agarwal, P., Mazumdar, M., & Braman, S. S. (2019). Follow-up Soon After Discharge May Not Reduce COPD Readmissions. Chronic obstructive pulmonary diseases (Miami, Fla.), 6(2), 129-131. https://doi.org/10.15326/jcopdf.6.2.2018.0149
Budde, Julia, et al. "Follow-up Soon After Discharge May Not Reduce COPD Readmissions." Chronic obstructive pulmonary diseases (Miami, Fla.) vol. 6,2 (2019): 129-131. doi: https://doi.org/10.15326/jcopdf.6.2.2018.0149
Budde J, Agarwal P, Mazumdar M, Braman SS. Follow-up Soon After Discharge May Not Reduce COPD Readmissions. Chronic Obstr Pulm Dis. 2019 Apr 09;6(2):129-131. doi: 10.15326/jcopdf.6.2.2018.0149. Epub 2019 Apr 09. PMID: 30974052; PMCID: PMC6596433.
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A draft genome for a species of .

Journal of nematology

Ragsdale EJ, Koutsovoulos G, Biddle JF.
PMID: 31814372
J Nematol. 2019;51:1-4. doi: 10.21307/jofnem-2019-068.

No abstract available.

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Ragsdale EJ, Koutsovoulos G, Biddle JF. A draft genome for a species of . J Nematol. 2019;51:1-4doi: 10.21307/jofnem-2019-068.
Ragsdale, E. J., Koutsovoulos, G., & Biddle, J. F. (2019). A draft genome for a species of . Journal of nematology, 511-4. https://doi.org/10.21307/jofnem-2019-068
Ragsdale, Erik J, et al. "A draft genome for a species of ." Journal of nematology vol. 51 (2019): 1-4. doi: https://doi.org/10.21307/jofnem-2019-068
Ragsdale EJ, Koutsovoulos G, Biddle JF. A draft genome for a species of . J Nematol. 2019;51:1-4. doi: 10.21307/jofnem-2019-068. PMID: 31814372; PMCID: PMC6909384.
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Behavioral Outcomes Differ between Rotational Acceleration and Blast Mechanisms of Mild Traumatic Brain Injury.

Frontiers in neurology

Stemper BD, Shah AS, Budde MD, Olsen CM, Glavaski-Joksimovic A, Kurpad SN, McCrea M, Pintar FA.
PMID: 27014184
Front Neurol. 2016 Mar 14;7:31. doi: 10.3389/fneur.2016.00031. eCollection 2016.

Mild traumatic brain injury (mTBI) can result from a number of mechanisms, including blunt impact, head rotational acceleration, exposure to blast, and penetration of projectiles. Mechanism is likely to influence the type, severity, and chronicity of outcomes. The objective...

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Stemper BD, Shah AS, Budde MD, et al. Behavioral Outcomes Differ between Rotational Acceleration and Blast Mechanisms of Mild Traumatic Brain Injury. Front Neurol. 2016;7:31doi: 10.3389/fneur.2016.00031.
Stemper, B. D., Shah, A. S., Budde, M. D., Olsen, C. M., Glavaski-Joksimovic, A., Kurpad, S. N., McCrea, M., & Pintar, F. A. (2016). Behavioral Outcomes Differ between Rotational Acceleration and Blast Mechanisms of Mild Traumatic Brain Injury. Frontiers in neurology, 731. https://doi.org/10.3389/fneur.2016.00031
Stemper, Brian D, et al. "Behavioral Outcomes Differ between Rotational Acceleration and Blast Mechanisms of Mild Traumatic Brain Injury." Frontiers in neurology vol. 7 (2016): 31. doi: https://doi.org/10.3389/fneur.2016.00031
Stemper BD, Shah AS, Budde MD, Olsen CM, Glavaski-Joksimovic A, Kurpad SN, McCrea M, Pintar FA. Behavioral Outcomes Differ between Rotational Acceleration and Blast Mechanisms of Mild Traumatic Brain Injury. Front Neurol. 2016 Mar 14;7:31. doi: 10.3389/fneur.2016.00031. eCollection 2016. PMID: 27014184; PMCID: PMC4789366.
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Microbiome effects on immunity, health and disease in the lung.

Clinical & translational immunology

Shukla SD, Budden KF, Neal R, Hansbro PM.
PMID: 28435675
Clin Transl Immunology. 2017 Mar 10;6(3):e133. doi: 10.1038/cti.2017.6. eCollection 2017 Mar.

Chronic respiratory diseases, including asthma, chronic obstructive pulmonary disease (COPD) and cystic fibrosis (CF), are among the leading causes of mortality and morbidity worldwide. In the past decade, the interest in the role of microbiome in maintaining lung health...

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Shukla SD, Budden KF, Neal R, et al. Microbiome effects on immunity, health and disease in the lung. Clin Transl Immunology. 2017;6(3):e133doi: 10.1038/cti.2017.6.
Shukla, S. D., Budden, K. F., Neal, R., & Hansbro, P. M. (2017). Microbiome effects on immunity, health and disease in the lung. Clinical & translational immunology, 6(3), e133. https://doi.org/10.1038/cti.2017.6
Shukla, Shakti D, et al. "Microbiome effects on immunity, health and disease in the lung." Clinical & translational immunology vol. 6,3 (2017): e133. doi: https://doi.org/10.1038/cti.2017.6
Shukla SD, Budden KF, Neal R, Hansbro PM. Microbiome effects on immunity, health and disease in the lung. Clin Transl Immunology. 2017 Mar 10;6(3):e133. doi: 10.1038/cti.2017.6. eCollection 2017 Mar. PMID: 28435675; PMCID: PMC5382435.
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So you think you can edit?.

Molecular biology of the cell

Budde PP.
PMID: 25169831
Mol Biol Cell. 2014 Sep 01;25(17):2539-41. doi: 10.1091/mbc.E14-02-0719.

This article presents one scientist's perspective on the transition from life at the bench to an editorial career.

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Budde PP. So you think you can edit?. Mol Biol Cell. 2014;25(17):2539-41doi: 10.1091/mbc.E14-02-0719.
Budde, P. P. (2014). So you think you can edit?. Molecular biology of the cell, 25(17), 2539-41. https://doi.org/10.1091/mbc.E14-02-0719
Budde, Priya Prakash. "So you think you can edit?." Molecular biology of the cell vol. 25,17 (2014): 2539-41. doi: https://doi.org/10.1091/mbc.E14-02-0719
Budde PP. So you think you can edit?. Mol Biol Cell. 2014 Sep 01;25(17):2539-41. doi: 10.1091/mbc.E14-02-0719. PMID: 25169831; PMCID: PMC4148244.
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Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples.

Frontiers in microbiology

Martino AJ, Rhodes ME, Biddle JF, Brandt LD, Tomsho LP, House CH.
PMID: 22319519
Front Microbiol. 2012 Jan 23;3:17. doi: 10.3389/fmicb.2012.00017. eCollection 2012.

A degenerate polymerase chain reaction (PCR)-based method of whole-genome amplification, designed to work fluidly with 454 sequencing technology, was developed and tested for use on deep marine subsurface DNA samples. While optimized here for use with Roche 454 technology,...

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Martino AJ, Rhodes ME, Biddle JF, et al. Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples. Front Microbiol. 2012;3:17doi: 10.3389/fmicb.2012.00017.
Martino, A. J., Rhodes, M. E., Biddle, J. F., Brandt, L. D., Tomsho, L. P., & House, C. H. (2012). Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples. Frontiers in microbiology, 317. https://doi.org/10.3389/fmicb.2012.00017
Martino, Amanda J, et al. "Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples." Frontiers in microbiology vol. 3 (2012): 17. doi: https://doi.org/10.3389/fmicb.2012.00017
Martino AJ, Rhodes ME, Biddle JF, Brandt LD, Tomsho LP, House CH. Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples. Front Microbiol. 2012 Jan 23;3:17. doi: 10.3389/fmicb.2012.00017. eCollection 2012. PMID: 22319519; PMCID: PMC3263435.
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Showing 13 to 24 of 171 entries