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Comparative analysis of differentially abundant proteins quantified by LC-MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples.

Clinical proteomics

Sturtz LA, Wang G, Shah P, Searfoss R, Raj-Kumar PK, Hooke JA, Fantacone-Campbell JL, Deyarmin B, Cutler ML, Sarangarajan R, Narain NR, Hu H, Kiebish MA, Kovatich AJ, Shriver CD.
PMID: 33292179
Clin Proteomics. 2020 Nov 07;17(1):40. doi: 10.1186/s12014-020-09300-y.

BACKGROUND: Proteomic studies are typically conducted using flash-frozen (FF) samples utilizing tandem mass spectrometry (MS). However, FF specimens are comprised of multiple cell types, making it difficult to ascertain the proteomic profiles of specific cells. Conversely, OCT-embedded (Optimal Cutting...

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Sturtz LA, Wang G, Shah P, et al. Comparative analysis of differentially abundant proteins quantified by LC-MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples. Clin Proteomics. 2020;17(1):40doi: 10.1186/s12014-020-09300-y.
Sturtz, L. A., Wang, G., Shah, P., Searfoss, R., Raj-Kumar, P. K., Hooke, J. A., Fantacone-Campbell, J. L., Deyarmin, B., Cutler, M. L., Sarangarajan, R., Narain, N. R., Hu, H., Kiebish, M. A., Kovatich, A. J., & Shriver, C. D. (2020). Comparative analysis of differentially abundant proteins quantified by LC-MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples. Clinical proteomics, 17(1), 40. https://doi.org/10.1186/s12014-020-09300-y
Sturtz, Lori A, et al. "Comparative analysis of differentially abundant proteins quantified by LC-MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples." Clinical proteomics vol. 17,1 (2020): 40. doi: https://doi.org/10.1186/s12014-020-09300-y
Sturtz LA, Wang G, Shah P, Searfoss R, Raj-Kumar PK, Hooke JA, Fantacone-Campbell JL, Deyarmin B, Cutler ML, Sarangarajan R, Narain NR, Hu H, Kiebish MA, Kovatich AJ, Shriver CD. Comparative analysis of differentially abundant proteins quantified by LC-MS/MS between flash frozen and laser microdissected OCT-embedded breast tumor samples. Clin Proteomics. 2020 Nov 07;17(1):40. doi: 10.1186/s12014-020-09300-y. PMID: 33292179; PMCID: PMC7648272.
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Risk of New Hospitalization Post-COVID-19 Infection for Non-COVID-19 Conditions.

Journal of the American Board of Family Medicine : JABFM

Mainous AG, Rooks BJ, Orlando FA.
PMID: 34535516
J Am Board Fam Med. 2021 Sep-Oct;34(5):907-913. doi: 10.3122/jabfm.2021.05.210170.

INTRODUCTION: Reports of post-acute sequelae of COVID-19 continue to emerge, but it remains unclear how the severity of a patient's COVID-19 infection affects risk for future hospitalizations for non-COVID-19 problems.METHODS: An analysis of electronic health records (EHR) was performed...

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Mainous AG, Rooks BJ, Orlando FA. Risk of New Hospitalization Post-COVID-19 Infection for Non-COVID-19 Conditions. J Am Board Fam Med. 2021;34(5):907-913doi: 10.3122/jabfm.2021.05.210170.
Mainous, A. G., Rooks, B. J., & Orlando, F. A. (2021). Risk of New Hospitalization Post-COVID-19 Infection for Non-COVID-19 Conditions. Journal of the American Board of Family Medicine : JABFM, 34(5), 907-913. https://doi.org/10.3122/jabfm.2021.05.210170
Mainous, Arch G, et al. "Risk of New Hospitalization Post-COVID-19 Infection for Non-COVID-19 Conditions." Journal of the American Board of Family Medicine : JABFM vol. 34,5 (2021): 907-913. doi: https://doi.org/10.3122/jabfm.2021.05.210170
Mainous AG, Rooks BJ, Orlando FA. Risk of New Hospitalization Post-COVID-19 Infection for Non-COVID-19 Conditions. J Am Board Fam Med. 2021 Sep-Oct;34(5):907-913. doi: 10.3122/jabfm.2021.05.210170. PMID: 34535516.
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What Are the Characteristics of Fourth-Year Medical Students With Higher Levels of Resilience?.

PRiMER (Leawood, Kan.)

Park S, Porter M, Park K, Bielick L, Rooks BJ, Mainous AG, Datta S, Carek PJ.
PMID: 32537593
PRiMER. 2019 Oct 04;3:22. doi: 10.22454/PRiMER.2019.150381. eCollection 2019.

INTRODUCTION: Burnout during medical training, including medical school, has gained attention in recent years. Resiliency may be an important characteristic for medical students to have or obtain. The aim of this study was to examine the level of resiliency...

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Park S, Porter M, Park K, et al. What Are the Characteristics of Fourth-Year Medical Students With Higher Levels of Resilience?. PRiMER. 2019;3:22doi: 10.22454/PRiMER.2019.150381.
Park, S., Porter, M., Park, K., Bielick, L., Rooks, B. J., Mainous, A. G., Datta, S., & Carek, P. J. (2019). What Are the Characteristics of Fourth-Year Medical Students With Higher Levels of Resilience?. PRiMER (Leawood, Kan.), 322. https://doi.org/10.22454/PRiMER.2019.150381
Park, Sey, et al. "What Are the Characteristics of Fourth-Year Medical Students With Higher Levels of Resilience?." PRiMER (Leawood, Kan.) vol. 3 (2019): 22. doi: https://doi.org/10.22454/PRiMER.2019.150381
Park S, Porter M, Park K, Bielick L, Rooks BJ, Mainous AG, Datta S, Carek PJ. What Are the Characteristics of Fourth-Year Medical Students With Higher Levels of Resilience?. PRiMER. 2019 Oct 04;3:22. doi: 10.22454/PRiMER.2019.150381. eCollection 2019. PMID: 32537593; PMCID: PMC7205096.
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Reply.

American journal of ophthalmology

Fox AR, Gordon LK, Heckenlively JR, Davis JL, Goldstein DA, Lowder CY, Nussenblatt RB, Butler NJ, Dalal M, Jayasundera T, Smith WM, Lee RW, Adamus G, Chan CC, Hooks JJ, Morgans CW, Detrick B, Sen HN.
PMID: 27566926
Am J Ophthalmol. 2016 Oct;170:242-243. doi: 10.1016/j.ajo.2016.07.008. Epub 2016 Aug 25.

No abstract available.

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Fox AR, Gordon LK, Heckenlively JR, et al. Reply. Am J Ophthalmol. 2016;170:242-243doi: 10.1016/j.ajo.2016.07.008.
Fox, A. R., Gordon, L. K., Heckenlively, J. R., Davis, J. L., Goldstein, D. A., Lowder, C. Y., Nussenblatt, R. B., Butler, N. J., Dalal, M., Jayasundera, T., Smith, W. M., Lee, R. W., Adamus, G., Chan, C. C., Hooks, J. J., Morgans, C. W., Detrick, B., & Sen, H. N. (2016). Reply. American journal of ophthalmology, 170242-243. https://doi.org/10.1016/j.ajo.2016.07.008
Fox, Austin R, et al. "Reply." American journal of ophthalmology vol. 170 (2016): 242-243. doi: https://doi.org/10.1016/j.ajo.2016.07.008
Fox AR, Gordon LK, Heckenlively JR, Davis JL, Goldstein DA, Lowder CY, Nussenblatt RB, Butler NJ, Dalal M, Jayasundera T, Smith WM, Lee RW, Adamus G, Chan CC, Hooks JJ, Morgans CW, Detrick B, Sen HN. Reply. Am J Ophthalmol. 2016 Oct;170:242-243. doi: 10.1016/j.ajo.2016.07.008. Epub 2016 Aug 25. PMID: 27566926.
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The World Health Organization, Corporate Power, and the Prevention and Management of Conflicts of Interest in Nutrition Policy Comment on "Towards Preventing and Managing Conflict of Interest in Nutrition Policy? An Analysis of Submissions to a Consultation on a Draft WHO Tool".

International journal of health policy and management

Fooks GJ, Godziewski C.
PMID: 32861232
Int J Health Policy Manag. 2020 Aug 22; doi: 10.34172/ijhpm.2020.156. Epub 2020 Aug 22.

The World Health Organization's (WHO's) draft Decision-Making Process and Tool to assist governments in preventing and managing conflicts of interest in nutrition policy marks a step-change in WHO thinking on large corporations and nutrition policy. If followed closely it...

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Fooks GJ, Godziewski C. The World Health Organization, Corporate Power, and the Prevention and Management of Conflicts of Interest in Nutrition Policy Comment on "Towards Preventing and Managing Conflict of Interest in Nutrition Policy? An Analysis of Submissions to a Consultation on a Draft WHO Tool". Int J Health Policy Manag. 2020;doi: 10.34172/ijhpm.2020.156.
Fooks, G. J., & Godziewski, C. (2020). The World Health Organization, Corporate Power, and the Prevention and Management of Conflicts of Interest in Nutrition Policy Comment on "Towards Preventing and Managing Conflict of Interest in Nutrition Policy? An Analysis of Submissions to a Consultation on a Draft WHO Tool". International journal of health policy and management, . https://doi.org/10.34172/ijhpm.2020.156
Fooks, Gary Jonas, and Godziewski, Charlotte. "The World Health Organization, Corporate Power, and the Prevention and Management of Conflicts of Interest in Nutrition Policy Comment on "Towards Preventing and Managing Conflict of Interest in Nutrition Policy? An Analysis of Submissions to a Consultation on a Draft WHO Tool"." International journal of health policy and management vol. (2020). doi: https://doi.org/10.34172/ijhpm.2020.156
Fooks GJ, Godziewski C. The World Health Organization, Corporate Power, and the Prevention and Management of Conflicts of Interest in Nutrition Policy Comment on "Towards Preventing and Managing Conflict of Interest in Nutrition Policy? An Analysis of Submissions to a Consultation on a Draft WHO Tool". Int J Health Policy Manag. 2020 Aug 22; doi: 10.34172/ijhpm.2020.156. Epub 2020 Aug 22. PMID: 32861232.
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Erratum to "Does Metformin Increase Paraoxonase Activity in Patients with the Metabolic Syndrome? Additional Data from the MEFISTO Study".

Clinical and translational science

Meaney E, Sierra-Vargas P, Meaney A, Guzmán-Grenfell M, Ramírez-Sánchez I, Hicks JJ, Olivares-Corichi I, Ceballos G.
PMID: 31283806
Clin Transl Sci. 2015 Dec;8(6):873. doi: 10.1111/j.1752-8062.2011.00391.x. Epub 2016 Mar 02.

[This corrects the article DOI: 10.1111/j.1752-8062.2012.00391.x.].

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Meaney E, Sierra-Vargas P, Meaney A, et al. Erratum to "Does Metformin Increase Paraoxonase Activity in Patients with the Metabolic Syndrome? Additional Data from the MEFISTO Study". Clin Transl Sci. 2016;8(6):873doi: 10.1111/j.1752-8062.2011.00391.x.
Meaney, E., Sierra-Vargas, P., Meaney, A., Guzmán-Grenfell, M., Ramírez-Sánchez, I., Hicks, J. J., Olivares-Corichi, I., & Ceballos, G. (2015). Erratum to "Does Metformin Increase Paraoxonase Activity in Patients with the Metabolic Syndrome? Additional Data from the MEFISTO Study". Clinical and translational science, 8(6), 873. https://doi.org/10.1111/j.1752-8062.2011.00391.x
Meaney, Eduardo, et al. "Erratum to "Does Metformin Increase Paraoxonase Activity in Patients with the Metabolic Syndrome? Additional Data from the MEFISTO Study"." Clinical and translational science vol. 8,6 (2015): 873. doi: https://doi.org/10.1111/j.1752-8062.2011.00391.x
Meaney E, Sierra-Vargas P, Meaney A, Guzmán-Grenfell M, Ramírez-Sánchez I, Hicks JJ, Olivares-Corichi I, Ceballos G. Erratum to "Does Metformin Increase Paraoxonase Activity in Patients with the Metabolic Syndrome? Additional Data from the MEFISTO Study". Clin Transl Sci. 2015 Dec;8(6):873. doi: 10.1111/j.1752-8062.2011.00391.x. Epub 2016 Mar 02. PMID: 31283806; PMCID: PMC5351145.
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Single Cell Analysis of Human Tissues and Solid Tumors with Mass Cytometry.

Cytometry. Part B, Clinical cytometry

Leelatian N, Doxie DB, Greenplate AR, Mobley BC, Lehman JM, Sinnaeve J, Kauffman RM, Werkhaven JA, Mistry AM, Weaver KD, Thompson RC, Massion PP, Hooks MA, Kelley MC, Chambless LB, Ihrie RA, Irish JM.
PMID: 28719730
Cytometry B Clin Cytom. 2017 Jul 18; doi: 10.1002/cyto.b.21542. Epub 2017 Jul 18.

No abstract available.

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Leelatian N, Doxie DB, Greenplate AR, et al. Single Cell Analysis of Human Tissues and Solid Tumors with Mass Cytometry. Cytometry B Clin Cytom. 2017;doi: 10.1002/cyto.b.21542.
Leelatian, N., Doxie, D. B., Greenplate, A. R., Mobley, B. C., Lehman, J. M., Sinnaeve, J., Kauffman, R. M., Werkhaven, J. A., Mistry, A. M., Weaver, K. D., Thompson, R. C., Massion, P. P., Hooks, M. A., Kelley, M. C., Chambless, L. B., Ihrie, R. A., & Irish, J. M. (2017). Single Cell Analysis of Human Tissues and Solid Tumors with Mass Cytometry. Cytometry. Part B, Clinical cytometry, . https://doi.org/10.1002/cyto.b.21542
Leelatian, Nalin, et al. "Single Cell Analysis of Human Tissues and Solid Tumors with Mass Cytometry." Cytometry. Part B, Clinical cytometry vol. (2017). doi: https://doi.org/10.1002/cyto.b.21542
Leelatian N, Doxie DB, Greenplate AR, Mobley BC, Lehman JM, Sinnaeve J, Kauffman RM, Werkhaven JA, Mistry AM, Weaver KD, Thompson RC, Massion PP, Hooks MA, Kelley MC, Chambless LB, Ihrie RA, Irish JM. Single Cell Analysis of Human Tissues and Solid Tumors with Mass Cytometry. Cytometry B Clin Cytom. 2017 Jul 18; doi: 10.1002/cyto.b.21542. Epub 2017 Jul 18. PMID: 28719730.
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Urinary Clearance of Cranberry Flavonol Glycosides in Humans.

Journal of agricultural and food chemistry

Wang Y, Singh AP, Nelson HN, Kaiser AJ, Reker NC, Hooks TL, Wilson T, Vorsa N.
PMID: 27690414
J Agric Food Chem. 2016 Oct 26;64(42):7931-7939. doi: 10.1021/acs.jafc.6b03611. Epub 2016 Oct 18.

Cranberry is reported to have health benefits, including prevention of urinary tract infections and other chronic diseases, due to the high content of polyphenols, including flavonols and flavan-3-ols. The aim of this study was to determine the clearance of...

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Wang Y, Singh AP, Nelson HN, et al. Urinary Clearance of Cranberry Flavonol Glycosides in Humans. J Agric Food Chem. 2016;64(42):7931-7939doi: 10.1021/acs.jafc.6b03611.
Wang, Y., Singh, A. P., Nelson, H. N., Kaiser, A. J., Reker, N. C., Hooks, T. L., Wilson, T., & Vorsa, N. (2016). Urinary Clearance of Cranberry Flavonol Glycosides in Humans. Journal of agricultural and food chemistry, 64(42), 7931-7939. https://doi.org/10.1021/acs.jafc.6b03611
Wang, Yifei, et al. "Urinary Clearance of Cranberry Flavonol Glycosides in Humans." Journal of agricultural and food chemistry vol. 64,42 (2016): 7931-7939. doi: https://doi.org/10.1021/acs.jafc.6b03611
Wang Y, Singh AP, Nelson HN, Kaiser AJ, Reker NC, Hooks TL, Wilson T, Vorsa N. Urinary Clearance of Cranberry Flavonol Glycosides in Humans. J Agric Food Chem. 2016 Oct 26;64(42):7931-7939. doi: 10.1021/acs.jafc.6b03611. Epub 2016 Oct 18. PMID: 27690414.
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Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression .

Oncotarget

Indersie E, Hooks KB, Capdevielle C, Fabre M, Dugot-Senant N, Desplat A, Lepreux S, Merched A, Grosset CF, Hagedorn M.
PMID: 29662633
Oncotarget. 2018 Mar 01;9(22):16149-16162. doi: 10.18632/oncotarget.24598. eCollection 2018 Mar 23.

Hepatoblastoma (HBL) is a pediatric liver cancer with defined molecular alterations driving its progression. Here, we describe an animal model for HBL on the chick chorioallantoic membrane (CAM), which recapitulates relevant features of HBL in patients. Expression of classic...

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Indersie E, Hooks KB, Capdevielle C, et al. Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression . Oncotarget. 2018;9(22):16149-16162doi: 10.18632/oncotarget.24598.
Indersie, E., Hooks, K. B., Capdevielle, C., Fabre, M., Dugot-Senant, N., Desplat, A., Lepreux, S., Merched, A., Grosset, C. F., & Hagedorn, M. (2018). Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression . Oncotarget, 9(22), 16149-16162. https://doi.org/10.18632/oncotarget.24598
Indersie, Emilie, et al. "Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression ." Oncotarget vol. 9,22 (2018): 16149-16162. doi: https://doi.org/10.18632/oncotarget.24598
Indersie E, Hooks KB, Capdevielle C, Fabre M, Dugot-Senant N, Desplat A, Lepreux S, Merched A, Grosset CF, Hagedorn M. Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression . Oncotarget. 2018 Mar 01;9(22):16149-16162. doi: 10.18632/oncotarget.24598. eCollection 2018 Mar 23. PMID: 29662633; PMCID: PMC5882324.
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Impact system for ultrafast synchrotron experiments.

The Review of scientific instruments

Jensen BJ, Owens CT, Ramos KJ, Yeager JD, Saavedra RA, Iverson AJ, Luo SN, Fezzaa K, Hooks DE.
PMID: 23387665
Rev Sci Instrum. 2013 Jan;84(1):013904. doi: 10.1063/1.4774389.

The impact system for ultrafast synchrotron experiments, or IMPULSE, is a 12.6-mm bore light-gas gun (

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Jensen BJ, Owens CT, Ramos KJ, et al. Impact system for ultrafast synchrotron experiments. Rev Sci Instrum. 2013;84(1):013904doi: 10.1063/1.4774389.
Jensen, B. J., Owens, C. T., Ramos, K. J., Yeager, J. D., Saavedra, R. A., Iverson, A. J., Luo, S. N., Fezzaa, K., & Hooks, D. E. (2013). Impact system for ultrafast synchrotron experiments. The Review of scientific instruments, 84(1), 013904. https://doi.org/10.1063/1.4774389
Jensen, B J, et al. "Impact system for ultrafast synchrotron experiments." The Review of scientific instruments vol. 84,1 (2013): 013904. doi: https://doi.org/10.1063/1.4774389
Jensen BJ, Owens CT, Ramos KJ, Yeager JD, Saavedra RA, Iverson AJ, Luo SN, Fezzaa K, Hooks DE. Impact system for ultrafast synchrotron experiments. Rev Sci Instrum. 2013 Jan;84(1):013904. doi: 10.1063/1.4774389. PMID: 23387665.
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Airborne particulate matter PM2.5 from Mexico City affects the generation of reactive oxygen species by blood neutrophils from asthmatics: an in vitro approach.

Journal of occupational medicine and toxicology (London, England)

Sierra-Vargas MP, Guzman-Grenfell AM, Blanco-Jimenez S, Sepulveda-Sanchez JD, Bernabe-Cabanillas RM, Cardenas-Gonzalez B, Ceballos G, Hicks JJ.
PMID: 19563660
J Occup Med Toxicol. 2009 Jun 29;4:17. doi: 10.1186/1745-6673-4-17.

BACKGROUND: The Mexico City Metropolitan Area is densely populated, and toxic air pollutants are generated and concentrated at a higher rate because of its geographic characteristics. It is well known that exposure to particulate matter, especially to fine and...

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Sierra-Vargas MP, Guzman-Grenfell AM, Blanco-Jimenez S, et al. Airborne particulate matter PM2.5 from Mexico City affects the generation of reactive oxygen species by blood neutrophils from asthmatics: an in vitro approach. J Occup Med Toxicol. 2009;4:17doi: 10.1186/1745-6673-4-17.
Sierra-Vargas, M. P., Guzman-Grenfell, A. M., Blanco-Jimenez, S., Sepulveda-Sanchez, J. D., Bernabe-Cabanillas, R. M., Cardenas-Gonzalez, B., Ceballos, G., & Hicks, J. J. (2009). Airborne particulate matter PM2.5 from Mexico City affects the generation of reactive oxygen species by blood neutrophils from asthmatics: an in vitro approach. Journal of occupational medicine and toxicology (London, England), 417. https://doi.org/10.1186/1745-6673-4-17
Sierra-Vargas, Martha Patricia, et al. "Airborne particulate matter PM2.5 from Mexico City affects the generation of reactive oxygen species by blood neutrophils from asthmatics: an in vitro approach." Journal of occupational medicine and toxicology (London, England) vol. 4 (2009): 17. doi: https://doi.org/10.1186/1745-6673-4-17
Sierra-Vargas MP, Guzman-Grenfell AM, Blanco-Jimenez S, Sepulveda-Sanchez JD, Bernabe-Cabanillas RM, Cardenas-Gonzalez B, Ceballos G, Hicks JJ. Airborne particulate matter PM2.5 from Mexico City affects the generation of reactive oxygen species by blood neutrophils from asthmatics: an in vitro approach. J Occup Med Toxicol. 2009 Jun 29;4:17. doi: 10.1186/1745-6673-4-17. PMID: 19563660; PMCID: PMC2711089.
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Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes.

Journal of nematology

Marahatta SP, Wang KH, Sipes BS, Hooks CR.
PMID: 23482862
J Nematol. 2012 Mar;44(1):26-30.

Although marigold (Tagetes patula) is known to produce allelopathic compounds toxic to plant-parasitic nematodes, suppression of Meloidogyne incognita can be inconsistent. Two greenhouse experiments were conducted to test whether marigold is more effective in suppressing Meloidogyne spp. when it...

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Marahatta SP, Wang KH, Sipes BS, et al. Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes. J Nematol. 2012;44(1):26-30
Marahatta, S. P., Wang, K. H., Sipes, B. S., & Hooks, C. R. (2012). Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes. Journal of nematology, 44(1), 26-30.
Marahatta, Sharadchandra P, et al. "Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes." Journal of nematology vol. 44,1 (2012): 26-30.
Marahatta SP, Wang KH, Sipes BS, Hooks CR. Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes. J Nematol. 2012 Mar;44(1):26-30. PMID: 23482862; PMCID: PMC3593261.
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