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Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results.

Network neuroscience (Cambridge, Mass.)

Bottenhorn KL, Flannery JS, Boeving ER, Riedel MC, Eickhoff SB, Sutherland MT, Laird AR.
PMID: 30793072
Netw Neurosci. 2018 Oct 01;3(1):27-48. doi: 10.1162/netn_a_00050. eCollection 2019.

Cognitive processes do not occur by pure insertion and instead depend on the full complement of co-occurring mental processes, including perceptual and motor functions. As such, there is limited ecological validity to human neuroimaging experiments that use highly controlled...

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Bottenhorn KL, Flannery JS, Boeving ER, et al. Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results. Netw Neurosci. 2018;3(1):27-48doi: 10.1162/netn_a_00050.
Bottenhorn, K. L., Flannery, J. S., Boeving, E. R., Riedel, M. C., Eickhoff, S. B., Sutherland, M. T., & Laird, A. R. (2019). Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results. Network neuroscience (Cambridge, Mass.), 3(1), 27-48. https://doi.org/10.1162/netn_a_00050
Bottenhorn, Katherine L, et al. "Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results." Network neuroscience (Cambridge, Mass.) vol. 3,1 (2019): 27-48. doi: https://doi.org/10.1162/netn_a_00050
Bottenhorn KL, Flannery JS, Boeving ER, Riedel MC, Eickhoff SB, Sutherland MT, Laird AR. Cooperating yet distinct brain networks engaged during naturalistic paradigms: A meta-analysis of functional MRI results. Netw Neurosci. 2018 Oct 01;3(1):27-48. doi: 10.1162/netn_a_00050. eCollection 2019. PMID: 30793072; PMCID: PMC6326731.
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RNAs as Candidate Diagnostic and Prognostic Markers of Prostate Cancer-From Cell Line Models to Liquid Biopsies.

Diagnostics (Basel, Switzerland)

Lim MCJ, Baird AM, Aird J, Greene J, Kapoor D, Gray SG, McDermott R, Finn SP.
PMID: 30200254
Diagnostics (Basel). 2018 Aug 30;8(3). doi: 10.3390/diagnostics8030060.

The treatment landscape of prostate cancer has evolved rapidly over the past five years. The explosion in treatment advances has been witnessed in parallel with significant progress in the field of molecular biomarkers. The advent of next-generation sequencing has...

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Lim MCJ, Baird AM, Aird J, et al. RNAs as Candidate Diagnostic and Prognostic Markers of Prostate Cancer-From Cell Line Models to Liquid Biopsies. Diagnostics (Basel). 2018;8(3)doi: 10.3390/diagnostics8030060.
Lim, M. C. J., Baird, A. M., Aird, J., Greene, J., Kapoor, D., Gray, S. G., McDermott, R., & Finn, S. P. (2018). RNAs as Candidate Diagnostic and Prognostic Markers of Prostate Cancer-From Cell Line Models to Liquid Biopsies. Diagnostics (Basel, Switzerland), 8(3), . https://doi.org/10.3390/diagnostics8030060
Lim, Marvin C J, et al. "RNAs as Candidate Diagnostic and Prognostic Markers of Prostate Cancer-From Cell Line Models to Liquid Biopsies." Diagnostics (Basel, Switzerland) vol. 8,3 (2018). doi: https://doi.org/10.3390/diagnostics8030060
Lim MCJ, Baird AM, Aird J, Greene J, Kapoor D, Gray SG, McDermott R, Finn SP. RNAs as Candidate Diagnostic and Prognostic Markers of Prostate Cancer-From Cell Line Models to Liquid Biopsies. Diagnostics (Basel). 2018 Aug 30;8(3). doi: 10.3390/diagnostics8030060. PMID: 30200254; PMCID: PMC6163368.
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Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus.

Molecular ecology resources

Estoup A, Baird SJ, Ray N, Currat M, Cornuet JM, Santos F, Beaumont MA, Excoffier L.
PMID: 21565099
Mol Ecol Resour. 2010 Sep;10(5):886-901. doi: 10.1111/j.1755-0998.2010.02882.x. Epub 2010 Jun 02.

We developed a spatially explicit model of a bioinvasion and used an approximate Bayesian computation (ABC) framework to make various inferences from a combination of genetic (microsatellite genotypes), historical (first observation dates) and geographical (spatial coordinates of introduction and...

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Estoup A, Baird SJ, Ray N, et al. Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Mol Ecol Resour. 2010;10(5):886-901doi: 10.1111/j.1755-0998.2010.02882.x.
Estoup, A., Baird, S. J., Ray, N., Currat, M., Cornuet, J. M., Santos, F., Beaumont, M. A., & Excoffier, L. (2010). Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Molecular ecology resources, 10(5), 886-901. https://doi.org/10.1111/j.1755-0998.2010.02882.x
Estoup, Arnaud, et al. "Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus." Molecular ecology resources vol. 10,5 (2010): 886-901. doi: https://doi.org/10.1111/j.1755-0998.2010.02882.x
Estoup A, Baird SJ, Ray N, Currat M, Cornuet JM, Santos F, Beaumont MA, Excoffier L. Combining genetic, historical and geographical data to reconstruct the dynamics of bioinvasions: application to the cane toad Bufo marinus. Mol Ecol Resour. 2010 Sep;10(5):886-901. doi: 10.1111/j.1755-0998.2010.02882.x. Epub 2010 Jun 02. PMID: 21565099.
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When RON MET TAM in Mesothelioma: All Druggable for One, and One Drug for All?.

Frontiers in endocrinology

Baird AM, Easty D, Jarzabek M, Shiels L, Soltermann A, Klebe S, Raeppel S, MacDonagh L, Wu C, Griggs K, Kirschner MB, Stanfill B, Nonaka D, Goparaju CM, Murer B, Fennell DA, O'Donnell DM, Barr MP, Mutti L, Reid G, Finn S, Cuffe S, Pass HI, Opitz I, Byrne AT, O'Byrne KJ, Gray SG.
PMID: 30863365
Front Endocrinol (Lausanne). 2019 Feb 26;10:89. doi: 10.3389/fendo.2019.00089. eCollection 2019.

Malignant pleural mesothelioma (MPM) is an aggressive inflammatory cancer with a poor survival rate. Treatment options are limited at best and drug resistance is common. Thus, there is an urgent need to identify novel therapeutic targets in this disease...

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Baird AM, Easty D, Jarzabek M, et al. When RON MET TAM in Mesothelioma: All Druggable for One, and One Drug for All?. Front Endocrinol (Lausanne). 2019;10:89doi: 10.3389/fendo.2019.00089.
Baird, A. M., Easty, D., Jarzabek, M., Shiels, L., Soltermann, A., Klebe, S., Raeppel, S., MacDonagh, L., Wu, C., Griggs, K., Kirschner, M. B., Stanfill, B., Nonaka, D., Goparaju, C. M., Murer, B., Fennell, D. A., O'Donnell, D. M., Barr, M. P., Mutti, L., Reid, G., Finn, S., Cuffe, S., Pass, H. I., Opitz, I., Byrne, A. T., O'Byrne, K. J., & Gray, S. G. (2019). When RON MET TAM in Mesothelioma: All Druggable for One, and One Drug for All?. Frontiers in endocrinology, 1089. https://doi.org/10.3389/fendo.2019.00089
Baird, Anne-Marie, et al. "When RON MET TAM in Mesothelioma: All Druggable for One, and One Drug for All?." Frontiers in endocrinology vol. 10 (2019): 89. doi: https://doi.org/10.3389/fendo.2019.00089
Baird AM, Easty D, Jarzabek M, Shiels L, Soltermann A, Klebe S, Raeppel S, MacDonagh L, Wu C, Griggs K, Kirschner MB, Stanfill B, Nonaka D, Goparaju CM, Murer B, Fennell DA, O'Donnell DM, Barr MP, Mutti L, Reid G, Finn S, Cuffe S, Pass HI, Opitz I, Byrne AT, O'Byrne KJ, Gray SG. When RON MET TAM in Mesothelioma: All Druggable for One, and One Drug for All?. Front Endocrinol (Lausanne). 2019 Feb 26;10:89. doi: 10.3389/fendo.2019.00089. eCollection 2019. PMID: 30863365; PMCID: PMC6399142.
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EnRoot: a narrow-diameter, inexpensive and partially 3D-printable minirhizotron for imaging fine root production.

Plant methods

Arnaud M, Baird AJ, Morris PJ, Harris A, Huck JJ.
PMID: 31467587
Plant Methods. 2019 Aug 28;15:101. doi: 10.1186/s13007-019-0489-6. eCollection 2019.

BACKGROUND: Fine root production is one of the least well understood components of the carbon cycle in terrestrial ecosystems. Minirhizotrons allow accurate and non-destructive sampling of fine root production. Small and large scale studies across a range of ecosystems...

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Arnaud M, Baird AJ, Morris PJ, et al. EnRoot: a narrow-diameter, inexpensive and partially 3D-printable minirhizotron for imaging fine root production. Plant Methods. 2019;15:101doi: 10.1186/s13007-019-0489-6.
Arnaud, M., Baird, A. J., Morris, P. J., Harris, A., & Huck, J. J. (2019). EnRoot: a narrow-diameter, inexpensive and partially 3D-printable minirhizotron for imaging fine root production. Plant methods, 15101. https://doi.org/10.1186/s13007-019-0489-6
Arnaud, Marie, et al. "EnRoot: a narrow-diameter, inexpensive and partially 3D-printable minirhizotron for imaging fine root production." Plant methods vol. 15 (2019): 101. doi: https://doi.org/10.1186/s13007-019-0489-6
Arnaud M, Baird AJ, Morris PJ, Harris A, Huck JJ. EnRoot: a narrow-diameter, inexpensive and partially 3D-printable minirhizotron for imaging fine root production. Plant Methods. 2019 Aug 28;15:101. doi: 10.1186/s13007-019-0489-6. eCollection 2019. PMID: 31467587; PMCID: PMC6712814.
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Functional Characterization of Atrophy Patterns Related to Cognitive Impairment.

Frontiers in neurology

Schnellbächer GJ, Hoffstaedter F, Eickhoff SB, Caspers S, Nickl-Jockschat T, Fox PT, Laird AR, Schulz JB, Reetz K, Dogan I.
PMID: 32038473
Front Neurol. 2020 Jan 24;11:18. doi: 10.3389/fneur.2020.00018. eCollection 2020.

No abstract available.

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Schnellbächer GJ, Hoffstaedter F, Eickhoff SB, et al. Functional Characterization of Atrophy Patterns Related to Cognitive Impairment. Front Neurol. 2020;11:18doi: 10.3389/fneur.2020.00018.
Schnellbächer, G. J., Hoffstaedter, F., Eickhoff, S. B., Caspers, S., Nickl-Jockschat, T., Fox, P. T., Laird, A. R., Schulz, J. B., Reetz, K., & Dogan, I. (2020). Functional Characterization of Atrophy Patterns Related to Cognitive Impairment. Frontiers in neurology, 1118. https://doi.org/10.3389/fneur.2020.00018
Schnellbächer, Gereon J, et al. "Functional Characterization of Atrophy Patterns Related to Cognitive Impairment." Frontiers in neurology vol. 11 (2020): 18. doi: https://doi.org/10.3389/fneur.2020.00018
Schnellbächer GJ, Hoffstaedter F, Eickhoff SB, Caspers S, Nickl-Jockschat T, Fox PT, Laird AR, Schulz JB, Reetz K, Dogan I. Functional Characterization of Atrophy Patterns Related to Cognitive Impairment. Front Neurol. 2020 Jan 24;11:18. doi: 10.3389/fneur.2020.00018. eCollection 2020. PMID: 32038473; PMCID: PMC6993791.
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Biomarkers, menopausal hormone therapy and risk of venous thrombosis: The Women's Health Initiative.

Research and practice in thrombosis and haemostasis

Cushman M, Larson JC, Rosendaal FR, Heckbert SR, Curb JD, Phillips LS, Baird AE, Eaton CB, Stafford RS.
PMID: 30046733
Res Pract Thromb Haemost. 2018 Apr 17;2(2):310-319. doi: 10.1002/rth2.12100. eCollection 2018 Apr.

BACKGROUND: Oral menopausal hormone therapy causes venous thrombosis but whether biomarkers of thrombosis risk can identify women at risk is unknown.METHODS: We completed a nested case control study in the two Women's Health Initiative hormone trials; 27 347 women...

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Cushman M, Larson JC, Rosendaal FR, et al. Biomarkers, menopausal hormone therapy and risk of venous thrombosis: The Women's Health Initiative. Res Pract Thromb Haemost. 2018;2(2):310-319doi: 10.1002/rth2.12100.
Cushman, M., Larson, J. C., Rosendaal, F. R., Heckbert, S. R., Curb, J. D., Phillips, L. S., Baird, A. E., Eaton, C. B., & Stafford, R. S. (2018). Biomarkers, menopausal hormone therapy and risk of venous thrombosis: The Women's Health Initiative. Research and practice in thrombosis and haemostasis, 2(2), 310-319. https://doi.org/10.1002/rth2.12100
Cushman, Mary, et al. "Biomarkers, menopausal hormone therapy and risk of venous thrombosis: The Women's Health Initiative." Research and practice in thrombosis and haemostasis vol. 2,2 (2018): 310-319. doi: https://doi.org/10.1002/rth2.12100
Cushman M, Larson JC, Rosendaal FR, Heckbert SR, Curb JD, Phillips LS, Baird AE, Eaton CB, Stafford RS. Biomarkers, menopausal hormone therapy and risk of venous thrombosis: The Women's Health Initiative. Res Pract Thromb Haemost. 2018 Apr 17;2(2):310-319. doi: 10.1002/rth2.12100. eCollection 2018 Apr. PMID: 30046733; PMCID: PMC5974918.
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The Adductomics of Isolevuglandins: Oxidation of IsoLG Pyrrole Intermediates Generates Pyrrole⁻Pyrrole Crosslinks and Lactams.

High-throughput

Bi W, Jang GF, Zhang L, Crabb JW, Laird J, Linetsky M, Salomon RG.
PMID: 31083423
High Throughput. 2019 May 10;8(2). doi: 10.3390/ht8020012.

Isoprostane endoperoxides generated by free radical-induced oxidation of arachidonates, and prostaglandin endoperoxides generated through enzymatic cyclooxygenation of arachidonate, rearrange nonenzymatically to isoprostanes and a family of stereo and structurally isomeric γ-ketoaldehyde seco-isoprostanes, collectively known as isolevuglandins (isoLGs). IsoLGs are...

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Bi W, Jang GF, Zhang L, et al. The Adductomics of Isolevuglandins: Oxidation of IsoLG Pyrrole Intermediates Generates Pyrrole⁻Pyrrole Crosslinks and Lactams. High Throughput. 2019;8(2)doi: 10.3390/ht8020012.
Bi, W., Jang, G. F., Zhang, L., Crabb, J. W., Laird, J., Linetsky, M., & Salomon, R. G. (2019). The Adductomics of Isolevuglandins: Oxidation of IsoLG Pyrrole Intermediates Generates Pyrrole⁻Pyrrole Crosslinks and Lactams. High-throughput, 8(2), . https://doi.org/10.3390/ht8020012
Bi, Wenzhao, et al. "The Adductomics of Isolevuglandins: Oxidation of IsoLG Pyrrole Intermediates Generates Pyrrole⁻Pyrrole Crosslinks and Lactams." High-throughput vol. 8,2 (2019). doi: https://doi.org/10.3390/ht8020012
Bi W, Jang GF, Zhang L, Crabb JW, Laird J, Linetsky M, Salomon RG. The Adductomics of Isolevuglandins: Oxidation of IsoLG Pyrrole Intermediates Generates Pyrrole⁻Pyrrole Crosslinks and Lactams. High Throughput. 2019 May 10;8(2). doi: 10.3390/ht8020012. PMID: 31083423; PMCID: PMC6630840.
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Safety and Outcomes of Linezolid Use for Nocardiosis.

Open forum infectious diseases

Davidson N, Grigg MJ, Mcguinness SL, Baird RJ, Anstey NM.
PMID: 32258209
Open Forum Infect Dis. 2020 Mar 16;7(4):ofaa090. doi: 10.1093/ofid/ofaa090. eCollection 2020 Apr.

BACKGROUND: Tropical Australia has a high incidence of nocardiosis, with high rates of intrinsic antimicrobial resistance. Linezolid, the only antimicrobial to which all local METHODS: We identified cases through a retrospective review of all RDH RESULTS: Between 2014 and...

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Davidson N, Grigg MJ, Mcguinness SL, et al. Safety and Outcomes of Linezolid Use for Nocardiosis. Open Forum Infect Dis. 2020;7(4):ofaa090doi: 10.1093/ofid/ofaa090.
Davidson, N., Grigg, M. J., Mcguinness, S. L., Baird, R. J., & Anstey, N. M. (2020). Safety and Outcomes of Linezolid Use for Nocardiosis. Open forum infectious diseases, 7(4), ofaa090. https://doi.org/10.1093/ofid/ofaa090
Davidson, Natalie, et al. "Safety and Outcomes of Linezolid Use for Nocardiosis." Open forum infectious diseases vol. 7,4 (2020): ofaa090. doi: https://doi.org/10.1093/ofid/ofaa090
Davidson N, Grigg MJ, Mcguinness SL, Baird RJ, Anstey NM. Safety and Outcomes of Linezolid Use for Nocardiosis. Open Forum Infect Dis. 2020 Mar 16;7(4):ofaa090. doi: 10.1093/ofid/ofaa090. eCollection 2020 Apr. PMID: 32258209; PMCID: PMC7112726.
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Diversity detected in commensals at host and farm level reveals implications for national antimicrobial resistance surveillance programmes.

The Journal of antimicrobial chemotherapy

Laird TJ, Jordan D, Lee ZZ, O'Dea M, Stegger M, Truswell A, Sahibzada S, Abraham R, Abraham S.
PMID: 34791273
J Antimicrob Chemother. 2021 Nov 13; doi: 10.1093/jac/dkab403. Epub 2021 Nov 13.

BACKGROUND: A key component to control of antimicrobial resistance (AMR) is the surveillance of food animals. Currently, national programmes test only limited isolates per animal species per year, an approach tacitly assuming that heterogeneity of AMR across animal populations...

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Laird TJ, Jordan D, Lee ZZ, et al. Diversity detected in commensals at host and farm level reveals implications for national antimicrobial resistance surveillance programmes. J Antimicrob Chemother. 2021;doi: 10.1093/jac/dkab403.
Laird, T. J., Jordan, D., Lee, Z. Z., O'Dea, M., Stegger, M., Truswell, A., Sahibzada, S., Abraham, R., & Abraham, S. (2021). Diversity detected in commensals at host and farm level reveals implications for national antimicrobial resistance surveillance programmes. The Journal of antimicrobial chemotherapy, . https://doi.org/10.1093/jac/dkab403
Laird, Tanya J, et al. "Diversity detected in commensals at host and farm level reveals implications for national antimicrobial resistance surveillance programmes." The Journal of antimicrobial chemotherapy vol. (2021). doi: https://doi.org/10.1093/jac/dkab403
Laird TJ, Jordan D, Lee ZZ, O'Dea M, Stegger M, Truswell A, Sahibzada S, Abraham R, Abraham S. Diversity detected in commensals at host and farm level reveals implications for national antimicrobial resistance surveillance programmes. J Antimicrob Chemother. 2021 Nov 13; doi: 10.1093/jac/dkab403. Epub 2021 Nov 13. PMID: 34791273.
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A Novel Calpain Inhibitor Compound Has Protective Effects on a Zebrafish Model of Spinocerebellar Ataxia Type 3.

Cells

Robinson KJ, Yuan K, Plenderleith SK, Watchon M, Laird AS.
PMID: 34685571
Cells. 2021 Sep 29;10(10). doi: 10.3390/cells10102592.

Spinocerebellar ataxia type 3 (SCA3) is a hereditary ataxia caused by inheritance of a mutated form of the human

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Robinson KJ, Yuan K, Plenderleith SK, et al. A Novel Calpain Inhibitor Compound Has Protective Effects on a Zebrafish Model of Spinocerebellar Ataxia Type 3. Cells. 2021;10(10)doi: 10.3390/cells10102592.
Robinson, K. J., Yuan, K., Plenderleith, S. K., Watchon, M., & Laird, A. S. (2021). A Novel Calpain Inhibitor Compound Has Protective Effects on a Zebrafish Model of Spinocerebellar Ataxia Type 3. Cells, 10(10), . https://doi.org/10.3390/cells10102592
Robinson, Katherine J, et al. "A Novel Calpain Inhibitor Compound Has Protective Effects on a Zebrafish Model of Spinocerebellar Ataxia Type 3." Cells vol. 10,10 (2021). doi: https://doi.org/10.3390/cells10102592
Robinson KJ, Yuan K, Plenderleith SK, Watchon M, Laird AS. A Novel Calpain Inhibitor Compound Has Protective Effects on a Zebrafish Model of Spinocerebellar Ataxia Type 3. Cells. 2021 Sep 29;10(10). doi: 10.3390/cells10102592. PMID: 34685571; PMCID: PMC8533844.
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Computed tomography-defined low skeletal muscle index and density in cancer patients: observations from a systematic review.

Journal of cachexia, sarcopenia and muscle

McGovern J, Dolan RD, Horgan PG, Laird BJ, McMillan DC.
PMID: 34664431
J Cachexia Sarcopenia Muscle. 2021 Oct 18; doi: 10.1002/jcsm.12831. Epub 2021 Oct 18.

BACKGROUND: Computed tomography (CT) analysis of body composition has garnered interest as a potential prognostic tool in those with cancer. A range of pre-defined thresholds currently exist within the literature to define low skeletal muscle mass and density. The...

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McGovern J, Dolan RD, Horgan PG, et al. Computed tomography-defined low skeletal muscle index and density in cancer patients: observations from a systematic review. J Cachexia Sarcopenia Muscle. 2021;doi: 10.1002/jcsm.12831.
McGovern, J., Dolan, R. D., Horgan, P. G., Laird, B. J., & McMillan, D. C. (2021). Computed tomography-defined low skeletal muscle index and density in cancer patients: observations from a systematic review. Journal of cachexia, sarcopenia and muscle, . https://doi.org/10.1002/jcsm.12831
McGovern, Josh, et al. "Computed tomography-defined low skeletal muscle index and density in cancer patients: observations from a systematic review." Journal of cachexia, sarcopenia and muscle vol. (2021). doi: https://doi.org/10.1002/jcsm.12831
McGovern J, Dolan RD, Horgan PG, Laird BJ, McMillan DC. Computed tomography-defined low skeletal muscle index and density in cancer patients: observations from a systematic review. J Cachexia Sarcopenia Muscle. 2021 Oct 18; doi: 10.1002/jcsm.12831. Epub 2021 Oct 18. PMID: 34664431.
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