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A Whole Brain Staining, Embedding, and Clearing Pipeline for Adult Zebrafish to Visualize Cell Proliferation and Morphology in 3-Dimensions.

Frontiers in neuroscience

Lindsey BW, Douek AM, Loosli F, Kaslin J.
PMID: 29386991
Front Neurosci. 2018 Jan 17;11:750. doi: 10.3389/fnins.2017.00750. eCollection 2017.

The field of macro-imaging has grown considerably with the appearance of innovative clearing methods and confocal microscopes with lasers capable of penetrating increasing tissue depths. The ability to visualize and model the growth of whole organs as they develop...

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Lindsey BW, Douek AM, Loosli F, et al. A Whole Brain Staining, Embedding, and Clearing Pipeline for Adult Zebrafish to Visualize Cell Proliferation and Morphology in 3-Dimensions. Front Neurosci. 2018;11:750doi: 10.3389/fnins.2017.00750.
Lindsey, B. W., Douek, A. M., Loosli, F., & Kaslin, J. (2017). A Whole Brain Staining, Embedding, and Clearing Pipeline for Adult Zebrafish to Visualize Cell Proliferation and Morphology in 3-Dimensions. Frontiers in neuroscience, 11750. https://doi.org/10.3389/fnins.2017.00750
Lindsey, Benjamin W, et al. "A Whole Brain Staining, Embedding, and Clearing Pipeline for Adult Zebrafish to Visualize Cell Proliferation and Morphology in 3-Dimensions." Frontiers in neuroscience vol. 11 (2017): 750. doi: https://doi.org/10.3389/fnins.2017.00750
Lindsey BW, Douek AM, Loosli F, Kaslin J. A Whole Brain Staining, Embedding, and Clearing Pipeline for Adult Zebrafish to Visualize Cell Proliferation and Morphology in 3-Dimensions. Front Neurosci. 2018 Jan 17;11:750. doi: 10.3389/fnins.2017.00750. eCollection 2017. PMID: 29386991; PMCID: PMC5776138.
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Correction: Distinct roles of neuroepithelial-like and radial glia-like progenitor cells in cerebellar regeneration.

Development (Cambridge, England)

Kaslin J, Kroehne V, Ganz J, Hans S, Brand M.
PMID: 28928285
Development. 2017 Sep 15;144(18):3388. doi: 10.1242/dev.158600.

No abstract available.

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Kaslin J, Kroehne V, Ganz J, et al. Correction: Distinct roles of neuroepithelial-like and radial glia-like progenitor cells in cerebellar regeneration. Development. 2017;144(18):3388doi: 10.1242/dev.158600.
Kaslin, J., Kroehne, V., Ganz, J., Hans, S., & Brand, M. (2017). Correction: Distinct roles of neuroepithelial-like and radial glia-like progenitor cells in cerebellar regeneration. Development (Cambridge, England), 144(18), 3388. https://doi.org/10.1242/dev.158600
Kaslin, Jan, et al. "Correction: Distinct roles of neuroepithelial-like and radial glia-like progenitor cells in cerebellar regeneration." Development (Cambridge, England) vol. 144,18 (2017): 3388. doi: https://doi.org/10.1242/dev.158600
Kaslin J, Kroehne V, Ganz J, Hans S, Brand M. Correction: Distinct roles of neuroepithelial-like and radial glia-like progenitor cells in cerebellar regeneration. Development. 2017 Sep 15;144(18):3388. doi: 10.1242/dev.158600. PMID: 28928285.
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Three-dimensional printed millifluidic devices for zebrafish embryo tests.

Biomicrofluidics

Zhu F, Skommer J, Macdonald NP, Friedrich T, Kaslin J, Wlodkowic D.
PMID: 26339325
Biomicrofluidics. 2015 Jul 22;9(4):046502. doi: 10.1063/1.4927379. eCollection 2015 Jul.

Implementations of Lab-on-a-Chip technologies for in-situ analysis of small model organisms and embryos (both invertebrate and vertebrate) are attracting an increasing interest. A significant hurdle to widespread applications of microfluidic and millifluidic devices for in-situ analysis of small model...

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Zhu F, Skommer J, Macdonald NP, et al. Three-dimensional printed millifluidic devices for zebrafish embryo tests. Biomicrofluidics. 2015;9(4):046502doi: 10.1063/1.4927379.
Zhu, F., Skommer, J., Macdonald, N. P., Friedrich, T., Kaslin, J., & Wlodkowic, D. (2015). Three-dimensional printed millifluidic devices for zebrafish embryo tests. Biomicrofluidics, 9(4), 046502. https://doi.org/10.1063/1.4927379
Zhu, Feng, et al. "Three-dimensional printed millifluidic devices for zebrafish embryo tests." Biomicrofluidics vol. 9,4 (2015): 046502. doi: https://doi.org/10.1063/1.4927379
Zhu F, Skommer J, Macdonald NP, Friedrich T, Kaslin J, Wlodkowic D. Three-dimensional printed millifluidic devices for zebrafish embryo tests. Biomicrofluidics. 2015 Jul 22;9(4):046502. doi: 10.1063/1.4927379. eCollection 2015 Jul. PMID: 26339325; PMCID: PMC4514717.
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Nutritional adequacy of a cows' milk exclusion diet in infancy.

Clinical and translational allergy

Maslin K, Oliver EM, Scally KS, Atkinson J, Foote K, Venter C, Roberts G, Grimshaw KE.
PMID: 27257475
Clin Transl Allergy. 2016 Jun 02;6:20. doi: 10.1186/s13601-016-0109-8. eCollection 2016.

BACKGROUND: Infants with suspected cows' milk allergy are required to follow a strict milk exclusion diet which may lead to nutritional deficiencies, especially if not supervised by a healthcare professional. The aim of this study was to assess the...

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Maslin K, Oliver EM, Scally KS, et al. Nutritional adequacy of a cows' milk exclusion diet in infancy. Clin Transl Allergy. 2016;6:20doi: 10.1186/s13601-016-0109-8.
Maslin, K., Oliver, E. M., Scally, K. S., Atkinson, J., Foote, K., Venter, C., Roberts, G., & Grimshaw, K. E. (2016). Nutritional adequacy of a cows' milk exclusion diet in infancy. Clinical and translational allergy, 620. https://doi.org/10.1186/s13601-016-0109-8
Maslin, Kate, et al. "Nutritional adequacy of a cows' milk exclusion diet in infancy." Clinical and translational allergy vol. 6 (2016): 20. doi: https://doi.org/10.1186/s13601-016-0109-8
Maslin K, Oliver EM, Scally KS, Atkinson J, Foote K, Venter C, Roberts G, Grimshaw KE. Nutritional adequacy of a cows' milk exclusion diet in infancy. Clin Transl Allergy. 2016 Jun 02;6:20. doi: 10.1186/s13601-016-0109-8. eCollection 2016. PMID: 27257475; PMCID: PMC4890506.
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Establishing a Southern Swedish Malignant Melanoma OMICS and biobank clinical capability.

Clinical and translational medicine

Welinder C, Jönsson G, Ingvar C, Lundgren L, Olsson H, Breslin T, Végvári A, Laurell T, Rezeli M, Jansson B, Baldetorp B, Marko-Varga G.
PMID: 23445834
Clin Transl Med. 2013 Feb 27;2(1):7. doi: 10.1186/2001-1326-2-7.

BACKGROUND: The objectives and goals of the Southern Swedish Malignant Melanoma (SSMM) are to develop, build and utilize cutting edge biobanks and OMICS platforms to better understand disease pathology and drug mechanisms. The SSMM research team is a truly...

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Welinder C, Jönsson G, Ingvar C, et al. Establishing a Southern Swedish Malignant Melanoma OMICS and biobank clinical capability. Clin Transl Med. 2013;2(1):7doi: 10.1186/2001-1326-2-7.
Welinder, C., Jönsson, G., Ingvar, C., Lundgren, L., Olsson, H., Breslin, T., Végvári, A., Laurell, T., Rezeli, M., Jansson, B., Baldetorp, B., & Marko-Varga, G. (2013). Establishing a Southern Swedish Malignant Melanoma OMICS and biobank clinical capability. Clinical and translational medicine, 2(1), 7. https://doi.org/10.1186/2001-1326-2-7
Welinder, Charlotte, et al. "Establishing a Southern Swedish Malignant Melanoma OMICS and biobank clinical capability." Clinical and translational medicine vol. 2,1 (2013): 7. doi: https://doi.org/10.1186/2001-1326-2-7
Welinder C, Jönsson G, Ingvar C, Lundgren L, Olsson H, Breslin T, Végvári A, Laurell T, Rezeli M, Jansson B, Baldetorp B, Marko-Varga G. Establishing a Southern Swedish Malignant Melanoma OMICS and biobank clinical capability. Clin Transl Med. 2013 Feb 27;2(1):7. doi: 10.1186/2001-1326-2-7. PMID: 23445834; PMCID: PMC3599425.
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Characterization of 3D-Printed Moulds for Soft Lithography of Millifluidic Devices.

Micromachines

Mohd Fuad N, Carve M, Kaslin J, Wlodkowic D.
PMID: 30424050
Micromachines (Basel). 2018 Mar 08;9(3). doi: 10.3390/mi9030116.

Increased demand for inexpensive and rapid prototyping methods for micro- and millifluidic lab-on-a-chip (LOC) devices has stimulated considerable interest in alternative cost-effective fabrication techniques. Additive manufacturing (AM)-also called three-dimensional (3D) printing-provides an attractive alternative to conventional fabrication techniques. AM...

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Mohd Fuad N, Carve M, Kaslin J, et al. Characterization of 3D-Printed Moulds for Soft Lithography of Millifluidic Devices. Micromachines (Basel). 2018;9(3)doi: 10.3390/mi9030116.
Mohd Fuad, N., Carve, M., Kaslin, J., & Wlodkowic, D. (2018). Characterization of 3D-Printed Moulds for Soft Lithography of Millifluidic Devices. Micromachines, 9(3), . https://doi.org/10.3390/mi9030116
Mohd Fuad, Nurul, et al. "Characterization of 3D-Printed Moulds for Soft Lithography of Millifluidic Devices." Micromachines vol. 9,3 (2018). doi: https://doi.org/10.3390/mi9030116
Mohd Fuad N, Carve M, Kaslin J, Wlodkowic D. Characterization of 3D-Printed Moulds for Soft Lithography of Millifluidic Devices. Micromachines (Basel). 2018 Mar 08;9(3). doi: 10.3390/mi9030116. PMID: 30424050; PMCID: PMC6187831.
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Corrigendum: Genome-wide copy number analysis of single cells.

Nature protocols

Baslan T, Kendall J, Rodgers L, Cox H, Riggs M, Stepansky A, Troge J, Ravi K, Esposito D, Lakshmi B, Wigler M, Navin N, Hicks J.
PMID: 26914320
Nat Protoc. 2016 Mar;11(3):616. doi: 10.1038/nprot0316.616b. Epub 2016 Feb 25.

No abstract available.

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Baslan T, Kendall J, Rodgers L, et al. Corrigendum: Genome-wide copy number analysis of single cells. Nat Protoc. 2016;11(3):616doi: 10.1038/nprot0316.616b.
Baslan, T., Kendall, J., Rodgers, L., Cox, H., Riggs, M., Stepansky, A., Troge, J., Ravi, K., Esposito, D., Lakshmi, B., Wigler, M., Navin, N., & Hicks, J. (2016). Corrigendum: Genome-wide copy number analysis of single cells. Nature protocols, 11(3), 616. https://doi.org/10.1038/nprot0316.616b
Baslan, Timour, et al. "Corrigendum: Genome-wide copy number analysis of single cells." Nature protocols vol. 11,3 (2016): 616. doi: https://doi.org/10.1038/nprot0316.616b
Baslan T, Kendall J, Rodgers L, Cox H, Riggs M, Stepansky A, Troge J, Ravi K, Esposito D, Lakshmi B, Wigler M, Navin N, Hicks J. Corrigendum: Genome-wide copy number analysis of single cells. Nat Protoc. 2016 Mar;11(3):616. doi: 10.1038/nprot0316.616b. Epub 2016 Feb 25. PMID: 26914320.
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Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions.

Genetics, selection, evolution : GSE

Fraslin C, Dechamp N, Bernard M, Krieg F, Hervet C, Guyomard R, Esquerré D, Barbieri J, Kuchly C, Duchaud E, Boudinot P, Rochat T, Bernardet JF, Quillet E.
PMID: 30894115
Genet Sel Evol. 2019 Mar 20;51(1):11. doi: 10.1186/s12711-019-0451-0.

After publication of this work [1], we noted that there was an error in Table 3 Line 4.

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Fraslin C, Dechamp N, Bernard M, et al. Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions. Genet Sel Evol. 2019;51(1):11doi: 10.1186/s12711-019-0451-0.
Fraslin, C., Dechamp, N., Bernard, M., Krieg, F., Hervet, C., Guyomard, R., Esquerré, D., Barbieri, J., Kuchly, C., Duchaud, E., Boudinot, P., Rochat, T., Bernardet, J. F., & Quillet, E. (2019). Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions. Genetics, selection, evolution : GSE, 51(1), 11. https://doi.org/10.1186/s12711-019-0451-0
Fraslin, Clémence, et al. "Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions." Genetics, selection, evolution : GSE vol. 51,1 (2019): 11. doi: https://doi.org/10.1186/s12711-019-0451-0
Fraslin C, Dechamp N, Bernard M, Krieg F, Hervet C, Guyomard R, Esquerré D, Barbieri J, Kuchly C, Duchaud E, Boudinot P, Rochat T, Bernardet JF, Quillet E. Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions. Genet Sel Evol. 2019 Mar 20;51(1):11. doi: 10.1186/s12711-019-0451-0. PMID: 30894115; PMCID: PMC6427846.
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A Survey of Camp Leadership to Assess Immunization Requirements, Policies, and Practices in a National Cohort of Summer Camps.

JAMA pediatrics

Bunke C, Schellpfeffer N, Garst B, Bradin S, Gaslin T, Ambrose M, Hashikawa AN.
PMID: 33427860
JAMA Pediatr. 2021 Apr 01;175(4):421-423. doi: 10.1001/jamapediatrics.2020.5342.

No abstract available.

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Bunke C, Schellpfeffer N, Garst B, et al. A Survey of Camp Leadership to Assess Immunization Requirements, Policies, and Practices in a National Cohort of Summer Camps. JAMA Pediatr. 2021;175(4):421-423doi: 10.1001/jamapediatrics.2020.5342.
Bunke, C., Schellpfeffer, N., Garst, B., Bradin, S., Gaslin, T., Ambrose, M., & Hashikawa, A. N. (2021). A Survey of Camp Leadership to Assess Immunization Requirements, Policies, and Practices in a National Cohort of Summer Camps. JAMA pediatrics, 175(4), 421-423. https://doi.org/10.1001/jamapediatrics.2020.5342
Bunke, Carissa, et al. "A Survey of Camp Leadership to Assess Immunization Requirements, Policies, and Practices in a National Cohort of Summer Camps." JAMA pediatrics vol. 175,4 (2021): 421-423. doi: https://doi.org/10.1001/jamapediatrics.2020.5342
Bunke C, Schellpfeffer N, Garst B, Bradin S, Gaslin T, Ambrose M, Hashikawa AN. A Survey of Camp Leadership to Assess Immunization Requirements, Policies, and Practices in a National Cohort of Summer Camps. JAMA Pediatr. 2021 Apr 01;175(4):421-423. doi: 10.1001/jamapediatrics.2020.5342. PMID: 33427860; PMCID: PMC7802003.
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Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles.

Chemistry of materials : a publication of the American Chemical Society

Andrikopoulos N, Song Z, Wan X, Douek AM, Javed I, Fu C, Xing Y, Xin F, Li Y, Kakinen A, Koppel K, Qiao R, Whittaker AK, Kaslin J, Davis TP, Song Y, Ding F, Ke PC.
PMID: 34887621
Chem Mater. 2021 Aug 24;33(16):6484-6500. doi: 10.1021/acs.chemmater.1c01947. Epub 2021 Aug 03.

Amyloid aggregation is a ubiquitous form of protein misfolding underlying the pathologies of Alzheimer's disease (AD), Parkinson's disease (PD) and type 2 diabetes (T2D), three primary forms of human amyloid diseases. While much has been learned about the origin,...

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Andrikopoulos N, Song Z, Wan X, et al. Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles. Chem Mater. 2021;33(16):6484-6500doi: 10.1021/acs.chemmater.1c01947.
Andrikopoulos, N., Song, Z., Wan, X., Douek, A. M., Javed, I., Fu, C., Xing, Y., Xin, F., Li, Y., Kakinen, A., Koppel, K., Qiao, R., Whittaker, A. K., Kaslin, J., Davis, T. P., Song, Y., Ding, F., & Ke, P. C. (2021). Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles. Chemistry of materials : a publication of the American Chemical Society, 33(16), 6484-6500. https://doi.org/10.1021/acs.chemmater.1c01947
Andrikopoulos, Nicholas, et al. "Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles." Chemistry of materials : a publication of the American Chemical Society vol. 33,16 (2021): 6484-6500. doi: https://doi.org/10.1021/acs.chemmater.1c01947
Andrikopoulos N, Song Z, Wan X, Douek AM, Javed I, Fu C, Xing Y, Xin F, Li Y, Kakinen A, Koppel K, Qiao R, Whittaker AK, Kaslin J, Davis TP, Song Y, Ding F, Ke PC. Inhibition of Amyloid Aggregation and Toxicity with Janus Iron Oxide Nanoparticles. Chem Mater. 2021 Aug 24;33(16):6484-6500. doi: 10.1021/acs.chemmater.1c01947. Epub 2021 Aug 03. PMID: 34887621; PMCID: PMC8651233.
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Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts.

Oncogene

Kuiken HJ, Dhakal S, Selfors LM, Friend CM, Zhang T, Callari M, Schackmann RCJ, Gray GK, Crowdis J, Bhang HC, Baslan T, Stegmeier F, Gygi SP, Caldas C, Brugge JS.
PMID: 34703030
Oncogene. 2021 Oct 26; doi: 10.1038/s41388-021-02075-y. Epub 2021 Oct 26.

Intratumoral heterogeneity has been described for various tumor types and models of human cancer, and can have profound effects on tumor progression and drug resistance. This study describes an in-depth analysis of molecular and functional heterogeneity among subclonal populations...

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Kuiken HJ, Dhakal S, Selfors LM, et al. Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts. Oncogene. 2021;doi: 10.1038/s41388-021-02075-y.
Kuiken, H. J., Dhakal, S., Selfors, L. M., Friend, C. M., Zhang, T., Callari, M., Schackmann, R. C. J., Gray, G. K., Crowdis, J., Bhang, H. C., Baslan, T., Stegmeier, F., Gygi, S. P., Caldas, C., & Brugge, J. S. (2021). Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts. Oncogene, . https://doi.org/10.1038/s41388-021-02075-y
Kuiken, Hendrik J, et al. "Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts." Oncogene vol. (2021). doi: https://doi.org/10.1038/s41388-021-02075-y
Kuiken HJ, Dhakal S, Selfors LM, Friend CM, Zhang T, Callari M, Schackmann RCJ, Gray GK, Crowdis J, Bhang HC, Baslan T, Stegmeier F, Gygi SP, Caldas C, Brugge JS. Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts. Oncogene. 2021 Oct 26; doi: 10.1038/s41388-021-02075-y. Epub 2021 Oct 26. PMID: 34703030.
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Objective Measurements of Physical Activity and Sedentary Behavior Using Wearable Devices in Patients With Axial Spondyloarthritis: Protocol for a Systematic Review.

JMIR research protocols

Carlin T, Soulard J, Aubourg T, Knitza J, Vuillerme N.
PMID: 34842559
JMIR Res Protoc. 2021 Nov 25;10(11):e23359. doi: 10.2196/23359.

BACKGROUND: Axial spondyloarthritis (axSpA) is a subgroup of inflammatory rheumatic diseases. Practicing regular exercise is critical to manage pain and stiffness, reduce disease activity, and improve physical functioning, spinal mobility, and cardiorespiratory function. Accordingly, monitoring physical activity and sedentary...

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Carlin T, Soulard J, Aubourg T, et al. Objective Measurements of Physical Activity and Sedentary Behavior Using Wearable Devices in Patients With Axial Spondyloarthritis: Protocol for a Systematic Review. JMIR Res Protoc. 2021;10(11):e23359doi: 10.2196/23359.
Carlin, T., Soulard, J., Aubourg, T., Knitza, J., & Vuillerme, N. (2021). Objective Measurements of Physical Activity and Sedentary Behavior Using Wearable Devices in Patients With Axial Spondyloarthritis: Protocol for a Systematic Review. JMIR research protocols, 10(11), e23359. https://doi.org/10.2196/23359
Carlin, Thomas, et al. "Objective Measurements of Physical Activity and Sedentary Behavior Using Wearable Devices in Patients With Axial Spondyloarthritis: Protocol for a Systematic Review." JMIR research protocols vol. 10,11 (2021): e23359. doi: https://doi.org/10.2196/23359
Carlin T, Soulard J, Aubourg T, Knitza J, Vuillerme N. Objective Measurements of Physical Activity and Sedentary Behavior Using Wearable Devices in Patients With Axial Spondyloarthritis: Protocol for a Systematic Review. JMIR Res Protoc. 2021 Nov 25;10(11):e23359. doi: 10.2196/23359. PMID: 34842559; PMCID: PMC8663650.
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Showing 13 to 24 of 157 entries