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Showing 25 to 36 of 53 entries
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The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome.

Clinical and translational medicine

Betancourt LH, Gil J, Sanchez A, Doma V, Kuras M, Murillo JR, Velasquez E, Çakır U, Kim Y, Sugihara Y, Parada IP, Szeitz B, Appelqvist R, Wieslander E, Welinder C, de Almeida NP, Woldmar N, Marko-Varga M, Eriksson J, Pawłowski K, Baldetorp B, Ingvar C, Olsson H, Lundgren L, Lindberg H, Oskolas H, Lee B, Berge E, Sjögren M, Eriksson C, Kim D, Kwon HJ, Knudsen B, Rezeli M, Malm J, Hong R, Horvath P, Szász AM, Tímár J, Kárpáti S, Horvatovich P, Miliotis T, Nishimura T, Kato H, Steinfelder E, Oppermann M, Miller K, Florindi F, Zhou Q, Domont GB, Pizzatti L, Nogueira FCS, Szadai L, Németh IB, Ekedahl H, Fenyö D, Marko-Varga G.
PMID: 34323402
Clin Transl Med. 2021 Jul;11(7):e451. doi: 10.1002/ctm2.451.

The MM500 meta-study aims to establish a knowledge basis of the tumor proteome to serve as a complement to genome and transcriptome studies. Somatic mutations and their effect on the transcriptome have been extensively characterized in melanoma. However, the...

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Betancourt LH, Gil J, Sanchez A, et al. The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome. Clin Transl Med. 2021;11(7):e451doi: 10.1002/ctm2.451.
Betancourt, L. H., Gil, J., Sanchez, A., Doma, V., Kuras, M., Murillo, J. R., Velasquez, E., Çakır, U., Kim, Y., Sugihara, Y., Parada, I. P., Szeitz, B., Appelqvist, R., Wieslander, E., Welinder, C., de Almeida, N. P., Woldmar, N., Marko-Varga, M., Eriksson, J., Pawłowski, K., Baldetorp, B., Ingvar, C., Olsson, H., Lundgren, L., Lindberg, H., Oskolas, H., Lee, B., Berge, E., Sjögren, M., Eriksson, C., Kim, D., Kwon, H. J., Knudsen, B., Rezeli, M., Malm, J., Hong, R., Horvath, P., Szász, A. M., Tímár, J., Kárpáti, S., Horvatovich, P., Miliotis, T., Nishimura, T., Kato, H., Steinfelder, E., Oppermann, M., Miller, K., Florindi, F., Zhou, Q., Domont, G. B., Pizzatti, L., Nogueira, F. C. S., Szadai, L., Németh, I. B., Ekedahl, H., Fenyö, D., & Marko-Varga, G. (2021). The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome. Clinical and translational medicine, 11(7), e451. https://doi.org/10.1002/ctm2.451
Betancourt, Lazaro Hiram, et al. "The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome." Clinical and translational medicine vol. 11,7 (2021): e451. doi: https://doi.org/10.1002/ctm2.451
Betancourt LH, Gil J, Sanchez A, Doma V, Kuras M, Murillo JR, Velasquez E, Çakır U, Kim Y, Sugihara Y, Parada IP, Szeitz B, Appelqvist R, Wieslander E, Welinder C, de Almeida NP, Woldmar N, Marko-Varga M, Eriksson J, Pawłowski K, Baldetorp B, Ingvar C, Olsson H, Lundgren L, Lindberg H, Oskolas H, Lee B, Berge E, Sjögren M, Eriksson C, Kim D, Kwon HJ, Knudsen B, Rezeli M, Malm J, Hong R, Horvath P, Szász AM, Tímár J, Kárpáti S, Horvatovich P, Miliotis T, Nishimura T, Kato H, Steinfelder E, Oppermann M, Miller K, Florindi F, Zhou Q, Domont GB, Pizzatti L, Nogueira FCS, Szadai L, Németh IB, Ekedahl H, Fenyö D, Marko-Varga G. The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome. Clin Transl Med. 2021 Jul;11(7):e451. doi: 10.1002/ctm2.451. PMID: 34323402; PMCID: PMC8299047.
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Spin State Switching in Heptauthrene Nanostructure by Electric Field: Computational Study.

International journal of molecular sciences

Szałowski K.
PMID: 34948161
Int J Mol Sci. 2021 Dec 13;22(24). doi: 10.3390/ijms222413364.

Recent experimental studies proved the presence of the triplet spin state in atomically precise heptauthrene nanostructure of nanographene type (composed of two interconnected triangles with zigzag edge). In the paper, we report the computational study predicting the possibility of...

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Szałowski K. Spin State Switching in Heptauthrene Nanostructure by Electric Field: Computational Study. Int J Mol Sci. 2021;22(24)doi: 10.3390/ijms222413364.
Szałowski, K. (2021). Spin State Switching in Heptauthrene Nanostructure by Electric Field: Computational Study. International journal of molecular sciences, 22(24), . https://doi.org/10.3390/ijms222413364
Szałowski, Karol. "Spin State Switching in Heptauthrene Nanostructure by Electric Field: Computational Study." International journal of molecular sciences vol. 22,24 (2021). doi: https://doi.org/10.3390/ijms222413364
Szałowski K. Spin State Switching in Heptauthrene Nanostructure by Electric Field: Computational Study. Int J Mol Sci. 2021 Dec 13;22(24). doi: 10.3390/ijms222413364. PMID: 34948161.
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Photosensitization and the photocurrent switching effect in nanocrystalline titanium dioxide functionalized with iron(II) complexes: a comparative study.

Chemistry (Weinheim an der Bergstrasse, Germany)

Macyk W, Stochel G, Szaciłowski K.
PMID: 17534998
Chemistry. 2007;13(20):5676-87. doi: 10.1002/chem.200700226.

Selected iron(II) complexes (ferrocene, ferrocenylboronic acid, hexacyanoferrate(II)) have been used as photosensitizers of titanium dioxide. Various types of electronic interactions between the surface complex and the semiconducting support are reflected in different yields of photocurrent generated upon visible-light irradiation...

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Macyk W, Stochel G, Szaciłowski K. Photosensitization and the photocurrent switching effect in nanocrystalline titanium dioxide functionalized with iron(II) complexes: a comparative study. Chemistry. 2007;13(20):5676-87doi: 10.1002/chem.200700226.
Macyk, W., Stochel, G., & Szaciłowski, K. (2007). Photosensitization and the photocurrent switching effect in nanocrystalline titanium dioxide functionalized with iron(II) complexes: a comparative study. Chemistry (Weinheim an der Bergstrasse, Germany), 13(20), 5676-87. https://doi.org/10.1002/chem.200700226
Macyk, Wojciech, et al. "Photosensitization and the photocurrent switching effect in nanocrystalline titanium dioxide functionalized with iron(II) complexes: a comparative study." Chemistry (Weinheim an der Bergstrasse, Germany) vol. 13,20 (2007): 5676-87. doi: https://doi.org/10.1002/chem.200700226
Macyk W, Stochel G, Szaciłowski K. Photosensitization and the photocurrent switching effect in nanocrystalline titanium dioxide functionalized with iron(II) complexes: a comparative study. Chemistry. 2007;13(20):5676-87. doi: 10.1002/chem.200700226. PMID: 17534998.
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UV-visible and (1)H-(15)N NMR spectroscopic studies of colorimetric thiosemicarbazide anion sensors.

Organic & biomolecular chemistry

Farrugia KN, Makuc D, Podborska A, Szaciłowski K, Plavec J, Magri DC.
PMID: 25451865
Org Biomol Chem. 2015 Feb 14;13(6):1662-72. doi: 10.1039/c4ob02091j.

Four model thiosemicarbazide anion chemosensors containing three N-H bonds, substituted with phenyl and/or 4-nitrophenyl units, were synthesised and studied for their anion binding abilities with hydroxide, fluoride, acetate, dihydrogen phosphate and chloride. The anion binding properties were studied in...

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Farrugia KN, Makuc D, Podborska A, et al. UV-visible and (1)H-(15)N NMR spectroscopic studies of colorimetric thiosemicarbazide anion sensors. Org Biomol Chem. 2015;13(6):1662-72doi: 10.1039/c4ob02091j.
Farrugia, K. N., Makuc, D., Podborska, A., Szaciłowski, K., Plavec, J., & Magri, D. C. (2015). UV-visible and (1)H-(15)N NMR spectroscopic studies of colorimetric thiosemicarbazide anion sensors. Organic & biomolecular chemistry, 13(6), 1662-72. https://doi.org/10.1039/c4ob02091j
Farrugia, Kristina N, et al. "UV-visible and (1)H-(15)N NMR spectroscopic studies of colorimetric thiosemicarbazide anion sensors." Organic & biomolecular chemistry vol. 13,6 (2015): 1662-72. doi: https://doi.org/10.1039/c4ob02091j
Farrugia KN, Makuc D, Podborska A, Szaciłowski K, Plavec J, Magri DC. UV-visible and (1)H-(15)N NMR spectroscopic studies of colorimetric thiosemicarbazide anion sensors. Org Biomol Chem. 2015 Feb 14;13(6):1662-72. doi: 10.1039/c4ob02091j. PMID: 25451865.
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Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58.

PeerJ

Hareza A, Bakun M, Świderska B, Dudkiewicz M, Koscielny A, Bajur A, Jaworski J, Dadlez M, Pawłowski K.
PMID: 29666759
PeerJ. 2018 Apr 09;6:e4599. doi: 10.7717/peerj.4599. eCollection 2018.

Many kinases are still 'orphans,' which means knowledge about their substrates, and often also about the processes they regulate, is lacking. Here, DIA1/C3orf58, a member of a novel predicted kinase-like family, is shown to be present in the endoplasmic...

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Hareza A, Bakun M, Świderska B, et al. Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PeerJ. 2018;6:e4599doi: 10.7717/peerj.4599.
Hareza, A., Bakun, M., Świderska, B., Dudkiewicz, M., Koscielny, A., Bajur, A., Jaworski, J., Dadlez, M., & Pawłowski, K. (2018). Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PeerJ, 6e4599. https://doi.org/10.7717/peerj.4599
Hareza, Agnieszka, et al. "Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58." PeerJ vol. 6 (2018): e4599. doi: https://doi.org/10.7717/peerj.4599
Hareza A, Bakun M, Świderska B, Dudkiewicz M, Koscielny A, Bajur A, Jaworski J, Dadlez M, Pawłowski K. Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PeerJ. 2018 Apr 09;6:e4599. doi: 10.7717/peerj.4599. eCollection 2018. PMID: 29666759; PMCID: PMC5896498.
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Towards Embedded Computation with Building Materials.

Materials (Basel, Switzerland)

Przyczyna D, Suchecki M, Adamatzky A, Szaciłowski K.
PMID: 33807438
Materials (Basel). 2021 Mar 31;14(7). doi: 10.3390/ma14071724.

We present results showing the capability of concrete-based information processing substrate in the signal classification task in accordance with

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Przyczyna D, Suchecki M, Adamatzky A, et al. Towards Embedded Computation with Building Materials. Materials (Basel). 2021;14(7)doi: 10.3390/ma14071724.
Przyczyna, D., Suchecki, M., Adamatzky, A., & Szaciłowski, K. (2021). Towards Embedded Computation with Building Materials. Materials (Basel, Switzerland), 14(7), . https://doi.org/10.3390/ma14071724
Przyczyna, Dawid, et al. "Towards Embedded Computation with Building Materials." Materials (Basel, Switzerland) vol. 14,7 (2021). doi: https://doi.org/10.3390/ma14071724
Przyczyna D, Suchecki M, Adamatzky A, Szaciłowski K. Towards Embedded Computation with Building Materials. Materials (Basel). 2021 Mar 31;14(7). doi: 10.3390/ma14071724. PMID: 33807438; PMCID: PMC8038044.
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A novel critical behavior of the spin-1 Blume-Capel model with a distance-dependent nearest-neighbor exchange interaction and magneto-elastic coupling.

Journal of physics. Condensed matter : an Institute of Physics journal

Jaščur M, Rončík M, Balcerzak T, Szałowski K.
PMID: 32241000
J Phys Condens Matter. 2020 Apr 02;32(33):335801. doi: 10.1088/1361-648X/ab85f5. Epub 2020 Apr 02.

A generalized spin-1 Blume-Capel model with distance/volume dependent nearest-neighbor exchange interaction is introduced and investigated using the standard methods of statistical mechanics. Besides of the volume-dependent magnetic energy, the static electromagnetic energy and anharmonic Einstein phonon contribution are also...

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Jaščur M, Rončík M, Balcerzak T, et al. A novel critical behavior of the spin-1 Blume-Capel model with a distance-dependent nearest-neighbor exchange interaction and magneto-elastic coupling. J Phys Condens Matter. 2020;32(33):335801doi: 10.1088/1361-648X/ab85f5.
Jaščur, M., Rončík, M., Balcerzak, T., & Szałowski, K. (2020). A novel critical behavior of the spin-1 Blume-Capel model with a distance-dependent nearest-neighbor exchange interaction and magneto-elastic coupling. Journal of physics. Condensed matter : an Institute of Physics journal, 32(33), 335801. https://doi.org/10.1088/1361-648X/ab85f5
Jaščur, M, et al. "A novel critical behavior of the spin-1 Blume-Capel model with a distance-dependent nearest-neighbor exchange interaction and magneto-elastic coupling." Journal of physics. Condensed matter : an Institute of Physics journal vol. 32,33 (2020): 335801. doi: https://doi.org/10.1088/1361-648X/ab85f5
Jaščur M, Rončík M, Balcerzak T, Szałowski K. A novel critical behavior of the spin-1 Blume-Capel model with a distance-dependent nearest-neighbor exchange interaction and magneto-elastic coupling. J Phys Condens Matter. 2020 Apr 02;32(33):335801. doi: 10.1088/1361-648X/ab85f5. Epub 2020 Apr 02. PMID: 32241000.
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Electrocaloric effect in cubic Hubbard nanoclusters.

Scientific reports

Szałowski K, Balcerzak T.
PMID: 29572532
Sci Rep. 2018 Mar 23;8(1):5116. doi: 10.1038/s41598-018-23443-x.

In the paper a computational study of the electrocaloric effect is presented for a cubic nanocluster consisting of 8 sites. The system of interest is described by means of an extended Hubbard model in external electric field at half...

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Szałowski K, Balcerzak T. Electrocaloric effect in cubic Hubbard nanoclusters. Sci Rep. 2018;8(1):5116doi: 10.1038/s41598-018-23443-x.
Szałowski, K., & Balcerzak, T. (2018). Electrocaloric effect in cubic Hubbard nanoclusters. Scientific reports, 8(1), 5116. https://doi.org/10.1038/s41598-018-23443-x
Szałowski, Karol, and Balcerzak, Tadeusz. "Electrocaloric effect in cubic Hubbard nanoclusters." Scientific reports vol. 8,1 (2018): 5116. doi: https://doi.org/10.1038/s41598-018-23443-x
Szałowski K, Balcerzak T. Electrocaloric effect in cubic Hubbard nanoclusters. Sci Rep. 2018 Mar 23;8(1):5116. doi: 10.1038/s41598-018-23443-x. PMID: 29572532; PMCID: PMC5865123.
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Redox characterization of semiconductors based on electrochemical measurements combined with UV-Vis diffuse reflectance spectroscopy.

Physical chemistry chemical physics : PCCP

Świętek E, Pilarczyk K, Derdzińska J, Szaciłowski K, Macyk W.
PMID: 23873144
Phys Chem Chem Phys. 2013 Sep 14;15(34):14256-61. doi: 10.1039/c3cp52129j. Epub 2013 Jul 22.

Several techniques can be applied to characterize redox properties of wide bandgap semiconductors, however some of them are of limited use. In this paper we propose a new modification of the old spectroelectrochemical method developed two decades ago. A...

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Świętek E, Pilarczyk K, Derdzińska J, et al. Redox characterization of semiconductors based on electrochemical measurements combined with UV-Vis diffuse reflectance spectroscopy. Phys Chem Chem Phys. 2013;15(34):14256-61doi: 10.1039/c3cp52129j.
Świętek, E., Pilarczyk, K., Derdzińska, J., Szaciłowski, K., & Macyk, W. (2013). Redox characterization of semiconductors based on electrochemical measurements combined with UV-Vis diffuse reflectance spectroscopy. Physical chemistry chemical physics : PCCP, 15(34), 14256-61. https://doi.org/10.1039/c3cp52129j
Świętek, Elżbieta, et al. "Redox characterization of semiconductors based on electrochemical measurements combined with UV-Vis diffuse reflectance spectroscopy." Physical chemistry chemical physics : PCCP vol. 15,34 (2013): 14256-61. doi: https://doi.org/10.1039/c3cp52129j
Świętek E, Pilarczyk K, Derdzińska J, Szaciłowski K, Macyk W. Redox characterization of semiconductors based on electrochemical measurements combined with UV-Vis diffuse reflectance spectroscopy. Phys Chem Chem Phys. 2013 Sep 14;15(34):14256-61. doi: 10.1039/c3cp52129j. Epub 2013 Jul 22. PMID: 23873144.
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A novel conserved family of Macro-like domains-putative new players in ADP-ribosylation signaling.

PeerJ

Dudkiewicz M, Pawłowski K.
PMID: 31106069
PeerJ. 2019 May 01;7:e6863. doi: 10.7717/peerj.6863. eCollection 2019.

The presence of many completely uncharacterized proteins, even in well-studied organisms such as humans, seriously hampers a full understanding of the functioning of living cells. One such example is the human protein C12ORF4, which belongs to the DUF2362 family,...

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Dudkiewicz M, Pawłowski K. A novel conserved family of Macro-like domains-putative new players in ADP-ribosylation signaling. PeerJ. 2019;7:e6863doi: 10.7717/peerj.6863.
Dudkiewicz, M., & Pawłowski, K. (2019). A novel conserved family of Macro-like domains-putative new players in ADP-ribosylation signaling. PeerJ, 7e6863. https://doi.org/10.7717/peerj.6863
Dudkiewicz, Małgorzata, and Pawłowski, Krzysztof. "A novel conserved family of Macro-like domains-putative new players in ADP-ribosylation signaling." PeerJ vol. 7 (2019): e6863. doi: https://doi.org/10.7717/peerj.6863
Dudkiewicz M, Pawłowski K. A novel conserved family of Macro-like domains-putative new players in ADP-ribosylation signaling. PeerJ. 2019 May 01;7:e6863. doi: 10.7717/peerj.6863. eCollection 2019. PMID: 31106069; PMCID: PMC6500376.
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Enhanced ion binding by the benzocrown receptor and a carbonyl of the aminonaphthalimide fluorophore in water-soluble logic gates.

Organic & biomolecular chemistry

Diacono A, Aquilina MC, Calleja A, Agius G, Gauci G, Szaciłowski K, Magri DC.
PMID: 32236273
Org Biomol Chem. 2020 Jul 01;18(25):4773-4782. doi: 10.1039/d0ob00059k.

Two fluorescent logic gates 1 and 2 were designed and synthesised with a 'receptor1-spacer1-fluorophore-spacer2-receptor2' format. The molecules comprise of an aminonaphthalimide fluorophore, methylpiperazine and either benzo-15-crown-5 or benzo-18-crown-6. Model 3, with a weakly binding 3,4-dimethoxyphenyl moiety, was also synthesised....

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Diacono A, Aquilina MC, Calleja A, et al. Enhanced ion binding by the benzocrown receptor and a carbonyl of the aminonaphthalimide fluorophore in water-soluble logic gates. Org Biomol Chem. 2020;18(25):4773-4782doi: 10.1039/d0ob00059k.
Diacono, A., Aquilina, M. C., Calleja, A., Agius, G., Gauci, G., Szaciłowski, K., & Magri, D. C. (2020). Enhanced ion binding by the benzocrown receptor and a carbonyl of the aminonaphthalimide fluorophore in water-soluble logic gates. Organic & biomolecular chemistry, 18(25), 4773-4782. https://doi.org/10.1039/d0ob00059k
Diacono, Andreas, et al. "Enhanced ion binding by the benzocrown receptor and a carbonyl of the aminonaphthalimide fluorophore in water-soluble logic gates." Organic & biomolecular chemistry vol. 18,25 (2020): 4773-4782. doi: https://doi.org/10.1039/d0ob00059k
Diacono A, Aquilina MC, Calleja A, Agius G, Gauci G, Szaciłowski K, Magri DC. Enhanced ion binding by the benzocrown receptor and a carbonyl of the aminonaphthalimide fluorophore in water-soluble logic gates. Org Biomol Chem. 2020 Jul 01;18(25):4773-4782. doi: 10.1039/d0ob00059k. PMID: 32236273.
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Water-Soluble Colorimetric Amino[.

ACS omega

Cardona MA, Makuc D, Szaciłowski K, Plavec J, Magri DC.
PMID: 31457862
ACS Omega. 2017 Sep 26;2(9):6159-6166. doi: 10.1021/acsomega.7b00887. eCollection 2017 Sep 30.

Water-soluble azobenzene derivatives containing amino[

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Cardona MA, Makuc D, Szaciłowski K, et al. Water-Soluble Colorimetric Amino[. ACS Omega. 2017;2(9):6159-6166doi: 10.1021/acsomega.7b00887.
Cardona, M. A., Makuc, D., Szaciłowski, K., Plavec, J., & Magri, D. C. (2017). Water-Soluble Colorimetric Amino[. ACS omega, 2(9), 6159-6166. https://doi.org/10.1021/acsomega.7b00887
Cardona, Maria A, et al. "Water-Soluble Colorimetric Amino[." ACS omega vol. 2,9 (2017): 6159-6166. doi: https://doi.org/10.1021/acsomega.7b00887
Cardona MA, Makuc D, Szaciłowski K, Plavec J, Magri DC. Water-Soluble Colorimetric Amino[. ACS Omega. 2017 Sep 26;2(9):6159-6166. doi: 10.1021/acsomega.7b00887. eCollection 2017 Sep 30. PMID: 31457862; PMCID: PMC6644513.
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Showing 25 to 36 of 53 entries