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Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of .

Oncotarget

West MD, Labat I, Sternberg H, Larocca D, Nasonkin I, Chapman KB, Singh R, Makarev E, Aliper A, Kazennov A, Alekseenko A, Shuvalov N, Cheskidova E, Alekseev A, Artemov A, Putin E, Mamoshina P, Pryanichnikov N, Larocca J, Copeland K, Izumchenko E, Korzinkin M, Zhavoronkov A.
PMID: 29487692
Oncotarget. 2017 Dec 28;9(8):7796-7811. doi: 10.18632/oncotarget.23748. eCollection 2018 Jan 30.

Here we present the application of deep neural network (DNN) ensembles trained on transcriptomic data to identify the novel markers associated with the mammalian embryonic-fetal transition (EFT). Molecular markers of this process could provide important insights into regulatory mechanisms...

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West MD, Labat I, Sternberg H, et al. Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of . Oncotarget. 2017;9(8):7796-7811doi: 10.18632/oncotarget.23748.
West, M. D., Labat, I., Sternberg, H., Larocca, D., Nasonkin, I., Chapman, K. B., Singh, R., Makarev, E., Aliper, A., Kazennov, A., Alekseenko, A., Shuvalov, N., Cheskidova, E., Alekseev, A., Artemov, A., Putin, E., Mamoshina, P., Pryanichnikov, N., Larocca, J., Copeland, K., Izumchenko, E., Korzinkin, M., & Zhavoronkov, A. (2018). Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of . Oncotarget, 9(8), 7796-7811. https://doi.org/10.18632/oncotarget.23748
West, Michael D, et al. "Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of ." Oncotarget vol. 9,8 (2018): 7796-7811. doi: https://doi.org/10.18632/oncotarget.23748
West MD, Labat I, Sternberg H, Larocca D, Nasonkin I, Chapman KB, Singh R, Makarev E, Aliper A, Kazennov A, Alekseenko A, Shuvalov N, Cheskidova E, Alekseev A, Artemov A, Putin E, Mamoshina P, Pryanichnikov N, Larocca J, Copeland K, Izumchenko E, Korzinkin M, Zhavoronkov A. Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of . Oncotarget. 2017 Dec 28;9(8):7796-7811. doi: 10.18632/oncotarget.23748. eCollection 2018 Jan 30. PMID: 29487692; PMCID: PMC5814259.
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Early Implementation of THAM for ICP Control: Therapeutic Hypothermia Avoidance and Reduction in Hypertonics/Hyperosmotics.

Case reports in critical care

Zeiler FA, Gillman LM, Teitelbaum J, West M.
PMID: 25544901
Case Rep Crit Care. 2014;2014:139342. doi: 10.1155/2014/139342. Epub 2014 Dec 04.

Background. Tromethamine (THAM) has been demonstrated to reduce intracranial pressure (ICP). Early consideration for THAM may reduce the need for other measures for ICP control. Objective. To describe 4 cases of early THAM therapy for ICP control and highlight...

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Zeiler FA, Gillman LM, Teitelbaum J, et al. Early Implementation of THAM for ICP Control: Therapeutic Hypothermia Avoidance and Reduction in Hypertonics/Hyperosmotics. Case Rep Crit Care. 2014;2014:139342doi: 10.1155/2014/139342.
Zeiler, F. A., Gillman, L. M., Teitelbaum, J., & West, M. (2014). Early Implementation of THAM for ICP Control: Therapeutic Hypothermia Avoidance and Reduction in Hypertonics/Hyperosmotics. Case reports in critical care, 2014139342. https://doi.org/10.1155/2014/139342
Zeiler, F A, et al. "Early Implementation of THAM for ICP Control: Therapeutic Hypothermia Avoidance and Reduction in Hypertonics/Hyperosmotics." Case reports in critical care vol. 2014 (2014): 139342. doi: https://doi.org/10.1155/2014/139342
Zeiler FA, Gillman LM, Teitelbaum J, West M. Early Implementation of THAM for ICP Control: Therapeutic Hypothermia Avoidance and Reduction in Hypertonics/Hyperosmotics. Case Rep Crit Care. 2014;2014:139342. doi: 10.1155/2014/139342. Epub 2014 Dec 04. PMID: 25544901; PMCID: PMC4273533.
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Editorial.

Environmental monitoring and assessment

Best EP, Haeck J.
PMID: 24259083
Environ Monit Assess. 1983 Sep;3(3):205. doi: 10.1007/BF00396212.

No abstract available.

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Best EP, Haeck J. Editorial. Environ Monit Assess. 1983;3(3):205doi: 10.1007/BF00396212.
Best, E. P., & Haeck, J. (1983). Editorial. Environmental monitoring and assessment, 3(3), 205. https://doi.org/10.1007/BF00396212
Best, E P, and Haeck, J. "Editorial." Environmental monitoring and assessment vol. 3,3 (1983): 205. doi: https://doi.org/10.1007/BF00396212
Best EP, Haeck J. Editorial. Environ Monit Assess. 1983 Sep;3(3):205. doi: 10.1007/BF00396212. PMID: 24259083.
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New onset epilepsy following unintentional durotomy in a patient on anti-psychiatric medication.

Journal of surgical case reports

West M, Prasad P, Ampat G.
PMID: 24945984
J Surg Case Rep. 2010 Apr 01;2010(2):3. doi: 10.1093/jscr/2010.2.3.

We would like to present a rare case report describing a case in which new-onset tonic-clonic seizures occurred following an unintentional durotomy during lumbar discectomy and decompression. Unintentional durotomy is a frequent complication of spinal surgical procedures, with a...

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West M, Prasad P, Ampat G. New onset epilepsy following unintentional durotomy in a patient on anti-psychiatric medication. J Surg Case Rep. 2010;2010(2):3doi: 10.1093/jscr/2010.2.3.
West, M., Prasad, P., & Ampat, G. (2010). New onset epilepsy following unintentional durotomy in a patient on anti-psychiatric medication. Journal of surgical case reports, 2010(2), 3. https://doi.org/10.1093/jscr/2010.2.3
West, M, et al. "New onset epilepsy following unintentional durotomy in a patient on anti-psychiatric medication." Journal of surgical case reports vol. 2010,2 (2010): 3. doi: https://doi.org/10.1093/jscr/2010.2.3
West M, Prasad P, Ampat G. New onset epilepsy following unintentional durotomy in a patient on anti-psychiatric medication. J Surg Case Rep. 2010 Apr 01;2010(2):3. doi: 10.1093/jscr/2010.2.3. PMID: 24945984; PMCID: PMC3649085.
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Automatically Recognizing Medication and Adverse Event Information From Food and Drug Administration's Adverse Event Reporting System Narratives.

JMIR medical informatics

Polepalli Ramesh B, Belknap SM, Li Z, Frid N, West DP, Yu H.
PMID: 25600332
JMIR Med Inform. 2014 Jun 27;2(1):e10. doi: 10.2196/medinform.3022.

BACKGROUND: The Food and Drug Administration's (FDA) Adverse Event Reporting System (FAERS) is a repository of spontaneously-reported adverse drug events (ADEs) for FDA-approved prescription drugs. FAERS reports include both structured reports and unstructured narratives. The narratives often include essential...

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Polepalli Ramesh B, Belknap SM, Li Z, et al. Automatically Recognizing Medication and Adverse Event Information From Food and Drug Administration's Adverse Event Reporting System Narratives. JMIR Med Inform. 2014;2(1):e10doi: 10.2196/medinform.3022.
Polepalli Ramesh, B., Belknap, S. M., Li, Z., Frid, N., West, D. P., & Yu, H. (2014). Automatically Recognizing Medication and Adverse Event Information From Food and Drug Administration's Adverse Event Reporting System Narratives. JMIR medical informatics, 2(1), e10. https://doi.org/10.2196/medinform.3022
Polepalli Ramesh, Balaji, et al. "Automatically Recognizing Medication and Adverse Event Information From Food and Drug Administration's Adverse Event Reporting System Narratives." JMIR medical informatics vol. 2,1 (2014): e10. doi: https://doi.org/10.2196/medinform.3022
Polepalli Ramesh B, Belknap SM, Li Z, Frid N, West DP, Yu H. Automatically Recognizing Medication and Adverse Event Information From Food and Drug Administration's Adverse Event Reporting System Narratives. JMIR Med Inform. 2014 Jun 27;2(1):e10. doi: 10.2196/medinform.3022. PMID: 25600332; PMCID: PMC4288072.
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Audit of the effectiveness of the nutrition team.

Clinical nutrition ESPEN

Youngman R, Patel M, West P, Eke M, Bhome G.
PMID: 28531513
Clin Nutr ESPEN. 2015 Oct;10(5):e195-e196. doi: 10.1016/j.clnesp.2015.03.044. Epub 2015 Aug 28.

No abstract available.

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Youngman R, Patel M, West P, et al. Audit of the effectiveness of the nutrition team. Clin Nutr ESPEN. 2015;10(5):e195-e196doi: 10.1016/j.clnesp.2015.03.044.
Youngman, R., Patel, M., West, P., Eke, M., & Bhome, G. (2015). Audit of the effectiveness of the nutrition team. Clinical nutrition ESPEN, 10(5), e195-e196. https://doi.org/10.1016/j.clnesp.2015.03.044
Youngman, R, et al. "Audit of the effectiveness of the nutrition team." Clinical nutrition ESPEN vol. 10,5 (2015): e195-e196. doi: https://doi.org/10.1016/j.clnesp.2015.03.044
Youngman R, Patel M, West P, Eke M, Bhome G. Audit of the effectiveness of the nutrition team. Clin Nutr ESPEN. 2015 Oct;10(5):e195-e196. doi: 10.1016/j.clnesp.2015.03.044. Epub 2015 Aug 28. PMID: 28531513.
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Single-Molecule Surface-Enhanced Raman Scattering: Can STEM/EELS Image Electromagnetic Hot Spots?.

The journal of physical chemistry letters

Mirsaleh-Kohan N, Iberi V, Simmons PD, Bigelow NW, Vaschillo A, Rowland MM, Best MD, Pennycook SJ, Masiello DJ, Guiton BS, Camden JP.
PMID: 26295787
J Phys Chem Lett. 2012 Aug 16;3(16):2303-9. doi: 10.1021/jz300967q. Epub 2012 Aug 07.

Since the observation of single-molecule surface-enhanced Raman scattering (SMSERS) in 1997, questions regarding the nature of the electromagnetic hot spots responsible for such observations still persist. For the first time, we employ electron-energy-loss spectroscopy (EELS) in a scanning transmission...

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Mirsaleh-Kohan N, Iberi V, Simmons PD, et al. Single-Molecule Surface-Enhanced Raman Scattering: Can STEM/EELS Image Electromagnetic Hot Spots?. J Phys Chem Lett. 2012;3(16):2303-9doi: 10.1021/jz300967q.
Mirsaleh-Kohan, N., Iberi, V., Simmons, P. D., Bigelow, N. W., Vaschillo, A., Rowland, M. M., Best, M. D., Pennycook, S. J., Masiello, D. J., Guiton, B. S., & Camden, J. P. (2012). Single-Molecule Surface-Enhanced Raman Scattering: Can STEM/EELS Image Electromagnetic Hot Spots?. The journal of physical chemistry letters, 3(16), 2303-9. https://doi.org/10.1021/jz300967q
Mirsaleh-Kohan, Nasrin, et al. "Single-Molecule Surface-Enhanced Raman Scattering: Can STEM/EELS Image Electromagnetic Hot Spots?." The journal of physical chemistry letters vol. 3,16 (2012): 2303-9. doi: https://doi.org/10.1021/jz300967q
Mirsaleh-Kohan N, Iberi V, Simmons PD, Bigelow NW, Vaschillo A, Rowland MM, Best MD, Pennycook SJ, Masiello DJ, Guiton BS, Camden JP. Single-Molecule Surface-Enhanced Raman Scattering: Can STEM/EELS Image Electromagnetic Hot Spots?. J Phys Chem Lett. 2012 Aug 16;3(16):2303-9. doi: 10.1021/jz300967q. Epub 2012 Aug 07. PMID: 26295787.
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Percutaneous native renal biopsy adequacy: a successful interdepartmental quality improvement activity.

Canadian journal of kidney health and disease

Geldenhuys L, Nicholson P, Sinha N, Dini A, Doucette S, Alfaadhel T, Keough V, West M.
PMID: 27408754
Can J Kidney Health Dis. 2015 Mar 13;2:8. doi: 10.1186/s40697-015-0043-z. eCollection 2015.

BACKGROUND: An adequate renal biopsy is essential for diagnosis and treatment of medical renal disease.OBJECTIVE: We evaluated two initiatives to improve adequacy of renal biopsy samples at our centre.DESIGN: Retrospective determination of renal biopsy adequacy.SETTING: Queen Elizabeth II Health...

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Geldenhuys L, Nicholson P, Sinha N, et al. Percutaneous native renal biopsy adequacy: a successful interdepartmental quality improvement activity. Can J Kidney Health Dis. 2015;2:8doi: 10.1186/s40697-015-0043-z.
Geldenhuys, L., Nicholson, P., Sinha, N., Dini, A., Doucette, S., Alfaadhel, T., Keough, V., & West, M. (2015). Percutaneous native renal biopsy adequacy: a successful interdepartmental quality improvement activity. Canadian journal of kidney health and disease, 28. https://doi.org/10.1186/s40697-015-0043-z
Geldenhuys, Laurette, et al. "Percutaneous native renal biopsy adequacy: a successful interdepartmental quality improvement activity." Canadian journal of kidney health and disease vol. 2 (2015): 8. doi: https://doi.org/10.1186/s40697-015-0043-z
Geldenhuys L, Nicholson P, Sinha N, Dini A, Doucette S, Alfaadhel T, Keough V, West M. Percutaneous native renal biopsy adequacy: a successful interdepartmental quality improvement activity. Can J Kidney Health Dis. 2015 Mar 13;2:8. doi: 10.1186/s40697-015-0043-z. eCollection 2015. PMID: 27408754; PMCID: PMC4940921.
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Data Quality Monitoring in Clinical Trials: Has It Been Worth It? An Evaluation and Prediction of the Future by All Stakeholders.

Innovations in clinical neuroscience

, Daniel D, Kalali A, West M, Walling D, Hilt D, Engelhardt N, Alphs L, Loebel A, Vanover K, Atkinson S, Opler M, Sachs G, Nations K, Brady C.
PMID: 27413584
Innov Clin Neurosci. 2016 Feb 01;13(1):27-33. eCollection 2016.

This paper summarizes the results of the CNS Summit Data Quality Monitoring Workgroup analysis of current data quality monitoring techniques used in central nervous system (CNS) clinical trials. Based on audience polls conducted at the CNS Summit 2014, the...

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, Daniel D, Kalali A, et al. Data Quality Monitoring in Clinical Trials: Has It Been Worth It? An Evaluation and Prediction of the Future by All Stakeholders. Innov Clin Neurosci. 2016;13(1):27-33
, Daniel, D., Kalali, A., West, M., Walling, D., Hilt, D., Engelhardt, N., Alphs, L., Loebel, A., Vanover, K., Atkinson, S., Opler, M., Sachs, G., Nations, K., & Brady, C. (2016). Data Quality Monitoring in Clinical Trials: Has It Been Worth It? An Evaluation and Prediction of the Future by All Stakeholders. Innovations in clinical neuroscience, 13(1), 27-33.
, et al. "Data Quality Monitoring in Clinical Trials: Has It Been Worth It? An Evaluation and Prediction of the Future by All Stakeholders." Innovations in clinical neuroscience vol. 13,1 (2016): 27-33.
, Daniel D, Kalali A, West M, Walling D, Hilt D, Engelhardt N, Alphs L, Loebel A, Vanover K, Atkinson S, Opler M, Sachs G, Nations K, Brady C. Data Quality Monitoring in Clinical Trials: Has It Been Worth It? An Evaluation and Prediction of the Future by All Stakeholders. Innov Clin Neurosci. 2016 Feb 01;13(1):27-33. eCollection 2016. PMID: 27413584; PMCID: PMC4896826.
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Vertical saccade palsy: a presenting sign of Niemann-Pick type IIS.

European journal of neurology

Shawkat FS, Carr L, West P, Taylor DS, Surtees R, Harris CM.
PMID: 24283435
Eur J Neurol. 1994 Sep;1(1):93-5. doi: 10.1111/j.1468-1331.1994.tb00056.x.

An 8 year old sister of a patient undergoing investigations for Niemann-Pick type IIS was observed to have mild difficulties in making downward saccades. She had no other symptoms apart from longstanding mild learning difficulties. Detailed eye movement assessment,...

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Shawkat FS, Carr L, West P, et al. Vertical saccade palsy: a presenting sign of Niemann-Pick type IIS. Eur J Neurol. 1994;1(1):93-5doi: 10.1111/j.1468-1331.1994.tb00056.x.
Shawkat, F. S., Carr, L., West, P., Taylor, D. S., Surtees, R., & Harris, C. M. (1994). Vertical saccade palsy: a presenting sign of Niemann-Pick type IIS. European journal of neurology, 1(1), 93-5. https://doi.org/10.1111/j.1468-1331.1994.tb00056.x
Shawkat, F S, et al. "Vertical saccade palsy: a presenting sign of Niemann-Pick type IIS." European journal of neurology vol. 1,1 (1994): 93-5. doi: https://doi.org/10.1111/j.1468-1331.1994.tb00056.x
Shawkat FS, Carr L, West P, Taylor DS, Surtees R, Harris CM. Vertical saccade palsy: a presenting sign of Niemann-Pick type IIS. Eur J Neurol. 1994 Sep;1(1):93-5. doi: 10.1111/j.1468-1331.1994.tb00056.x. PMID: 24283435.
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Pediatric traumatic brain injuries treated with decompressive craniectomy.

Surgical neurology international

Patel N, West M, Wurster J, Tillman C.
PMID: 24232244
Surg Neurol Int. 2013 Sep 27;4:128. doi: 10.4103/2152-7806.119055. eCollection 2013.

BACKGROUND: Traumatic brain injury (TBI) occurs in an estimated 80% of all pediatric trauma patients and is the leading cause of death and disability in the pediatric population. Decompressive craniectomy is a procedure used to decrease intracranial pressure by...

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Patel N, West M, Wurster J, et al. Pediatric traumatic brain injuries treated with decompressive craniectomy. Surg Neurol Int. 2013;4:128doi: 10.4103/2152-7806.119055.
Patel, N., West, M., Wurster, J., & Tillman, C. (2013). Pediatric traumatic brain injuries treated with decompressive craniectomy. Surgical neurology international, 4128. https://doi.org/10.4103/2152-7806.119055
Patel, Neil, et al. "Pediatric traumatic brain injuries treated with decompressive craniectomy." Surgical neurology international vol. 4 (2013): 128. doi: https://doi.org/10.4103/2152-7806.119055
Patel N, West M, Wurster J, Tillman C. Pediatric traumatic brain injuries treated with decompressive craniectomy. Surg Neurol Int. 2013 Sep 27;4:128. doi: 10.4103/2152-7806.119055. eCollection 2013. PMID: 24232244; PMCID: PMC3815000.
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High-accuracy X-ray absorption spectra from mM solutions of nickel (II) complexes with multiple solutions using transmission XAS.

Journal of synchrotron radiation

Chantler CT, Islam MT, Best SP, Tantau LJ, Tran CQ, Cheah MH, Payne AT.
PMID: 26134805
J Synchrotron Radiat. 2015 Jul;22(4):1008-21. doi: 10.1107/S1600577515006190. Epub 2015 Jun 19.

A new approach is introduced for determining X-ray absorption spectroscopy (XAS) spectra on absolute and relative scales using multiple solutions with different concentrations by the characterization and correction of experimental systematics. This hybrid technique is a development of standard...

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Chantler CT, Islam MT, Best SP, et al. High-accuracy X-ray absorption spectra from mM solutions of nickel (II) complexes with multiple solutions using transmission XAS. J Synchrotron Radiat. 2015;22(4):1008-21doi: 10.1107/S1600577515006190.
Chantler, C. T., Islam, M. T., Best, S. P., Tantau, L. J., Tran, C. Q., Cheah, M. H., & Payne, A. T. (2015). High-accuracy X-ray absorption spectra from mM solutions of nickel (II) complexes with multiple solutions using transmission XAS. Journal of synchrotron radiation, 22(4), 1008-21. https://doi.org/10.1107/S1600577515006190
Chantler, Christopher T, et al. "High-accuracy X-ray absorption spectra from mM solutions of nickel (II) complexes with multiple solutions using transmission XAS." Journal of synchrotron radiation vol. 22,4 (2015): 1008-21. doi: https://doi.org/10.1107/S1600577515006190
Chantler CT, Islam MT, Best SP, Tantau LJ, Tran CQ, Cheah MH, Payne AT. High-accuracy X-ray absorption spectra from mM solutions of nickel (II) complexes with multiple solutions using transmission XAS. J Synchrotron Radiat. 2015 Jul;22(4):1008-21. doi: 10.1107/S1600577515006190. Epub 2015 Jun 19. PMID: 26134805.
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Showing 13 to 24 of 551 entries