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Magnetic sequencing.

Nature methods

Linnarsson S.
PMID: 22453909
Nat Methods. 2012 Mar 27;9(4):339, 341. doi: 10.1038/nmeth.1934.

No abstract available.

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Linnarsson S. Magnetic sequencing. Nat Methods. 2012;9(4):339, 341doi: 10.1038/nmeth.1934.
Linnarsson, S. (2012). Magnetic sequencing. Nature methods, 9(4), 339, 341. https://doi.org/10.1038/nmeth.1934
Linnarsson, Sten. "Magnetic sequencing." Nature methods vol. 9,4 (2012): 339, 341. doi: https://doi.org/10.1038/nmeth.1934
Linnarsson S. Magnetic sequencing. Nat Methods. 2012 Mar 27;9(4):339, 341. doi: 10.1038/nmeth.1934. PMID: 22453909.
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Pathway and network analysis with high-density allelic association data.

Methods in molecular biology (Clifton, N.J.)

Torkamani A, Schork NJ.
PMID: 19597792
Methods Mol Biol. 2009;563:289-301. doi: 10.1007/978-1-60761-175-2_16.

Network and pathway analysis tools are traditionally used to interrogate gene expression data in order to understand the biological processes affected by a particular manipulation or disease/condition of interest. A systems-level understanding of the biological processes affected in particular...

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Torkamani A, Schork NJ. Pathway and network analysis with high-density allelic association data. Methods Mol Biol. 2009;563:289-301doi: 10.1007/978-1-60761-175-2_16.
Torkamani, A., & Schork, N. J. (2009). Pathway and network analysis with high-density allelic association data. Methods in molecular biology (Clifton, N.J.), 563289-301. https://doi.org/10.1007/978-1-60761-175-2_16
Torkamani, Ali, and Schork, Nicholas J. "Pathway and network analysis with high-density allelic association data." Methods in molecular biology (Clifton, N.J.) vol. 563 (2009): 289-301. doi: https://doi.org/10.1007/978-1-60761-175-2_16
Torkamani A, Schork NJ. Pathway and network analysis with high-density allelic association data. Methods Mol Biol. 2009;563:289-301. doi: 10.1007/978-1-60761-175-2_16. PMID: 19597792.
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Design of large-insert jumping libraries for structural variant detection using Illumina sequencing.

Current protocols in human genetics

Hanscom C, Talkowski M.
PMID: 24789519
Curr Protoc Hum Genet. 2014 Jan 23;80:7.22.1-9. doi: 10.1002/0471142905.hg0722s80.

Next-generation sequencing is an important and efficient tool for the identification of structural variation, particularly balanced chromosomal rearrangements, because such events are not routinely detected by microarray and localization of altered regions by karyotype is imprecise. Indeed, the degree...

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Hanscom C, Talkowski M. Design of large-insert jumping libraries for structural variant detection using Illumina sequencing. Curr Protoc Hum Genet. 2014;80:7.22.1-9doi: 10.1002/0471142905.hg0722s80.
Hanscom, C., & Talkowski, M. (2014). Design of large-insert jumping libraries for structural variant detection using Illumina sequencing. Current protocols in human genetics, 807.22.1-9. https://doi.org/10.1002/0471142905.hg0722s80
Hanscom, C, and Talkowski, M. "Design of large-insert jumping libraries for structural variant detection using Illumina sequencing." Current protocols in human genetics vol. 80 (2014): 7.22.1-9. doi: https://doi.org/10.1002/0471142905.hg0722s80
Hanscom C, Talkowski M. Design of large-insert jumping libraries for structural variant detection using Illumina sequencing. Curr Protoc Hum Genet. 2014 Jan 23;80:7.22.1-9. doi: 10.1002/0471142905.hg0722s80. PMID: 24789519; PMCID: PMC4009510.
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Hierarchical modeling for synthetic biology.

ACS synthetic biology

Chandran D, Sauro HM.
PMID: 23651289
ACS Synth Biol. 2012 Aug 17;1(8):353-64. doi: 10.1021/sb300033q. Epub 2012 Aug 10.

One of the characteristics of synthetic biology is that it often combines mathematical modeling with experimental work. The link between modeling and experiments is carried out by human researchers who have a conceptual understanding of the underlying biological system....

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Chandran D, Sauro HM. Hierarchical modeling for synthetic biology. ACS Synth Biol. 2012;1(8):353-64doi: 10.1021/sb300033q.
Chandran, D., & Sauro, H. M. (2012). Hierarchical modeling for synthetic biology. ACS synthetic biology, 1(8), 353-64. https://doi.org/10.1021/sb300033q
Chandran, Deepak, and Sauro, Herbert M. "Hierarchical modeling for synthetic biology." ACS synthetic biology vol. 1,8 (2012): 353-64. doi: https://doi.org/10.1021/sb300033q
Chandran D, Sauro HM. Hierarchical modeling for synthetic biology. ACS Synth Biol. 2012 Aug 17;1(8):353-64. doi: 10.1021/sb300033q. Epub 2012 Aug 10. PMID: 23651289.
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The science, applications, and ethical concerns surrounding low copy number DNA analysis.

Genetic testing and molecular biomarkers

Schulz R, Terry SF.
PMID: 26053787
Genet Test Mol Biomarkers. 2015 Jun;19(6):281-2. doi: 10.1089/gtmb.2015.29000.rjs.

No abstract available.

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Schulz R, Terry SF. The science, applications, and ethical concerns surrounding low copy number DNA analysis. Genet Test Mol Biomarkers. 2015;19(6):281-2doi: 10.1089/gtmb.2015.29000.rjs.
Schulz, R., & Terry, S. F. (2015). The science, applications, and ethical concerns surrounding low copy number DNA analysis. Genetic testing and molecular biomarkers, 19(6), 281-2. https://doi.org/10.1089/gtmb.2015.29000.rjs
Schulz, Rebecca, and Terry, Sharon F. "The science, applications, and ethical concerns surrounding low copy number DNA analysis." Genetic testing and molecular biomarkers vol. 19,6 (2015): 281-2. doi: https://doi.org/10.1089/gtmb.2015.29000.rjs
Schulz R, Terry SF. The science, applications, and ethical concerns surrounding low copy number DNA analysis. Genet Test Mol Biomarkers. 2015 Jun;19(6):281-2. doi: 10.1089/gtmb.2015.29000.rjs. PMID: 26053787.
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A response to a response to Meakin and Jamieson DNA transfer: Review and implications for casework.

Forensic science international. Genetics

Meakin GE, Jamieson A.
PMID: 26925760
Forensic Sci Int Genet. 2016 May;22:e5-e6. doi: 10.1016/j.fsigen.2016.02.010. Epub 2016 Feb 22.

No abstract available.

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Meakin GE, Jamieson A. A response to a response to Meakin and Jamieson DNA transfer: Review and implications for casework. Forensic Sci Int Genet. 2016;22:e5-e6doi: 10.1016/j.fsigen.2016.02.010.
Meakin, G. E., & Jamieson, A. (2016). A response to a response to Meakin and Jamieson DNA transfer: Review and implications for casework. Forensic science international. Genetics, 22e5-e6. https://doi.org/10.1016/j.fsigen.2016.02.010
Meakin, Georgina E, and Jamieson, Allan. "A response to a response to Meakin and Jamieson DNA transfer: Review and implications for casework." Forensic science international. Genetics vol. 22 (2016): e5-e6. doi: https://doi.org/10.1016/j.fsigen.2016.02.010
Meakin GE, Jamieson A. A response to a response to Meakin and Jamieson DNA transfer: Review and implications for casework. Forensic Sci Int Genet. 2016 May;22:e5-e6. doi: 10.1016/j.fsigen.2016.02.010. Epub 2016 Feb 22. PMID: 26925760.
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Environmental versus extra-organismal DNA.

Molecular ecology

Pawlowski J, Apothéloz-Perret-Gentil L, Altermatt F.
PMID: 34498334
Mol Ecol. 2021 Oct;30(19):4606-4607. doi: 10.1111/mec.16144. Epub 2021 Sep 09.

No abstract available.

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Pawlowski J, Apothéloz-Perret-Gentil L, Altermatt F. Environmental versus extra-organismal DNA. Mol Ecol. 2021;30(19):4606-4607doi: 10.1111/mec.16144.
Pawlowski, J., Apothéloz-Perret-Gentil, L., & Altermatt, F. (2021). Environmental versus extra-organismal DNA. Molecular ecology, 30(19), 4606-4607. https://doi.org/10.1111/mec.16144
Pawlowski, Jan, et al. "Environmental versus extra-organismal DNA." Molecular ecology vol. 30,19 (2021): 4606-4607. doi: https://doi.org/10.1111/mec.16144
Pawlowski J, Apothéloz-Perret-Gentil L, Altermatt F. Environmental versus extra-organismal DNA. Mol Ecol. 2021 Oct;30(19):4606-4607. doi: 10.1111/mec.16144. Epub 2021 Sep 09. PMID: 34498334.
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Pac-Man like DNA cut-and-paste tool allows larger gene edits.

Communications biology

Akhtar A.
PMID: 33219320
Commun Biol. 2020 Nov 20;3(1):709. doi: 10.1038/s42003-020-01446-7.

No abstract available.

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Akhtar A. Pac-Man like DNA cut-and-paste tool allows larger gene edits. Commun Biol. 2020;3(1):709doi: 10.1038/s42003-020-01446-7.
Akhtar, A. (2020). Pac-Man like DNA cut-and-paste tool allows larger gene edits. Communications biology, 3(1), 709. https://doi.org/10.1038/s42003-020-01446-7
Akhtar, Anam. "Pac-Man like DNA cut-and-paste tool allows larger gene edits." Communications biology vol. 3,1 (2020): 709. doi: https://doi.org/10.1038/s42003-020-01446-7
Akhtar A. Pac-Man like DNA cut-and-paste tool allows larger gene edits. Commun Biol. 2020 Nov 20;3(1):709. doi: 10.1038/s42003-020-01446-7. PMID: 33219320; PMCID: PMC7679406.
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DNA barcodes using a double nanopore system.

Scientific reports

Seth S, Bhattacharya A.
PMID: 33963199
Sci Rep. 2021 May 07;11(1):9799. doi: 10.1038/s41598-021-89017-6.

The potential of a double nanopore system to determine DNA barcodes has been demonstrated experimentally. By carrying out Brownian dynamics simulation on a coarse-grained model DNA with protein tag (barcodes) at known locations along the chain backbone, we demonstrate...

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Seth S, Bhattacharya A. DNA barcodes using a double nanopore system. Sci Rep. 2021;11(1):9799doi: 10.1038/s41598-021-89017-6.
Seth, S., & Bhattacharya, A. (2021). DNA barcodes using a double nanopore system. Scientific reports, 11(1), 9799. https://doi.org/10.1038/s41598-021-89017-6
Seth, Swarnadeep, and Bhattacharya, Aniket. "DNA barcodes using a double nanopore system." Scientific reports vol. 11,1 (2021): 9799. doi: https://doi.org/10.1038/s41598-021-89017-6
Seth S, Bhattacharya A. DNA barcodes using a double nanopore system. Sci Rep. 2021 May 07;11(1):9799. doi: 10.1038/s41598-021-89017-6. PMID: 33963199; PMCID: PMC8105412.
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ASTE1 cutting to block DNA end resection.

Nature cell biology

He YJ, Chowdhury D.
PMID: 34354234
Nat Cell Biol. 2021 Aug;23(8):818-819. doi: 10.1038/s41556-021-00731-9.

No abstract available.

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He YJ, Chowdhury D. ASTE1 cutting to block DNA end resection. Nat Cell Biol. 2021;23(8):818-819doi: 10.1038/s41556-021-00731-9.
He, Y. J., & Chowdhury, D. (2021). ASTE1 cutting to block DNA end resection. Nature cell biology, 23(8), 818-819. https://doi.org/10.1038/s41556-021-00731-9
He, Yizhou Joseph, and Chowdhury, Dipanjan. "ASTE1 cutting to block DNA end resection." Nature cell biology vol. 23,8 (2021): 818-819. doi: https://doi.org/10.1038/s41556-021-00731-9
He YJ, Chowdhury D. ASTE1 cutting to block DNA end resection. Nat Cell Biol. 2021 Aug;23(8):818-819. doi: 10.1038/s41556-021-00731-9. PMID: 34354234.
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Model and modelers provide an insight into pairing of homologous DNA duplexes.

Proceedings of the National Academy of Sciences of the United States of America

Catcheside DEA.
PMID: 34544880
Proc Natl Acad Sci U S A. 2021 Sep 28;118(39). doi: 10.1073/pnas.2114127118.

No abstract available.

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Catcheside DEA. Model and modelers provide an insight into pairing of homologous DNA duplexes. Proc Natl Acad Sci U S A. 2021;118(39)doi: 10.1073/pnas.2114127118.
Catcheside, D. E. A. (2021). Model and modelers provide an insight into pairing of homologous DNA duplexes. Proceedings of the National Academy of Sciences of the United States of America, 118(39), . https://doi.org/10.1073/pnas.2114127118
Catcheside, David E A. "Model and modelers provide an insight into pairing of homologous DNA duplexes." Proceedings of the National Academy of Sciences of the United States of America vol. 118,39 (2021). doi: https://doi.org/10.1073/pnas.2114127118
Catcheside DEA. Model and modelers provide an insight into pairing of homologous DNA duplexes. Proc Natl Acad Sci U S A. 2021 Sep 28;118(39). doi: 10.1073/pnas.2114127118. PMID: 34544880; PMCID: PMC8488629.
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The role of extracellular DNA (exDNA) in cellular processes.

Cancer biology & therapy

Fernández-Domínguez IJ, Manzo-Merino J, Taja-Chayeb L, Dueñas-González A, Pérez-Cárdenas E, Trejo-Becerril C.
PMID: 33858306
Cancer Biol Ther. 2021 Apr 03;22(4):267-278. doi: 10.1080/15384047.2021.1890319. Epub 2021 Apr 16.

Nowadays, extracellular DNA or circulating cell-free DNA is considered to be a molecule with clinical applications (diagnosis, prognosis, monitoring of treatment responses, or patient follow-up) in diverse pathologies, especially in cancer. Nevertheless, because of its molecular characteristics, it can...

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Fernández-Domínguez IJ, Manzo-Merino J, Taja-Chayeb L, et al. The role of extracellular DNA (exDNA) in cellular processes. Cancer Biol Ther. 2021;22(4):267-278doi: 10.1080/15384047.2021.1890319.
Fernández-Domínguez, I. J., Manzo-Merino, J., Taja-Chayeb, L., Dueñas-González, A., Pérez-Cárdenas, E., & Trejo-Becerril, C. (2021). The role of extracellular DNA (exDNA) in cellular processes. Cancer biology & therapy, 22(4), 267-278. https://doi.org/10.1080/15384047.2021.1890319
Fernández-Domínguez, Ileana J, et al. "The role of extracellular DNA (exDNA) in cellular processes." Cancer biology & therapy vol. 22,4 (2021): 267-278. doi: https://doi.org/10.1080/15384047.2021.1890319
Fernández-Domínguez IJ, Manzo-Merino J, Taja-Chayeb L, Dueñas-González A, Pérez-Cárdenas E, Trejo-Becerril C. The role of extracellular DNA (exDNA) in cellular processes. Cancer Biol Ther. 2021 Apr 03;22(4):267-278. doi: 10.1080/15384047.2021.1890319. Epub 2021 Apr 16. PMID: 33858306; PMCID: PMC8183512.
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Showing 25 to 36 of 106 entries