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Showing 13 to 24 of 32 entries
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Crystal Structure of the Pneumococcal Vancomycin-Resistance Response Regulator DNA-Binding Domain.

Molecules and cells

Park SS, Lee S, Rhee DK.
PMID: 33795535
Mol Cells. 2021 Mar 31;44(3):179-185. doi: 10.14348/molcells.2021.2235.

Vancomycin response regulator (VncR) is a pneumococcal response regulator of the VncRS two-component signal transduction system (TCS) of Streptococcus pneumoniae. VncRS regulates bacterial autolysis and vancomycin resistance. VncR contains two different functional domains, the N-terminal receiver domain and C-terminal...

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Park SS, Lee S, Rhee DK. Crystal Structure of the Pneumococcal Vancomycin-Resistance Response Regulator DNA-Binding Domain. Mol Cells. 2021;44(3):179-185doi: 10.14348/molcells.2021.2235.
Park, S. S., Lee, S., & Rhee, D. K. (2021). Crystal Structure of the Pneumococcal Vancomycin-Resistance Response Regulator DNA-Binding Domain. Molecules and cells, 44(3), 179-185. https://doi.org/10.14348/molcells.2021.2235
Park, Sang-Sang, et al. "Crystal Structure of the Pneumococcal Vancomycin-Resistance Response Regulator DNA-Binding Domain." Molecules and cells vol. 44,3 (2021): 179-185. doi: https://doi.org/10.14348/molcells.2021.2235
Park SS, Lee S, Rhee DK. Crystal Structure of the Pneumococcal Vancomycin-Resistance Response Regulator DNA-Binding Domain. Mol Cells. 2021 Mar 31;44(3):179-185. doi: 10.14348/molcells.2021.2235. PMID: 33795535; PMCID: PMC8019601.
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The Feulgen-deoxyribonucleic acid absorption curve in normal and tumorous tissues.

The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society

KASTEN FH.
PMID: 13463310
J Histochem Cytochem. 1957 Jul;5(4):398-402. doi: 10.1177/5.4.398.

No abstract available.

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KASTEN FH. The Feulgen-deoxyribonucleic acid absorption curve in normal and tumorous tissues. J Histochem Cytochem. 1957;5(4):398-402doi: 10.1177/5.4.398.
KASTEN, F. H. (1957). The Feulgen-deoxyribonucleic acid absorption curve in normal and tumorous tissues. The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, 5(4), 398-402. https://doi.org/10.1177/5.4.398
KASTEN, F H. "The Feulgen-deoxyribonucleic acid absorption curve in normal and tumorous tissues." The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society vol. 5,4 (1957): 398-402. doi: https://doi.org/10.1177/5.4.398
KASTEN FH. The Feulgen-deoxyribonucleic acid absorption curve in normal and tumorous tissues. J Histochem Cytochem. 1957 Jul;5(4):398-402. doi: 10.1177/5.4.398. PMID: 13463310.
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Programming Chemical Reaction Networks Using Intramolecular Conformational Motions of DNA.

ACS nano

Lai W, Ren L, Tang Q, Qu X, Li J, Wang L, Li L, Fan C, Pei H.
PMID: 29906089
ACS Nano. 2018 Jul 24;12(7):7093-7099. doi: 10.1021/acsnano.8b02864. Epub 2018 Jun 22.

The programmable regulation of chemical reaction networks (CRNs) represents a major challenge toward the development of complex molecular devices performing sophisticated motions and functions. Nevertheless, regulation of artificial CRNs is generally energy- and time-intensive as compared to natural regulation....

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Lai W, Ren L, Tang Q, et al. Programming Chemical Reaction Networks Using Intramolecular Conformational Motions of DNA. ACS Nano. 2018;12(7):7093-7099doi: 10.1021/acsnano.8b02864.
Lai, W., Ren, L., Tang, Q., Qu, X., Li, J., Wang, L., Li, L., Fan, C., & Pei, H. (2018). Programming Chemical Reaction Networks Using Intramolecular Conformational Motions of DNA. ACS nano, 12(7), 7093-7099. https://doi.org/10.1021/acsnano.8b02864
Lai, Wei, et al. "Programming Chemical Reaction Networks Using Intramolecular Conformational Motions of DNA." ACS nano vol. 12,7 (2018): 7093-7099. doi: https://doi.org/10.1021/acsnano.8b02864
Lai W, Ren L, Tang Q, Qu X, Li J, Wang L, Li L, Fan C, Pei H. Programming Chemical Reaction Networks Using Intramolecular Conformational Motions of DNA. ACS Nano. 2018 Jul 24;12(7):7093-7099. doi: 10.1021/acsnano.8b02864. Epub 2018 Jun 22. PMID: 29906089.
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Barcoding Biological Reactions with DNA-Functionalized Vesicles.

Angewandte Chemie (International ed. in English)

Peruzzi JA, Jacobs ML, Vu TQ, Wang KS, Kamat NP.
PMID: 31596992
Angew Chem Int Ed Engl. 2019 Dec 16;58(51):18683-18690. doi: 10.1002/anie.201911544. Epub 2019 Oct 31.

Targeted vesicle fusion is a promising approach to selectively control interactions between vesicle compartments and would enable the initiation of biological reactions in complex aqueous environments. Here, we explore how two features of vesicle membranes, DNA tethers and phase-segregated...

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Peruzzi JA, Jacobs ML, Vu TQ, et al. Barcoding Biological Reactions with DNA-Functionalized Vesicles. Angew Chem Int Ed Engl. 2019;58(51):18683-18690doi: 10.1002/anie.201911544.
Peruzzi, J. A., Jacobs, M. L., Vu, T. Q., Wang, K. S., & Kamat, N. P. (2019). Barcoding Biological Reactions with DNA-Functionalized Vesicles. Angewandte Chemie (International ed. in English), 58(51), 18683-18690. https://doi.org/10.1002/anie.201911544
Peruzzi, Justin A, et al. "Barcoding Biological Reactions with DNA-Functionalized Vesicles." Angewandte Chemie (International ed. in English) vol. 58,51 (2019): 18683-18690. doi: https://doi.org/10.1002/anie.201911544
Peruzzi JA, Jacobs ML, Vu TQ, Wang KS, Kamat NP. Barcoding Biological Reactions with DNA-Functionalized Vesicles. Angew Chem Int Ed Engl. 2019 Dec 16;58(51):18683-18690. doi: 10.1002/anie.201911544. Epub 2019 Oct 31. PMID: 31596992; PMCID: PMC6901749.
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SELEX-based DNA Aptamer Selection: A Perspective from the Advancement of Separation Techniques.

Analytical sciences : the international journal of the Japan Society for Analytical Chemistry

Saito S.
PMID: 33132238
Anal Sci. 2021 Jan 10;37(1):17-26. doi: 10.2116/analsci.20SAR18. Epub 2020 Oct 30.

DNA aptamers, which are short, single-stranded DNA sequences that selectively bind to target substances (proteins, cells, small molecules, metal ions), can be acquired by means of the systematic evolution of ligands by exponential enrichment (SELEX) methodology. In the SELEX...

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Saito S. SELEX-based DNA Aptamer Selection: A Perspective from the Advancement of Separation Techniques. Anal Sci. 2020;37(1):17-26doi: 10.2116/analsci.20SAR18.
Saito, S. (2021). SELEX-based DNA Aptamer Selection: A Perspective from the Advancement of Separation Techniques. Analytical sciences : the international journal of the Japan Society for Analytical Chemistry, 37(1), 17-26. https://doi.org/10.2116/analsci.20SAR18
Saito, Shingo. "SELEX-based DNA Aptamer Selection: A Perspective from the Advancement of Separation Techniques." Analytical sciences : the international journal of the Japan Society for Analytical Chemistry vol. 37,1 (2021): 17-26. doi: https://doi.org/10.2116/analsci.20SAR18
Saito S. SELEX-based DNA Aptamer Selection: A Perspective from the Advancement of Separation Techniques. Anal Sci. 2021 Jan 10;37(1):17-26. doi: 10.2116/analsci.20SAR18. Epub 2020 Oct 30. PMID: 33132238.
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Enzymatic synthesis of deoxyribonucleic acid. II. General properties of the reaction.

The Journal of biological chemistry

BESSMAN MJ, LEHMAN IR, SIMMS ES, KORNBERG A.
PMID: 13563463
J Biol Chem. 1958 Jul;233(1):171-7.

No abstract available.

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BESSMAN MJ, LEHMAN IR, SIMMS ES, et al. Enzymatic synthesis of deoxyribonucleic acid. II. General properties of the reaction. J Biol Chem. 1958;233(1):171-7
BESSMAN, M. J., LEHMAN, I. R., SIMMS, E. S., & KORNBERG, A. (1958). Enzymatic synthesis of deoxyribonucleic acid. II. General properties of the reaction. The Journal of biological chemistry, 233(1), 171-7.
BESSMAN, M J, et al. "Enzymatic synthesis of deoxyribonucleic acid. II. General properties of the reaction." The Journal of biological chemistry vol. 233,1 (1958): 171-7.
BESSMAN MJ, LEHMAN IR, SIMMS ES, KORNBERG A. Enzymatic synthesis of deoxyribonucleic acid. II. General properties of the reaction. J Biol Chem. 1958 Jul;233(1):171-7. PMID: 13563463.
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Chromatin immunoprecipitation assay.

BioTechniques

Das PM, Ramachandran K, vanWert J, Singal R.
PMID: 15597545
Biotechniques. 2004 Dec;37(6):961-9. doi: 10.2144/04376RV01.

Association between proteins and DNA is crucial for many vital cellular functions such as gene transcription, DNA replication and recombination, repair, segregation, chromosomal stability, cell cycle progression, and epigenetic silencing. It is important to know the genomic targets of...

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Das PM, Ramachandran K, vanWert J, et al. Chromatin immunoprecipitation assay. Biotechniques. 2004;37(6):961-9doi: 10.2144/04376RV01.
Das, P. M., Ramachandran, K., vanWert, J., & Singal, R. (2004). Chromatin immunoprecipitation assay. BioTechniques, 37(6), 961-9. https://doi.org/10.2144/04376RV01
Das, Partha M, et al. "Chromatin immunoprecipitation assay." BioTechniques vol. 37,6 (2004): 961-9. doi: https://doi.org/10.2144/04376RV01
Das PM, Ramachandran K, vanWert J, Singal R. Chromatin immunoprecipitation assay. Biotechniques. 2004 Dec;37(6):961-9. doi: 10.2144/04376RV01. PMID: 15597545.
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'Screw-cap' clamp loader proteins that thread.

Nature structural & molecular biology

Zhuang Z, Spiering MM, Berdis AJ, Trakselis MA, Benkovic SJ.
PMID: 15221017
Nat Struct Mol Biol. 2004 Jul;11(7):580-1. doi: 10.1038/nsmb0704-580.

No abstract available.

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Zhuang Z, Spiering MM, Berdis AJ, et al. 'Screw-cap' clamp loader proteins that thread. Nat Struct Mol Biol. 2004;11(7):580-1doi: 10.1038/nsmb0704-580.
Zhuang, Z., Spiering, M. M., Berdis, A. J., Trakselis, M. A., & Benkovic, S. J. (2004). 'Screw-cap' clamp loader proteins that thread. Nature structural & molecular biology, 11(7), 580-1. https://doi.org/10.1038/nsmb0704-580
Zhuang, Zhihao, et al. "'Screw-cap' clamp loader proteins that thread." Nature structural & molecular biology vol. 11,7 (2004): 580-1. doi: https://doi.org/10.1038/nsmb0704-580
Zhuang Z, Spiering MM, Berdis AJ, Trakselis MA, Benkovic SJ. 'Screw-cap' clamp loader proteins that thread. Nat Struct Mol Biol. 2004 Jul;11(7):580-1. doi: 10.1038/nsmb0704-580. PMID: 15221017.
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Probing the organization and dynamics of two DNA chains trapped in a nanofluidic cavity.

Soft matter

Capaldi X, Liu Z, Zhang Y, Zeng L, Reyes-Lamothe R, Reisner W.
PMID: 30187055
Soft Matter. 2018 Oct 31;14(42):8455-8465. doi: 10.1039/c8sm01444b.

Here we present a pneumatically-actuated nanofluidic platform that has the capability of dynamically controlling the confinement environment of macromolecules in solution. Using a principle familiar from classic devices based on soft-lithography, the system uses pneumatic pressure to deflect a...

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Capaldi X, Liu Z, Zhang Y, et al. Probing the organization and dynamics of two DNA chains trapped in a nanofluidic cavity. Soft Matter. 2018;14(42):8455-8465doi: 10.1039/c8sm01444b.
Capaldi, X., Liu, Z., Zhang, Y., Zeng, L., Reyes-Lamothe, R., & Reisner, W. (2018). Probing the organization and dynamics of two DNA chains trapped in a nanofluidic cavity. Soft matter, 14(42), 8455-8465. https://doi.org/10.1039/c8sm01444b
Capaldi, Xavier, et al. "Probing the organization and dynamics of two DNA chains trapped in a nanofluidic cavity." Soft matter vol. 14,42 (2018): 8455-8465. doi: https://doi.org/10.1039/c8sm01444b
Capaldi X, Liu Z, Zhang Y, Zeng L, Reyes-Lamothe R, Reisner W. Probing the organization and dynamics of two DNA chains trapped in a nanofluidic cavity. Soft Matter. 2018 Oct 31;14(42):8455-8465. doi: 10.1039/c8sm01444b. PMID: 30187055.
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Fluctuations in the DNA double helix: A critical review.

Physics of life reviews

Frank-Kamenetskii MD, Prakash S.
PMID: 24560595
Phys Life Rev. 2014 Jun;11(2):153-70. doi: 10.1016/j.plrev.2014.01.005. Epub 2014 Jan 13.

A critical overview of the extensive literature on fluctuations in the DNA double helix is presented. Both theory and experiment are comprehensively reviewed and analyzed. Fluctuations, which open up the DNA double helix making bases accessible for hydrogen exchange...

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Frank-Kamenetskii MD, Prakash S. Fluctuations in the DNA double helix: A critical review. Phys Life Rev. 2014;11(2):153-70doi: 10.1016/j.plrev.2014.01.005.
Frank-Kamenetskii, M. D., & Prakash, S. (2014). Fluctuations in the DNA double helix: A critical review. Physics of life reviews, 11(2), 153-70. https://doi.org/10.1016/j.plrev.2014.01.005
Frank-Kamenetskii, Maxim D, and Prakash, Shikha. "Fluctuations in the DNA double helix: A critical review." Physics of life reviews vol. 11,2 (2014): 153-70. doi: https://doi.org/10.1016/j.plrev.2014.01.005
Frank-Kamenetskii MD, Prakash S. Fluctuations in the DNA double helix: A critical review. Phys Life Rev. 2014 Jun;11(2):153-70. doi: 10.1016/j.plrev.2014.01.005. Epub 2014 Jan 13. PMID: 24560595.
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High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins.

Biopolymers

Chemla YR.
PMID: 27225537
Biopolymers. 2016 Oct;105(10):704-14. doi: 10.1002/bip.22880.

Optical tweezers have become a powerful tool to investigate nucleic-acid processing proteins at the single-molecule level. Recent advances in this technique have now enabled measurements resolving the smallest units of molecular motion, on the scale of a single base...

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Chemla YR. High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins. Biopolymers. 2016;105(10):704-14doi: 10.1002/bip.22880.
Chemla, Y. R. (2016). High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins. Biopolymers, 105(10), 704-14. https://doi.org/10.1002/bip.22880
Chemla, Yann R. "High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins." Biopolymers vol. 105,10 (2016): 704-14. doi: https://doi.org/10.1002/bip.22880
Chemla YR. High-resolution, hybrid optical trapping methods, and their application to nucleic acid processing proteins. Biopolymers. 2016 Oct;105(10):704-14. doi: 10.1002/bip.22880. PMID: 27225537.
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Search-and-destroy missions in DNA computing.

Analytical chemistry

[No authors listed]
PMID: 11028600
Anal Chem. 2000 Oct 01;72(19):629A. doi: 10.1021/ac0029408.

No abstract available.

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Search-and-destroy missions in DNA computing. Anal Chem. 2000;72(19):629Adoi: 10.1021/ac0029408.
(2000). Search-and-destroy missions in DNA computing. Analytical chemistry, 72(19), 629A. https://doi.org/10.1021/ac0029408
"Search-and-destroy missions in DNA computing." Analytical chemistry vol. 72,19 (2000): 629A. doi: https://doi.org/10.1021/ac0029408
Search-and-destroy missions in DNA computing. Anal Chem. 2000 Oct 01;72(19):629A. doi: 10.1021/ac0029408. PMID: 11028600.
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Showing 13 to 24 of 32 entries