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Towards a Digital Twin of the Earth System: Geo-Soft-CoRe, a Geoscientific Software & Code Repository

Cultural Transformation in the Geoscience Community AND Program Evaluation

Alcalde J, Baykiev E, DeFelipe I.
GSID: s68zly_Ad3oJ
I DeFelipe, J Alcalde, E Baykiev, I Bernal… - … in Earth Science, 2022 - frontiersin.org

The immense advances in computer power achieved in the last decades have had a significant impact in Earth science, providing valuable research outputs that allow the simulation of complex natural processes and systems, and generating improved forecasts. The development...

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DeFelipe, I., Alcalde, J., Baykiev, E., Bernal, I., Boonma, K., Carbonell, R., ... & Ventosa, S. (2022). Towards a Digital Twin of the Earth System: Geo-Soft-CoRe, a Geoscientific Software & Code Repository. Frontiers in Earth Science, 509.
DeFelipe, Irene, et al. "Towards a Digital Twin of the Earth System: Geo-Soft-CoRe, a Geoscientific Software & Code Repository." Frontiers in Earth Science (2022): 509.
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Artificial stone dust-induced functional and inflammatory abnormalities in exposed workers monitored quantitatively by biometrics.

ERJ open research

Ophir N, Shai AB, Alkalay Y, Israeli S, Korenstein R, Kramer MR, Fireman E.
PMID: 27730180
ERJ Open Res. 2016 Mar 17;2(1). doi: 10.1183/23120541.00086-2015. eCollection 2016 Jan.

The manufacture of kitchen and bath countertops in Israel is based mainly on artificial stone that contains 93% silica as natural quartz, and ∼3500 workers are involved in cutting and processing it. Artificial stone produces high concentrations of silica...

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Ophir N, Shai AB, Alkalay Y, et al. Artificial stone dust-induced functional and inflammatory abnormalities in exposed workers monitored quantitatively by biometrics. ERJ Open Res. 2016;2(1)doi: 10.1183/23120541.00086-2015.
Ophir, N., Shai, A. B., Alkalay, Y., Israeli, S., Korenstein, R., Kramer, M. R., & Fireman, E. (2016). Artificial stone dust-induced functional and inflammatory abnormalities in exposed workers monitored quantitatively by biometrics. ERJ open research, 2(1), . https://doi.org/10.1183/23120541.00086-2015
Ophir, Noa, et al. "Artificial stone dust-induced functional and inflammatory abnormalities in exposed workers monitored quantitatively by biometrics." ERJ open research vol. 2,1 (2016). doi: https://doi.org/10.1183/23120541.00086-2015
Ophir N, Shai AB, Alkalay Y, Israeli S, Korenstein R, Kramer MR, Fireman E. Artificial stone dust-induced functional and inflammatory abnormalities in exposed workers monitored quantitatively by biometrics. ERJ Open Res. 2016 Mar 17;2(1). doi: 10.1183/23120541.00086-2015. eCollection 2016 Jan. PMID: 27730180; PMCID: PMC5005163.
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Dynamic microtubule organization and mitochondrial transport are regulated by distinct Kinesin-1 pathways.

Biology open

Melkov A, Simchoni Y, Alcalay Y, Abdu U.
PMID: 26581590
Biol Open. 2015 Nov 18;4(12):1696-706. doi: 10.1242/bio.015206.

The microtubule (MT) plus-end motor kinesin heavy chain (Khc) is well known for its role in long distance cargo transport. Recent evidence showed that Khc is also required for the organization of the cellular MT network by mediating MT...

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Melkov A, Simchoni Y, Alcalay Y, et al. Dynamic microtubule organization and mitochondrial transport are regulated by distinct Kinesin-1 pathways. Biol Open. 2015;4(12):1696-706doi: 10.1242/bio.015206.
Melkov, A., Simchoni, Y., Alcalay, Y., & Abdu, U. (2015). Dynamic microtubule organization and mitochondrial transport are regulated by distinct Kinesin-1 pathways. Biology open, 4(12), 1696-706. https://doi.org/10.1242/bio.015206
Melkov, Anna, et al. "Dynamic microtubule organization and mitochondrial transport are regulated by distinct Kinesin-1 pathways." Biology open vol. 4,12 (2015): 1696-706. doi: https://doi.org/10.1242/bio.015206
Melkov A, Simchoni Y, Alcalay Y, Abdu U. Dynamic microtubule organization and mitochondrial transport are regulated by distinct Kinesin-1 pathways. Biol Open. 2015 Nov 18;4(12):1696-706. doi: 10.1242/bio.015206. PMID: 26581590; PMCID: PMC4736040.
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GBA p.T369M substitution in Parkinson disease: Polymorphism or association? A meta-analysis.

Neurology. Genetics

Mallett V, Ross JP, Alcalay RN, Ambalavanan A, Sidransky E, Dion PA, Rouleau GA, Gan-Or Z.
PMID: 27648471
Neurol Genet. 2016 Sep 08;2(5):e104. doi: 10.1212/NXG.0000000000000104. eCollection 2016 Oct.

The lysosomal enzyme glucocerebrosidase (GCase), encoded by GBA, has an important role in Parkinson disease (PD). GBA mutation carriers have an increased risk for PD, earlier age at onset, faster progression, and various nonmotor symptoms including cognitive decline, REM...

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Mallett V, Ross JP, Alcalay RN, et al. GBA p.T369M substitution in Parkinson disease: Polymorphism or association? A meta-analysis. Neurol Genet. 2016;2(5):e104doi: 10.1212/NXG.0000000000000104.
Mallett, V., Ross, J. P., Alcalay, R. N., Ambalavanan, A., Sidransky, E., Dion, P. A., Rouleau, G. A., & Gan-Or, Z. (2016). GBA p.T369M substitution in Parkinson disease: Polymorphism or association? A meta-analysis. Neurology. Genetics, 2(5), e104. https://doi.org/10.1212/NXG.0000000000000104
Mallett, Victoria, et al. "GBA p.T369M substitution in Parkinson disease: Polymorphism or association? A meta-analysis." Neurology. Genetics vol. 2,5 (2016): e104. doi: https://doi.org/10.1212/NXG.0000000000000104
Mallett V, Ross JP, Alcalay RN, Ambalavanan A, Sidransky E, Dion PA, Rouleau GA, Gan-Or Z. GBA p.T369M substitution in Parkinson disease: Polymorphism or association? A meta-analysis. Neurol Genet. 2016 Sep 08;2(5):e104. doi: 10.1212/NXG.0000000000000104. eCollection 2016 Oct. PMID: 27648471; PMCID: PMC5017539.
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Planar defect nucleation and annihilation mechanisms in nanocontact plasticity of metal surfaces.

Physical review letters

Alcalá J, Dalmau R, Franke O, Biener M, Biener J, Hodge A.
PMID: 23006383
Phys Rev Lett. 2012 Aug 17;109(7):075502. doi: 10.1103/PhysRevLett.109.075502. Epub 2012 Aug 16.

The incipient contact plasticity of metallic surfaces involves nucleation of crystalline defects. The present molecular dynamics simulations and nanoindentation experiments demonstrate that the current notion of nanocontact plasticity in fcc metals does not apply to high-strength bcc metals. We...

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Alcalá J, Dalmau R, Franke O, et al. Planar defect nucleation and annihilation mechanisms in nanocontact plasticity of metal surfaces. Phys Rev Lett. 2012;109(7):075502doi: 10.1103/PhysRevLett.109.075502.
Alcalá, J., Dalmau, R., Franke, O., Biener, M., Biener, J., & Hodge, A. (2012). Planar defect nucleation and annihilation mechanisms in nanocontact plasticity of metal surfaces. Physical review letters, 109(7), 075502. https://doi.org/10.1103/PhysRevLett.109.075502
Alcalá, Jorge, et al. "Planar defect nucleation and annihilation mechanisms in nanocontact plasticity of metal surfaces." Physical review letters vol. 109,7 (2012): 075502. doi: https://doi.org/10.1103/PhysRevLett.109.075502
Alcalá J, Dalmau R, Franke O, Biener M, Biener J, Hodge A. Planar defect nucleation and annihilation mechanisms in nanocontact plasticity of metal surfaces. Phys Rev Lett. 2012 Aug 17;109(7):075502. doi: 10.1103/PhysRevLett.109.075502. Epub 2012 Aug 16. PMID: 23006383.
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[Kidney tumors of malignant type: their prognostic variability].

Medicina espanola

ALCALA F.
PMID: 13119138
Med Esp. 1953 Aug;30(173):157-60.

No abstract available.

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ALCALA F. Tumores de riñón de tipo maligno: su variedad pronóstica. [Kidney tumors of malignant type: their prognostic variability]. Med Esp. 1953;30(173):157-60
ALCALA, F. (1953). Tumores de riñón de tipo maligno: su variedad pronóstica. [Kidney tumors of malignant type: their prognostic variability]. Medicina espanola, 30(173), 157-60.
ALCALA, F. "Tumores de riñón de tipo maligno: su variedad pronóstica." [Kidney tumors of malignant type: their prognostic variability]. Medicina espanola vol. 30,173 (1953): 157-60.
ALCALA F. Tumores de riñón de tipo maligno: su variedad pronóstica. [Kidney tumors of malignant type: their prognostic variability]. Med Esp. 1953 Aug;30(173):157-60. Undetermined. PMID: 13119138.
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Mechanical writing of ferroelectric polarization.

Science (New York, N.Y.)

Lu H, Bark CW, Esque de los Ojos D, Alcala J, Eom CB, Catalan G, Gruverman A.
PMID: 22491848
Science. 2012 Apr 06;336(6077):59-61. doi: 10.1126/science.1218693.

Ferroelectric materials are characterized by a permanent electric dipole that can be reversed through the application of an external voltage, but a strong intrinsic coupling between polarization and deformation also causes all ferroelectrics to be piezoelectric, leading to applications...

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Lu H, Bark CW, Esque de los Ojos D, et al. Mechanical writing of ferroelectric polarization. Science. 2012;336(6077):59-61doi: 10.1126/science.1218693.
Lu, H., Bark, C. W., Esque de los Ojos, D., Alcala, J., Eom, C. B., Catalan, G., & Gruverman, A. (2012). Mechanical writing of ferroelectric polarization. Science (New York, N.Y.), 336(6077), 59-61. https://doi.org/10.1126/science.1218693
Lu, H, et al. "Mechanical writing of ferroelectric polarization." Science (New York, N.Y.) vol. 336,6077 (2012): 59-61. doi: https://doi.org/10.1126/science.1218693
Lu H, Bark CW, Esque de los Ojos D, Alcala J, Eom CB, Catalan G, Gruverman A. Mechanical writing of ferroelectric polarization. Science. 2012 Apr 06;336(6077):59-61. doi: 10.1126/science.1218693. PMID: 22491848.
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Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups.

Blood cancer journal

Riva L, Ronchini C, Bodini M, Lo-Coco F, Lavorgna S, Ottone T, Martinelli G, Iacobucci I, Tarella C, Cignetti A, Volorio S, Bernard L, Russo A, Melloni GE, Luzi L, Alcalay M, Dellino GI, Pelicci PG.
PMID: 24658373
Blood Cancer J. 2014 Mar 21;4:e195. doi: 10.1038/bcj.2014.19.

No abstract available.

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Riva L, Ronchini C, Bodini M, et al. Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups. Blood Cancer J. 2014;4:e195doi: 10.1038/bcj.2014.19.
Riva, L., Ronchini, C., Bodini, M., Lo-Coco, F., Lavorgna, S., Ottone, T., Martinelli, G., Iacobucci, I., Tarella, C., Cignetti, A., Volorio, S., Bernard, L., Russo, A., Melloni, G. E., Luzi, L., Alcalay, M., Dellino, G. I., & Pelicci, P. G. (2014). Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups. Blood cancer journal, 4e195. https://doi.org/10.1038/bcj.2014.19
Riva, L, et al. "Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups." Blood cancer journal vol. 4 (2014): e195. doi: https://doi.org/10.1038/bcj.2014.19
Riva L, Ronchini C, Bodini M, Lo-Coco F, Lavorgna S, Ottone T, Martinelli G, Iacobucci I, Tarella C, Cignetti A, Volorio S, Bernard L, Russo A, Melloni GE, Luzi L, Alcalay M, Dellino GI, Pelicci PG. Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups. Blood Cancer J. 2014 Mar 21;4:e195. doi: 10.1038/bcj.2014.19. PMID: 24658373; PMCID: PMC3972704.
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Observation of Atomlike Nitrogen in Nitrogen-Implanted Solid C60.

Physical review letters

Alcala R, Almeida Murphy T, Höhne M, Pawlik T, Spaeth J, Weidinger A.
PMID: 10062984
Phys Rev Lett. 1996 Aug 05;77(6):1075-1078. doi: 10.1103/PhysRevLett.77.1075.

No abstract available.

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Alcala R, Almeida Murphy T, Höhne M, et al. Observation of Atomlike Nitrogen in Nitrogen-Implanted Solid C60. Phys Rev Lett. 1996;77(6):1075-1078doi: 10.1103/PhysRevLett.77.1075.
Alcala, R., Almeida Murphy T, Höhne, M., Pawlik, T., Spaeth, J., & Weidinger, A. (1996). Observation of Atomlike Nitrogen in Nitrogen-Implanted Solid C60. Physical review letters, 77(6), 1075-1078. https://doi.org/10.1103/PhysRevLett.77.1075
Alcala, et al. "Observation of Atomlike Nitrogen in Nitrogen-Implanted Solid C60." Physical review letters vol. 77,6 (1996): 1075-1078. doi: https://doi.org/10.1103/PhysRevLett.77.1075
Alcala R, Almeida Murphy T, Höhne M, Pawlik T, Spaeth J, Weidinger A. Observation of Atomlike Nitrogen in Nitrogen-Implanted Solid C60. Phys Rev Lett. 1996 Aug 05;77(6):1075-1078. doi: 10.1103/PhysRevLett.77.1075. PMID: 10062984.
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Understanding the molecular basis of acute myeloid leukemias: where are we now?.

International journal of hematologic oncology

Gruszka AM, Valli D, Alcalay M.
PMID: 30302223
Int J Hematol Oncol. 2017 Jun;6(2):43-53. doi: 10.2217/ijh-2017-0002. Epub 2017 Nov 17.

Although the treatment modalities for acute myeloid leukemia (AML) have not changed much over the past 40 years, distinct progress has been made in deciphering the basic biology underlying the pathogenesis of this group of hematological disorders. Studies show...

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Gruszka AM, Valli D, Alcalay M. Understanding the molecular basis of acute myeloid leukemias: where are we now?. Int J Hematol Oncol. 2017;6(2):43-53doi: 10.2217/ijh-2017-0002.
Gruszka, A. M., Valli, D., & Alcalay, M. (2017). Understanding the molecular basis of acute myeloid leukemias: where are we now?. International journal of hematologic oncology, 6(2), 43-53. https://doi.org/10.2217/ijh-2017-0002
Gruszka, Alicja M, et al. "Understanding the molecular basis of acute myeloid leukemias: where are we now?." International journal of hematologic oncology vol. 6,2 (2017): 43-53. doi: https://doi.org/10.2217/ijh-2017-0002
Gruszka AM, Valli D, Alcalay M. Understanding the molecular basis of acute myeloid leukemias: where are we now?. Int J Hematol Oncol. 2017 Jun;6(2):43-53. doi: 10.2217/ijh-2017-0002. Epub 2017 Nov 17. PMID: 30302223; PMCID: PMC6172002.
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Complete Genome Sequences of Three .

Genome announcements

Alkalay S, Sternberg S, Coppenhagen-Glazer S, Hazan R.
PMID: 29301897
Genome Announc. 2018 Jan 04;6(1). doi: 10.1128/genomeA.01164-17.

The new highly effective

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Alkalay S, Sternberg S, Coppenhagen-Glazer S, et al. Complete Genome Sequences of Three . Genome Announc. 2018;6(1)doi: 10.1128/genomeA.01164-17.
Alkalay, S., Sternberg, S., Coppenhagen-Glazer, S., & Hazan, R. (2018). Complete Genome Sequences of Three . Genome announcements, 6(1), . https://doi.org/10.1128/genomeA.01164-17
Alkalay, Sivan, et al. "Complete Genome Sequences of Three ." Genome announcements vol. 6,1 (2018). doi: https://doi.org/10.1128/genomeA.01164-17
Alkalay S, Sternberg S, Coppenhagen-Glazer S, Hazan R. Complete Genome Sequences of Three . Genome Announc. 2018 Jan 04;6(1). doi: 10.1128/genomeA.01164-17. PMID: 29301897; PMCID: PMC5754477.
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Cardiac tamponade and coronary artery pseudoaneurysm after brachial arterial embolectomy, possible role for an aberrant origin of the right coronary artery.

Journal of vascular surgery cases and innovative techniques

Stessman-Lande I, Salem R, Rubinstein C, Hiller N, Heyman SN, Alcalai R.
PMID: 29541695
J Vasc Surg Cases Innov Tech. 2018 Feb 13;4(1):27-30. doi: 10.1016/j.jvscit.2017.11.003. eCollection 2018 Mar.

A patient developed hemopericardium shortly after left brachial arterial embolectomy using an embolectomy catheter. Evaluation disclosed evolving pseudoaneurysm of the right coronary artery that was successfully managed by stenting. Misplacement of the embolectomy catheter within the coronary vessel was...

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Stessman-Lande I, Salem R, Rubinstein C, et al. Cardiac tamponade and coronary artery pseudoaneurysm after brachial arterial embolectomy, possible role for an aberrant origin of the right coronary artery. J Vasc Surg Cases Innov Tech. 2018;4(1):27-30doi: 10.1016/j.jvscit.2017.11.003.
Stessman-Lande, I., Salem, R., Rubinstein, C., Hiller, N., Heyman, S. N., & Alcalai, R. (2018). Cardiac tamponade and coronary artery pseudoaneurysm after brachial arterial embolectomy, possible role for an aberrant origin of the right coronary artery. Journal of vascular surgery cases and innovative techniques, 4(1), 27-30. https://doi.org/10.1016/j.jvscit.2017.11.003
Stessman-Lande, Irit, et al. "Cardiac tamponade and coronary artery pseudoaneurysm after brachial arterial embolectomy, possible role for an aberrant origin of the right coronary artery." Journal of vascular surgery cases and innovative techniques vol. 4,1 (2018): 27-30. doi: https://doi.org/10.1016/j.jvscit.2017.11.003
Stessman-Lande I, Salem R, Rubinstein C, Hiller N, Heyman SN, Alcalai R. Cardiac tamponade and coronary artery pseudoaneurysm after brachial arterial embolectomy, possible role for an aberrant origin of the right coronary artery. J Vasc Surg Cases Innov Tech. 2018 Feb 13;4(1):27-30. doi: 10.1016/j.jvscit.2017.11.003. eCollection 2018 Mar. PMID: 29541695; PMCID: PMC5849776.
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Showing 1 to 12 of 189 entries