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Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies.

mSystems

Ammer-Herrmenau C, Pfisterer N, van den Berg T, Gavrilova I, Amanzada A, Singh SK, Khalil A, Alili R, Belda E, Clement K, Abd El Wahed A, Gady EE, Haubrock M, Beißbarth T, Ellenrieder V, Neesse A.
PMID: 34427527
mSystems. 2021 Aug 31;6(4):e0075021. doi: 10.1128/mSystems.00750-21. Epub 2021 Aug 24.

The advent of high-throughput sequencing techniques has recently provided an astonishing insight into the composition and function of the human microbiome. Next-generation sequencing (NGS) has become the gold standard for advanced microbiome analysis; however, 3rd generation real-time sequencing, such...

Cite
Ammer-Herrmenau C, Pfisterer N, van den Berg T, et al. Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems. 2021;6(4):e0075021doi: 10.1128/mSystems.00750-21.
Ammer-Herrmenau, C., Pfisterer, N., van den Berg, T., Gavrilova, I., Amanzada, A., Singh, S. K., Khalil, A., Alili, R., Belda, E., Clement, K., Abd El Wahed, A., Gady, E. E., Haubrock, M., Beißbarth, T., Ellenrieder, V., & Neesse, A. (2021). Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems, 6(4), e0075021. https://doi.org/10.1128/mSystems.00750-21
Ammer-Herrmenau, Christoph, et al. "Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies." mSystems vol. 6,4 (2021): e0075021. doi: https://doi.org/10.1128/mSystems.00750-21
Ammer-Herrmenau C, Pfisterer N, van den Berg T, Gavrilova I, Amanzada A, Singh SK, Khalil A, Alili R, Belda E, Clement K, Abd El Wahed A, Gady EE, Haubrock M, Beißbarth T, Ellenrieder V, Neesse A. Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems. 2021 Aug 31;6(4):e0075021. doi: 10.1128/mSystems.00750-21. Epub 2021 Aug 24. PMID: 34427527; PMCID: PMC8407471.
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USP22 Suppresses .

Cancers

Kosinsky RL, Saul D, Ammer-Herrmenau C, Faubion WA, Neesse A, Johnsen SA.
PMID: 33920268
Cancers (Basel). 2021 Apr 10;13(8). doi: 10.3390/cancers13081817.

As a member of the 11-gene "death-from-cancer" gene expression signature, ubiquitin-specific protease 22 (USP22) has been considered an oncogene in various human malignancies, including colorectal cancer (CRC). We recently identified an unexpected tumor-suppressive function of USP22 in CRC and...

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Kosinsky RL, Saul D, Ammer-Herrmenau C, et al. USP22 Suppresses . Cancers (Basel). 2021;13(8)doi: 10.3390/cancers13081817.
Kosinsky, R. L., Saul, D., Ammer-Herrmenau, C., Faubion, W. A., Neesse, A., & Johnsen, S. A. (2021). USP22 Suppresses . Cancers, 13(8), . https://doi.org/10.3390/cancers13081817
Kosinsky, Robyn Laura, et al. "USP22 Suppresses ." Cancers vol. 13,8 (2021). doi: https://doi.org/10.3390/cancers13081817
Kosinsky RL, Saul D, Ammer-Herrmenau C, Faubion WA, Neesse A, Johnsen SA. USP22 Suppresses . Cancers (Basel). 2021 Apr 10;13(8). doi: 10.3390/cancers13081817. PMID: 33920268; PMCID: PMC8070211.
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Depletion of Macrophages Improves Therapeutic Response to Gemcitabine in Murine Pancreas Cancer.

Cancers

Buchholz SM, Goetze RG, Singh SK, Ammer-Herrmenau C, Richards FM, Jodrell DI, Buchholz M, Michl P, Ellenrieder V, Hessmann E, Neesse A.
PMID: 32698524
Cancers (Basel). 2020 Jul 20;12(7). doi: 10.3390/cancers12071978.

BACKGROUND: The tumor microenvironment (TME) is composed of fibro-inflammatory cells and extracellular matrix (ECM) components. However, the exact contribution of the various TME compartments towards therapeutic response is unknown. Here, we aim to dissect the specific contribution of tumor-associated...

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Buchholz SM, Goetze RG, Singh SK, et al. Depletion of Macrophages Improves Therapeutic Response to Gemcitabine in Murine Pancreas Cancer. Cancers (Basel). 2020;12(7)doi: 10.3390/cancers12071978.
Buchholz, S. M., Goetze, R. G., Singh, S. K., Ammer-Herrmenau, C., Richards, F. M., Jodrell, D. I., Buchholz, M., Michl, P., Ellenrieder, V., Hessmann, E., & Neesse, A. (2020). Depletion of Macrophages Improves Therapeutic Response to Gemcitabine in Murine Pancreas Cancer. Cancers, 12(7), . https://doi.org/10.3390/cancers12071978
Buchholz, Soeren M, et al. "Depletion of Macrophages Improves Therapeutic Response to Gemcitabine in Murine Pancreas Cancer." Cancers vol. 12,7 (2020). doi: https://doi.org/10.3390/cancers12071978
Buchholz SM, Goetze RG, Singh SK, Ammer-Herrmenau C, Richards FM, Jodrell DI, Buchholz M, Michl P, Ellenrieder V, Hessmann E, Neesse A. Depletion of Macrophages Improves Therapeutic Response to Gemcitabine in Murine Pancreas Cancer. Cancers (Basel). 2020 Jul 20;12(7). doi: 10.3390/cancers12071978. PMID: 32698524; PMCID: PMC7409345.
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[Chronic pancreatitis: update diagnostic and therapeutic concepts].

Zeitschrift fur Gastroenterologie

Ammer-Herrmenau C, Ellenrieder V, Neesse A.
PMID: 34798674
Z Gastroenterol. 2021 Nov 19; doi: 10.1055/a-1659-4636. Epub 2021 Nov 19.

INTRODUCTION: Chronic pancreatitis (CP) is a frequent cause for hospitalization and is associated with impaired quality of life and reduced overall survival. The German Society for Gastroenterology (DGVS) has recently completed the S3-Guideline "Pancreatitis" that summarizes key findings on...

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Ammer-Herrmenau C, Ellenrieder V, Neesse A. Chronische Pankreatitis: Update Diagnostik und Therapie. [Chronic pancreatitis: update diagnostic and therapeutic concepts]. Z Gastroenterol. 2021;doi: 10.1055/a-1659-4636.
Ammer-Herrmenau, C., Ellenrieder, V., & Neesse, A. (2021). Chronische Pankreatitis: Update Diagnostik und Therapie. [Chronic pancreatitis: update diagnostic and therapeutic concepts]. Zeitschrift fur Gastroenterologie, . https://doi.org/10.1055/a-1659-4636
Ammer-Herrmenau, Christoph, et al. "Chronische Pankreatitis: Update Diagnostik und Therapie." [Chronic pancreatitis: update diagnostic and therapeutic concepts]. Zeitschrift fur Gastroenterologie vol. (2021). doi: https://doi.org/10.1055/a-1659-4636
Ammer-Herrmenau C, Ellenrieder V, Neesse A. Chronische Pankreatitis: Update Diagnostik und Therapie. [Chronic pancreatitis: update diagnostic and therapeutic concepts]. Z Gastroenterol. 2021 Nov 19; doi: 10.1055/a-1659-4636. Epub 2021 Nov 19. German. PMID: 34798674.
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Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies.

mSystems

Ammer-Herrmenau C, Pfisterer N, van den Berg T, Gavrilova I, Amanzada A, Singh SK, Khalil A, Alili R, Belda E, Clement K, Abd El Wahed A, Gady EE, Haubrock M, Beißbarth T, Ellenrieder V, Neesse A.
PMID: 34427527
mSystems. 2021 Aug 31;6(4):e0075021. doi: 10.1128/mSystems.00750-21. Epub 2021 Aug 24.

The advent of high-throughput sequencing techniques has recently provided an astonishing insight into the composition and function of the human microbiome. Next-generation sequencing (NGS) has become the gold standard for advanced microbiome analysis; however, 3rd generation real-time sequencing, such...

Cite
Ammer-Herrmenau C, Pfisterer N, van den Berg T, et al. Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems. 2021;6(4):e0075021doi: 10.1128/mSystems.00750-21.
Ammer-Herrmenau, C., Pfisterer, N., van den Berg, T., Gavrilova, I., Amanzada, A., Singh, S. K., Khalil, A., Alili, R., Belda, E., Clement, K., Abd El Wahed, A., Gady, E. E., Haubrock, M., Beißbarth, T., Ellenrieder, V., & Neesse, A. (2021). Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems, 6(4), e0075021. https://doi.org/10.1128/mSystems.00750-21
Ammer-Herrmenau, Christoph, et al. "Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies." mSystems vol. 6,4 (2021): e0075021. doi: https://doi.org/10.1128/mSystems.00750-21
Ammer-Herrmenau C, Pfisterer N, van den Berg T, Gavrilova I, Amanzada A, Singh SK, Khalil A, Alili R, Belda E, Clement K, Abd El Wahed A, Gady EE, Haubrock M, Beißbarth T, Ellenrieder V, Neesse A. Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems. 2021 Aug 31;6(4):e0075021. doi: 10.1128/mSystems.00750-21. Epub 2021 Aug 24. PMID: 34427527; PMCID: PMC8407471.
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Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies.

mSystems

Ammer-Herrmenau C, Pfisterer N, van den Berg T, Gavrilova I, Amanzada A, Singh SK, Khalil A, Alili R, Belda E, Clement K, Abd El Wahed A, Gady EE, Haubrock M, Beißbarth T, Ellenrieder V, Neesse A.
PMID: 34427527
mSystems. 2021 Aug 31;6(4):e0075021. doi: 10.1128/mSystems.00750-21. Epub 2021 Aug 24.

The advent of high-throughput sequencing techniques has recently provided an astonishing insight into the composition and function of the human microbiome. Next-generation sequencing (NGS) has become the gold standard for advanced microbiome analysis; however, 3rd generation real-time sequencing, such...

Cite
Ammer-Herrmenau C, Pfisterer N, van den Berg T, et al. Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems. 2021;6(4):e0075021doi: 10.1128/mSystems.00750-21.
Ammer-Herrmenau, C., Pfisterer, N., van den Berg, T., Gavrilova, I., Amanzada, A., Singh, S. K., Khalil, A., Alili, R., Belda, E., Clement, K., Abd El Wahed, A., Gady, E. E., Haubrock, M., Beißbarth, T., Ellenrieder, V., & Neesse, A. (2021). Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems, 6(4), e0075021. https://doi.org/10.1128/mSystems.00750-21
Ammer-Herrmenau, Christoph, et al. "Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies." mSystems vol. 6,4 (2021): e0075021. doi: https://doi.org/10.1128/mSystems.00750-21
Ammer-Herrmenau C, Pfisterer N, van den Berg T, Gavrilova I, Amanzada A, Singh SK, Khalil A, Alili R, Belda E, Clement K, Abd El Wahed A, Gady EE, Haubrock M, Beißbarth T, Ellenrieder V, Neesse A. Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies. mSystems. 2021 Aug 31;6(4):e0075021. doi: 10.1128/mSystems.00750-21. Epub 2021 Aug 24. PMID: 34427527; PMCID: PMC8407471.
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Showing 1 to 6 of 6 entries