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Pattern Recognition-Assisted Infrared Library Searching of the Paint Data Query Database to Enhance Lead Information from Automotive Paint Trace Evidence.

Applied spectroscopy

Lavine BK, White CG, Allen MD, Weakley A.
PMID: 27708178
Appl Spectrosc. 2017 Mar;71(3):480-495. doi: 10.1177/0003702816666287. Epub 2016 Oct 06.

Multilayered automotive paint fragments, which are one of the most complex materials encountered in the forensic science laboratory, provide crucial links in criminal investigations and prosecutions. To determine the origin of these paint fragments, forensic automotive paint examiners have...

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Lavine BK, White CG, Allen MD, et al. Pattern Recognition-Assisted Infrared Library Searching of the Paint Data Query Database to Enhance Lead Information from Automotive Paint Trace Evidence. Appl Spectrosc. 2016;71(3):480-495doi: 10.1177/0003702816666287.
Lavine, B. K., White, C. G., Allen, M. D., & Weakley, A. (2017). Pattern Recognition-Assisted Infrared Library Searching of the Paint Data Query Database to Enhance Lead Information from Automotive Paint Trace Evidence. Applied spectroscopy, 71(3), 480-495. https://doi.org/10.1177/0003702816666287
Lavine, Barry K, et al. "Pattern Recognition-Assisted Infrared Library Searching of the Paint Data Query Database to Enhance Lead Information from Automotive Paint Trace Evidence." Applied spectroscopy vol. 71,3 (2017): 480-495. doi: https://doi.org/10.1177/0003702816666287
Lavine BK, White CG, Allen MD, Weakley A. Pattern Recognition-Assisted Infrared Library Searching of the Paint Data Query Database to Enhance Lead Information from Automotive Paint Trace Evidence. Appl Spectrosc. 2017 Mar;71(3):480-495. doi: 10.1177/0003702816666287. Epub 2016 Oct 06. PMID: 27708178.
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The relationship between blood pressure and sciatic nerve blood flow velocity in rats with insulin-treated experimental diabetes.

Diabetes & vascular disease research

Olver TD, Grisé KN, McDonald MW, Dey A, Allen MD, Rice CL, Lacefield JC, Melling CJ, Noble EG, Shoemaker JK.
PMID: 24853907
Diab Vasc Dis Res. 2014 Jul;11(4):281-289. doi: 10.1177/1479164114533357. Epub 2014 May 22.

Peripheral nerve blood flow (NBF) does not autoregulate but, instead, responds passively to changes in mean arterial pressure (MAP). How this relationship is impacted by insulin-treated experimental diabetes (ITED) is unknown. We tested the hypothesis that ITED will reduce...

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Olver TD, Grisé KN, McDonald MW, et al. The relationship between blood pressure and sciatic nerve blood flow velocity in rats with insulin-treated experimental diabetes. Diab Vasc Dis Res. 2014;11(4):281-289doi: 10.1177/1479164114533357.
Olver, T. D., Grisé, K. N., McDonald, M. W., Dey, A., Allen, M. D., Rice, C. L., Lacefield, J. C., Melling, C. J., Noble, E. G., & Shoemaker, J. K. (2014). The relationship between blood pressure and sciatic nerve blood flow velocity in rats with insulin-treated experimental diabetes. Diabetes & vascular disease research, 11(4), 281-289. https://doi.org/10.1177/1479164114533357
Olver, T Dylan, et al. "The relationship between blood pressure and sciatic nerve blood flow velocity in rats with insulin-treated experimental diabetes." Diabetes & vascular disease research vol. 11,4 (2014): 281-289. doi: https://doi.org/10.1177/1479164114533357
Olver TD, Grisé KN, McDonald MW, Dey A, Allen MD, Rice CL, Lacefield JC, Melling CJ, Noble EG, Shoemaker JK. The relationship between blood pressure and sciatic nerve blood flow velocity in rats with insulin-treated experimental diabetes. Diab Vasc Dis Res. 2014 Jul;11(4):281-289. doi: 10.1177/1479164114533357. Epub 2014 May 22. PMID: 24853907.
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Intracoronary E- and L-selectin blockade attenuates myocardial neutrophil infiltration in cardiac ischemia/reperfusion injury.

Current surgery

Carter YM, Thomas R, Bargatze R, Jutila M, Murry C, Allen MD.
PMID: 11120324
Curr Surg. 2000 Nov;57(6):639-640. doi: 10.1016/s0149-7944(00)00365-2.

No abstract available.

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Carter YM, Thomas R, Bargatze R, et al. Intracoronary E- and L-selectin blockade attenuates myocardial neutrophil infiltration in cardiac ischemia/reperfusion injury. Curr Surg. 2000;57(6):639-640doi: 10.1016/s0149-7944(00)00365-2.
Carter, Y. M., Thomas, R., Bargatze, R., Jutila, M., Murry, C., & Allen, M. D. (2000). Intracoronary E- and L-selectin blockade attenuates myocardial neutrophil infiltration in cardiac ischemia/reperfusion injury. Current surgery, 57(6), 639-640. https://doi.org/10.1016/s0149-7944(00)00365-2
Carter, et al. "Intracoronary E- and L-selectin blockade attenuates myocardial neutrophil infiltration in cardiac ischemia/reperfusion injury." Current surgery vol. 57,6 (2000): 639-640. doi: https://doi.org/10.1016/s0149-7944(00)00365-2
Carter YM, Thomas R, Bargatze R, Jutila M, Murry C, Allen MD. Intracoronary E- and L-selectin blockade attenuates myocardial neutrophil infiltration in cardiac ischemia/reperfusion injury. Curr Surg. 2000 Nov;57(6):639-640. doi: 10.1016/s0149-7944(00)00365-2. PMID: 11120324.
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Hexafluorotitanate salts containing organic cations: use as a reaction medium and precursor to the synthesis of titanium dioxide.

Chemical communications (Cambridge, England)

Gutiérrez-Tauste D, Domènech X, Domingo C, Ayllón JA.
PMID: 17989824
Chem Commun (Camb). 2007 Nov 28;(44):4659-61. doi: 10.1039/b709578c. Epub 2007 Oct 10.

The straightforward modification of commercial hexafluorotitanic acid with organic derivatives containing a tetraalkylammonium cation produced stable precursor solutions with only a small fraction of water, which were then used as a reaction medium for the synthesis of nanocrystalline TiO(2).

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Gutiérrez-Tauste D, Domènech X, Domingo C, et al. Hexafluorotitanate salts containing organic cations: use as a reaction medium and precursor to the synthesis of titanium dioxide. Chem Commun (Camb). 2007;(44):4659-61doi: 10.1039/b709578c.
Gutiérrez-Tauste, D., Domènech, X., Domingo, C., & Ayllón, J. A. (2007). Hexafluorotitanate salts containing organic cations: use as a reaction medium and precursor to the synthesis of titanium dioxide. Chemical communications (Cambridge, England), (44), 4659-61. https://doi.org/10.1039/b709578c
Gutiérrez-Tauste, David, et al. "Hexafluorotitanate salts containing organic cations: use as a reaction medium and precursor to the synthesis of titanium dioxide." Chemical communications (Cambridge, England) vol. ,44 (2007): 4659-61. doi: https://doi.org/10.1039/b709578c
Gutiérrez-Tauste D, Domènech X, Domingo C, Ayllón JA. Hexafluorotitanate salts containing organic cations: use as a reaction medium and precursor to the synthesis of titanium dioxide. Chem Commun (Camb). 2007 Nov 28;(44):4659-61. doi: 10.1039/b709578c. Epub 2007 Oct 10. PMID: 17989824.
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An atypical 3'-controller element mediates low-level transcription of the p6 subgenomic mRNA of Citrus tristeza virus.

Molecular plant pathology

Ayllón MA, Satyanarayana T, Gowda S, Dawson WO.
PMID: 20565647
Mol Plant Pathol. 2005 Mar 01;6(2):165-76. doi: 10.1111/j.1364-3703.2005.00275.x.

SUMMARY Citrus tristeza virus (CTV) has within the 3'-half of the genome ten open reading frames (ORFs) that are expressed through a series of 3'-coterminal subgenomic (sg) messenger (m)RNAs that, in general, function as monocistronic mRNAs with only the...

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Ayllón MA, Satyanarayana T, Gowda S, et al. An atypical 3'-controller element mediates low-level transcription of the p6 subgenomic mRNA of Citrus tristeza virus. Mol Plant Pathol. 2005;6(2):165-76doi: 10.1111/j.1364-3703.2005.00275.x.
Ayllón, M. A., Satyanarayana, T., Gowda, S., & Dawson, W. O. (2005). An atypical 3'-controller element mediates low-level transcription of the p6 subgenomic mRNA of Citrus tristeza virus. Molecular plant pathology, 6(2), 165-76. https://doi.org/10.1111/j.1364-3703.2005.00275.x
Ayllón, María A, et al. "An atypical 3'-controller element mediates low-level transcription of the p6 subgenomic mRNA of Citrus tristeza virus." Molecular plant pathology vol. 6,2 (2005): 165-76. doi: https://doi.org/10.1111/j.1364-3703.2005.00275.x
Ayllón MA, Satyanarayana T, Gowda S, Dawson WO. An atypical 3'-controller element mediates low-level transcription of the p6 subgenomic mRNA of Citrus tristeza virus. Mol Plant Pathol. 2005 Mar 01;6(2):165-76. doi: 10.1111/j.1364-3703.2005.00275.x. PMID: 20565647.
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Eco-evolutionary responses to recreational fishing under different harvest regulations.

Ecology and evolution

Ayllón D, Railsback SF, Almodóvar A, Nicola GG, Vincenzi S, Elvira B, Grimm V.
PMID: 30386560
Ecol Evol. 2018 Sep 11;8(19):9600-9613. doi: 10.1002/ece3.4270. eCollection 2018 Oct.

Harvesting alters demography and life histories of exploited populations, and there is mounting evidence that rapid phenotypic changes at the individual level can occur when harvest is intensive. Therefore, recreational fishing is expected to induce both ecological and rapid...

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Ayllón D, Railsback SF, Almodóvar A, et al. Eco-evolutionary responses to recreational fishing under different harvest regulations. Ecol Evol. 2018;8(19):9600-9613doi: 10.1002/ece3.4270.
Ayllón, D., Railsback, S. F., Almodóvar, A., Nicola, G. G., Vincenzi, S., Elvira, B., & Grimm, V. (2018). Eco-evolutionary responses to recreational fishing under different harvest regulations. Ecology and evolution, 8(19), 9600-9613. https://doi.org/10.1002/ece3.4270
Ayllón, Daniel, et al. "Eco-evolutionary responses to recreational fishing under different harvest regulations." Ecology and evolution vol. 8,19 (2018): 9600-9613. doi: https://doi.org/10.1002/ece3.4270
Ayllón D, Railsback SF, Almodóvar A, Nicola GG, Vincenzi S, Elvira B, Grimm V. Eco-evolutionary responses to recreational fishing under different harvest regulations. Ecol Evol. 2018 Sep 11;8(19):9600-9613. doi: 10.1002/ece3.4270. eCollection 2018 Oct. PMID: 30386560; PMCID: PMC6202708.
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Developing the Standard of Care for Post-Concussion Treatment: Neuroimaging-Guided Rehabilitation of Neurovascular Coupling.

The open neuroimaging journal

Wing BH, Tucker BJ, Fong AK, Allen MD.
PMID: 29299085
Open Neuroimag J. 2017 Oct 24;11:58-71. doi: 10.2174/1874440001711010058. eCollection 2017.

BACKGROUND: Emerging research proposes the imbalance between microvascular supply and metabolic demand as a contributing factor in the pathophysiology of mild traumatic brain injury. Prolonged effects on the dysregulation of neurovascular coupling may explain persistent symptomatic models such as...

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Wing BH, Tucker BJ, Fong AK, et al. Developing the Standard of Care for Post-Concussion Treatment: Neuroimaging-Guided Rehabilitation of Neurovascular Coupling. Open Neuroimag J. 2017;11:58-71doi: 10.2174/1874440001711010058.
Wing, B. H., Tucker, B. J., Fong, A. K., & Allen, M. D. (2017). Developing the Standard of Care for Post-Concussion Treatment: Neuroimaging-Guided Rehabilitation of Neurovascular Coupling. The open neuroimaging journal, 1158-71. https://doi.org/10.2174/1874440001711010058
Wing, Benjamin H, et al. "Developing the Standard of Care for Post-Concussion Treatment: Neuroimaging-Guided Rehabilitation of Neurovascular Coupling." The open neuroimaging journal vol. 11 (2017): 58-71. doi: https://doi.org/10.2174/1874440001711010058
Wing BH, Tucker BJ, Fong AK, Allen MD. Developing the Standard of Care for Post-Concussion Treatment: Neuroimaging-Guided Rehabilitation of Neurovascular Coupling. Open Neuroimag J. 2017 Oct 24;11:58-71. doi: 10.2174/1874440001711010058. eCollection 2017. PMID: 29299085; PMCID: PMC5725584.
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NG2 antigen is involved in leukemia invasiveness and central nervous system infiltration in MLL-rearranged infant B-ALL.

Leukemia

Prieto C, López-Millán B, Roca-Ho H, Stam RW, Romero-Moya D, Rodríguez-Baena FJ, Sanjuan-Pla A, Ayllón V, Ramírez M, Bardini M, De Lorenzo P, Valsecchi MG, Stanulla M, Iglesias M, Ballerini P, Carcaboso ÁM, Mora J, Locatelli F, Bertaina A, Padilla L, Rodríguez-Manzaneque JC, Bueno C, Menéndez P.
PMID: 28943635
Leukemia. 2018 Mar;32(3):633-644. doi: 10.1038/leu.2017.294. Epub 2017 Sep 25.

Mixed-lineage leukemia (MLL)-rearranged (MLLr) infant B-cell acute lymphoblastic leukemia (iMLLr-B-ALL) has a dismal prognosis and is associated with a pro-B/mixed phenotype, therapy refractoriness and frequent central nervous system (CNS) disease/relapse. Neuron-glial antigen 2 (NG2) is specifically expressed in MLLr...

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Prieto C, López-Millán B, Roca-Ho H, et al. NG2 antigen is involved in leukemia invasiveness and central nervous system infiltration in MLL-rearranged infant B-ALL. Leukemia. 2017;32(3):633-644doi: 10.1038/leu.2017.294.
Prieto, C., López-Millán, B., Roca-Ho, H., Stam, R. W., Romero-Moya, D., Rodríguez-Baena, F. J., Sanjuan-Pla, A., Ayllón, V., Ramírez, M., Bardini, M., De Lorenzo, P., Valsecchi, M. G., Stanulla, M., Iglesias, M., Ballerini, P., Carcaboso, �. �. M., Mora, J., Locatelli, F., Bertaina, A., Padilla, L., Rodríguez-Manzaneque, J. C., Bueno, C., & Menéndez, P. (2018). NG2 antigen is involved in leukemia invasiveness and central nervous system infiltration in MLL-rearranged infant B-ALL. Leukemia, 32(3), 633-644. https://doi.org/10.1038/leu.2017.294
Prieto, C, et al. "NG2 antigen is involved in leukemia invasiveness and central nervous system infiltration in MLL-rearranged infant B-ALL." Leukemia vol. 32,3 (2018): 633-644. doi: https://doi.org/10.1038/leu.2017.294
Prieto C, López-Millán B, Roca-Ho H, Stam RW, Romero-Moya D, Rodríguez-Baena FJ, Sanjuan-Pla A, Ayllón V, Ramírez M, Bardini M, De Lorenzo P, Valsecchi MG, Stanulla M, Iglesias M, Ballerini P, Carcaboso ÁM, Mora J, Locatelli F, Bertaina A, Padilla L, Rodríguez-Manzaneque JC, Bueno C, Menéndez P. NG2 antigen is involved in leukemia invasiveness and central nervous system infiltration in MLL-rearranged infant B-ALL. Leukemia. 2018 Mar;32(3):633-644. doi: 10.1038/leu.2017.294. Epub 2017 Sep 25. PMID: 28943635; PMCID: PMC5843903.
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Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock.

International journal of proteomics

Villar M, Ayllón N, Busby AT, Galindo RC, Blouin EF, Kocan KM, Bonzón-Kulichenko E, Zivkovic Z, Almazán C, Torina A, Vázquez J, de la Fuente J.
PMID: 22084679
Int J Proteomics. 2010;2010:657261. doi: 10.1155/2010/657261. Epub 2010 Sep 29.

Ticks are ectoparasites of animals and humans that serve as vectors of Anaplasma and other pathogens that affect humans and animals worldwide. Ticks and the pathogens that they transmit have coevolved molecular interactions involving genetic traits of both the...

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Villar M, Ayllón N, Busby AT, et al. Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock. Int J Proteomics. 2010;2010:657261doi: 10.1155/2010/657261.
Villar, M., Ayllón, N., Busby, A. T., Galindo, R. C., Blouin, E. F., Kocan, K. M., Bonzón-Kulichenko, E., Zivkovic, Z., Almazán, C., Torina, A., Vázquez, J., & de la Fuente, J. (2010). Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock. International journal of proteomics, 2010657261. https://doi.org/10.1155/2010/657261
Villar, Margarita, et al. "Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock." International journal of proteomics vol. 2010 (2010): 657261. doi: https://doi.org/10.1155/2010/657261
Villar M, Ayllón N, Busby AT, Galindo RC, Blouin EF, Kocan KM, Bonzón-Kulichenko E, Zivkovic Z, Almazán C, Torina A, Vázquez J, de la Fuente J. Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock. Int J Proteomics. 2010;2010:657261. doi: 10.1155/2010/657261. Epub 2010 Sep 29. PMID: 22084679; PMCID: PMC3200212.
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A genome guided evaluation of the Lab4 probiotic consortium.

Genomics

Baker LM, Webberley TS, Masetti G, Hughes TR, Marchesi JR, Jack AA, Joyce TSC, Allen MD, Plummer SF, Michael DR, Ramanathan G, Del Sol R, Facey PD.
PMID: 34391865
Genomics. 2021 Nov;113(6):4028-4038. doi: 10.1016/j.ygeno.2021.08.007. Epub 2021 Aug 13.

Draft genome sequences of the Lab4 probiotic consortium were deposited in Genbank: Bifidobacterium animalis subsp lactis CUL34 (PRJNA482550), Bifidobacterium bifidum CUL20 (PRJNA559984), Lactobacillus acidophilus CUL60 (PRJNA482335), Lactobacillus acidophilus CUL21 (PRJNA482434). Probiogenomic analyses confirmed existing taxonomies and identified putative gene...

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Baker LM, Webberley TS, Masetti G, et al. A genome guided evaluation of the Lab4 probiotic consortium. Genomics. 2021;113(6):4028-4038doi: 10.1016/j.ygeno.2021.08.007.
Baker, L. M., Webberley, T. S., Masetti, G., Hughes, T. R., Marchesi, J. R., Jack, A. A., Joyce, T. S. C., Allen, M. D., Plummer, S. F., Michael, D. R., Ramanathan, G., Del Sol, R., & Facey, P. D. (2021). A genome guided evaluation of the Lab4 probiotic consortium. Genomics, 113(6), 4028-4038. https://doi.org/10.1016/j.ygeno.2021.08.007
Baker, L M, et al. "A genome guided evaluation of the Lab4 probiotic consortium." Genomics vol. 113,6 (2021): 4028-4038. doi: https://doi.org/10.1016/j.ygeno.2021.08.007
Baker LM, Webberley TS, Masetti G, Hughes TR, Marchesi JR, Jack AA, Joyce TSC, Allen MD, Plummer SF, Michael DR, Ramanathan G, Del Sol R, Facey PD. A genome guided evaluation of the Lab4 probiotic consortium. Genomics. 2021 Nov;113(6):4028-4038. doi: 10.1016/j.ygeno.2021.08.007. Epub 2021 Aug 13. PMID: 34391865.
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Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes.

JACS Au

Ellis ES, Hinchen DJ, Bleem A, Bu L, Mallinson SJB, Allen MD, Streit BR, Machovina MM, Doolin QV, Michener WE, Johnson CW, Knott BC, Beckham GT, McGeehan JE, DuBois JL.
PMID: 34467290
JACS Au. 2021 Feb 04;1(3):252-261. doi: 10.1021/jacsau.0c00103. eCollection 2021 Mar 22.

Biological funneling of lignin-derived aromatic compounds is a promising approach for valorizing its catalytic depolymerization products. Industrial processes for aromatic bioconversion will require efficient enzymes for key reactions, including demethylation of

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Ellis ES, Hinchen DJ, Bleem A, et al. Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes. JACS Au. 2021;1(3):252-261doi: 10.1021/jacsau.0c00103.
Ellis, E. S., Hinchen, D. J., Bleem, A., Bu, L., Mallinson, S. J. B., Allen, M. D., Streit, B. R., Machovina, M. M., Doolin, Q. V., Michener, W. E., Johnson, C. W., Knott, B. C., Beckham, G. T., McGeehan, J. E., & DuBois, J. L. (2021). Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes. JACS Au, 1(3), 252-261. https://doi.org/10.1021/jacsau.0c00103
Ellis, Emerald S, et al. "Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes." JACS Au vol. 1,3 (2021): 252-261. doi: https://doi.org/10.1021/jacsau.0c00103
Ellis ES, Hinchen DJ, Bleem A, Bu L, Mallinson SJB, Allen MD, Streit BR, Machovina MM, Doolin QV, Michener WE, Johnson CW, Knott BC, Beckham GT, McGeehan JE, DuBois JL. Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes. JACS Au. 2021 Feb 04;1(3):252-261. doi: 10.1021/jacsau.0c00103. eCollection 2021 Mar 22. PMID: 34467290; PMCID: PMC8395679.
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Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages.

Virus evolution

Chiapello M, Rodríguez-Romero J, Ayllón MA, Turina M.
PMID: 33324489
Virus Evol. 2020 Nov 30;6(2):veaa058. doi: 10.1093/ve/veaa058. eCollection 2020 Jul.

The obligatory biotrophic oomycetes

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Chiapello M, Rodríguez-Romero J, Ayllón MA, et al. Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages. Virus Evol. 2020;6(2):veaa058doi: 10.1093/ve/veaa058.
Chiapello, M., Rodríguez-Romero, J., Ayllón, M. A., & Turina, M. (2020). Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages. Virus evolution, 6(2), veaa058. https://doi.org/10.1093/ve/veaa058
Chiapello, M, et al. "Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages." Virus evolution vol. 6,2 (2020): veaa058. doi: https://doi.org/10.1093/ve/veaa058
Chiapello M, Rodríguez-Romero J, Ayllón MA, Turina M. Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages. Virus Evol. 2020 Nov 30;6(2):veaa058. doi: 10.1093/ve/veaa058. eCollection 2020 Jul. PMID: 33324489; PMCID: PMC7724247.
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