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Showing 1 to 12 of 23 entries
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Advocacy efforts in trauma and acute care surgery: learning to walk.

Trauma surgery & acute care open

Kaplan LJ, Barquist E, Jenkins D, Kirton O.
PMID: 29766086
Trauma Surg Acute Care Open. 2017 Mar 22;2(1):e000077. doi: 10.1136/tsaco-2017-000077. eCollection 2017.

No abstract available.

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Kaplan LJ, Barquist E, Jenkins D, et al. Advocacy efforts in trauma and acute care surgery: learning to walk. Trauma Surg Acute Care Open. 2017;2(1):e000077doi: 10.1136/tsaco-2017-000077.
Kaplan, L. J., Barquist, E., Jenkins, D., & Kirton, O. (2017). Advocacy efforts in trauma and acute care surgery: learning to walk. Trauma surgery & acute care open, 2(1), e000077. https://doi.org/10.1136/tsaco-2017-000077
Kaplan, Lewis J, et al. "Advocacy efforts in trauma and acute care surgery: learning to walk." Trauma surgery & acute care open vol. 2,1 (2017): e000077. doi: https://doi.org/10.1136/tsaco-2017-000077
Kaplan LJ, Barquist E, Jenkins D, Kirton O. Advocacy efforts in trauma and acute care surgery: learning to walk. Trauma Surg Acute Care Open. 2017 Mar 22;2(1):e000077. doi: 10.1136/tsaco-2017-000077. eCollection 2017. PMID: 29766086; PMCID: PMC5877898.
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Functional analysis of colonization factor antigen I positive enterotoxigenic .

Microbial genomics

Abd El Ghany M, Barquist L, Clare S, Brandt C, Mayho M, Joffre E, Sjöling Å, Turner AK, Klena JD, Kingsley RA, Hill-Cawthorne GA, Dougan G, Pickard D.
PMID: 34110281
Microb Genom. 2021 Jun;7(6). doi: 10.1099/mgen.0.000554.

Enterotoxigenic

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Abd El Ghany M, Barquist L, Clare S, et al. Functional analysis of colonization factor antigen I positive enterotoxigenic . Microb Genom. 2021;7(6)doi: 10.1099/mgen.0.000554.
Abd El Ghany, M., Barquist, L., Clare, S., Brandt, C., Mayho, M., Joffre, E., Sjöling, �. �., Turner, A. K., Klena, J. D., Kingsley, R. A., Hill-Cawthorne, G. A., Dougan, G., & Pickard, D. (2021). Functional analysis of colonization factor antigen I positive enterotoxigenic . Microbial genomics, 7(6), . https://doi.org/10.1099/mgen.0.000554
Abd El Ghany, Moataz, et al. "Functional analysis of colonization factor antigen I positive enterotoxigenic ." Microbial genomics vol. 7,6 (2021). doi: https://doi.org/10.1099/mgen.0.000554
Abd El Ghany M, Barquist L, Clare S, Brandt C, Mayho M, Joffre E, Sjöling Å, Turner AK, Klena JD, Kingsley RA, Hill-Cawthorne GA, Dougan G, Pickard D. Functional analysis of colonization factor antigen I positive enterotoxigenic . Microb Genom. 2021 Jun;7(6). doi: 10.1099/mgen.0.000554. PMID: 34110281; PMCID: PMC8461466.
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An RNA-centric global view of .

Proceedings of the National Academy of Sciences of the United States of America

Fuchs M, Lamm-Schmidt V, Sulzer J, Ponath F, Jenniches L, Kirk JA, Fagan RP, Barquist L, Vogel J, Faber F.
PMID: 34131082
Proc Natl Acad Sci U S A. 2021 Jun 22;118(25). doi: 10.1073/pnas.2103579118.

The gram-positive human pathogen

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Fuchs M, Lamm-Schmidt V, Sulzer J, et al. An RNA-centric global view of . Proc Natl Acad Sci U S A. 2021;118(25)doi: 10.1073/pnas.2103579118.
Fuchs, M., Lamm-Schmidt, V., Sulzer, J., Ponath, F., Jenniches, L., Kirk, J. A., Fagan, R. P., Barquist, L., Vogel, J., & Faber, F. (2021). An RNA-centric global view of . Proceedings of the National Academy of Sciences of the United States of America, 118(25), . https://doi.org/10.1073/pnas.2103579118
Fuchs, Manuela, et al. "An RNA-centric global view of ." Proceedings of the National Academy of Sciences of the United States of America vol. 118,25 (2021). doi: https://doi.org/10.1073/pnas.2103579118
Fuchs M, Lamm-Schmidt V, Sulzer J, Ponath F, Jenniches L, Kirk JA, Fagan RP, Barquist L, Vogel J, Faber F. An RNA-centric global view of . Proc Natl Acad Sci U S A. 2021 Jun 22;118(25). doi: 10.1073/pnas.2103579118. PMID: 34131082; PMCID: PMC8237595.
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Global identification of RsmA/N binding sites in .

RNA biology

Chihara K, Barquist L, Takasugi K, Noda N, Tsuneda S.
PMID: 33866926
RNA Biol. 2021 Dec;18(12):2401-2416. doi: 10.1080/15476286.2021.1917184. Epub 2021 Apr 27.

No abstract available.

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Chihara K, Barquist L, Takasugi K, et al. Global identification of RsmA/N binding sites in . RNA Biol. 2021;18(12):2401-2416doi: 10.1080/15476286.2021.1917184.
Chihara, K., Barquist, L., Takasugi, K., Noda, N., & Tsuneda, S. (2021). Global identification of RsmA/N binding sites in . RNA biology, 18(12), 2401-2416. https://doi.org/10.1080/15476286.2021.1917184
Chihara, Kotaro, et al. "Global identification of RsmA/N binding sites in ." RNA biology vol. 18,12 (2021): 2401-2416. doi: https://doi.org/10.1080/15476286.2021.1917184
Chihara K, Barquist L, Takasugi K, Noda N, Tsuneda S. Global identification of RsmA/N binding sites in . RNA Biol. 2021 Dec;18(12):2401-2416. doi: 10.1080/15476286.2021.1917184. Epub 2021 Apr 27. PMID: 33866926; PMCID: PMC8632088.
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Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing.

mSystems

Chihara K, Bischler T, Barquist L, Monzon VA, Noda N, Vogel J, Tsuneda S.
PMID: 31796567
mSystems. 2019 Dec 03;4(6). doi: 10.1128/mSystems.00590-19.

Bacterial small noncoding RNAs (sRNAs) play posttranscriptional regulatory roles in cellular responses to changing environmental cues and in adaptation to harsh conditions. Generally, the RNA-binding protein Hfq helps sRNAs associate with target mRNAs to modulate their translation and to...

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Chihara K, Bischler T, Barquist L, et al. Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing. mSystems. 2019;4(6)doi: 10.1128/mSystems.00590-19.
Chihara, K., Bischler, T., Barquist, L., Monzon, V. A., Noda, N., Vogel, J., & Tsuneda, S. (2019). Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing. mSystems, 4(6), . https://doi.org/10.1128/mSystems.00590-19
Chihara, Kotaro, et al. "Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing." mSystems vol. 4,6 (2019). doi: https://doi.org/10.1128/mSystems.00590-19
Chihara K, Bischler T, Barquist L, Monzon VA, Noda N, Vogel J, Tsuneda S. Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing. mSystems. 2019 Dec 03;4(6). doi: 10.1128/mSystems.00590-19. PMID: 31796567; PMCID: PMC6890931.
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Comparative genomics provides structural and functional insights into Bacteroides RNA biology.

Molecular microbiology

Prezza G, Ryan D, Mädler G, Reichardt S, Barquist L, Westermann AJ.
PMID: 34379855
Mol Microbiol. 2021 Aug 11; doi: 10.1111/mmi.14793. Epub 2021 Aug 11.

Bacteria employ noncoding RNA molecules for a wide range of biological processes, including scaffolding large molecular complexes, catalyzing chemical reactions, defending against phages, and controlling gene expression. Secondary structures, binding partners, and molecular mechanisms have been determined for numerous...

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Prezza G, Ryan D, Mädler G, et al. Comparative genomics provides structural and functional insights into Bacteroides RNA biology. Mol Microbiol. 2021;doi: 10.1111/mmi.14793.
Prezza, G., Ryan, D., Mädler, G., Reichardt, S., Barquist, L., & Westermann, A. J. (2021). Comparative genomics provides structural and functional insights into Bacteroides RNA biology. Molecular microbiology, . https://doi.org/10.1111/mmi.14793
Prezza, Gianluca, et al. "Comparative genomics provides structural and functional insights into Bacteroides RNA biology." Molecular microbiology vol. (2021). doi: https://doi.org/10.1111/mmi.14793
Prezza G, Ryan D, Mädler G, Reichardt S, Barquist L, Westermann AJ. Comparative genomics provides structural and functional insights into Bacteroides RNA biology. Mol Microbiol. 2021 Aug 11; doi: 10.1111/mmi.14793. Epub 2021 Aug 11. PMID: 34379855.
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Anomalous Damping of a Microelectromechanical Oscillator in Superfluid ^{3}He-B.

Physical review letters

Zheng P, Jiang WG, Barquist CS, Lee Y, Chan HB.
PMID: 27858447
Phys Rev Lett. 2016 Nov 04;117(19):195301. doi: 10.1103/PhysRevLett.117.195301. Epub 2016 Nov 04.

The mechanical resonance properties of a microelectromechanical oscillator with a gap of 1.25  μm was studied in superfluid ^{3}He-B at various pressures. The oscillator was driven in the linear damping regime where the damping coefficient is independent of the...

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Zheng P, Jiang WG, Barquist CS, et al. Anomalous Damping of a Microelectromechanical Oscillator in Superfluid ^{3}He-B. Phys Rev Lett. 2016;117(19):195301doi: 10.1103/PhysRevLett.117.195301.
Zheng, P., Jiang, W. G., Barquist, C. S., Lee, Y., & Chan, H. B. (2016). Anomalous Damping of a Microelectromechanical Oscillator in Superfluid ^{3}He-B. Physical review letters, 117(19), 195301. https://doi.org/10.1103/PhysRevLett.117.195301
Zheng, P, et al. "Anomalous Damping of a Microelectromechanical Oscillator in Superfluid ^{3}He-B." Physical review letters vol. 117,19 (2016): 195301. doi: https://doi.org/10.1103/PhysRevLett.117.195301
Zheng P, Jiang WG, Barquist CS, Lee Y, Chan HB. Anomalous Damping of a Microelectromechanical Oscillator in Superfluid ^{3}He-B. Phys Rev Lett. 2016 Nov 04;117(19):195301. doi: 10.1103/PhysRevLett.117.195301. Epub 2016 Nov 04. PMID: 27858447.
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Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development.

Journal of chemical theory and computation

Smith DGA, Burns LA, Sirianni DA, Nascimento DR, Kumar A, James AM, Schriber JB, Zhang T, Zhang B, Abbott AS, Berquist EJ, Lechner MH, Cunha LA, Heide AG, Waldrop JM, Takeshita TY, Alenaizan A, Neuhauser D, King RA, Simmonett AC, Turney JM, Schaefer HF, Evangelista FA, DePrince AE, Crawford TD, Patkowski K, Sherrill CD.
PMID: 29771539
J Chem Theory Comput. 2018 Jul 10;14(7):3504-3511. doi: 10.1021/acs.jctc.8b00286. Epub 2018 Jun 11.

Psi4NumPy demonstrates the use of efficient computational kernels from the open-source Psi4 program through the popular NumPy library for linear algebra in Python to facilitate the rapid development of clear, understandable Python computer code for new quantum chemical methods,...

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Smith DGA, Burns LA, Sirianni DA, et al. Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development. J Chem Theory Comput. 2018;14(7):3504-3511doi: 10.1021/acs.jctc.8b00286.
Smith, D. G. A., Burns, L. A., Sirianni, D. A., Nascimento, D. R., Kumar, A., James, A. M., Schriber, J. B., Zhang, T., Zhang, B., Abbott, A. S., Berquist, E. J., Lechner, M. H., Cunha, L. A., Heide, A. G., Waldrop, J. M., Takeshita, T. Y., Alenaizan, A., Neuhauser, D., King, R. A., Simmonett, A. C., Turney, J. M., Schaefer, H. F., Evangelista, F. A., DePrince, A. E., Crawford, T. D., Patkowski, K., & Sherrill, C. D. (2018). Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development. Journal of chemical theory and computation, 14(7), 3504-3511. https://doi.org/10.1021/acs.jctc.8b00286
Smith, Daniel G A, et al. "Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development." Journal of chemical theory and computation vol. 14,7 (2018): 3504-3511. doi: https://doi.org/10.1021/acs.jctc.8b00286
Smith DGA, Burns LA, Sirianni DA, Nascimento DR, Kumar A, James AM, Schriber JB, Zhang T, Zhang B, Abbott AS, Berquist EJ, Lechner MH, Cunha LA, Heide AG, Waldrop JM, Takeshita TY, Alenaizan A, Neuhauser D, King RA, Simmonett AC, Turney JM, Schaefer HF, Evangelista FA, DePrince AE, Crawford TD, Patkowski K, Sherrill CD. Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development. J Chem Theory Comput. 2018 Jul 10;14(7):3504-3511. doi: 10.1021/acs.jctc.8b00286. Epub 2018 Jun 11. PMID: 29771539.
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Plugging Small RNAs into the Network.

mSystems

Barquist L.
PMID: 32487744
mSystems. 2020 Jun 02;5(3). doi: 10.1128/mSystems.00422-20.

Small RNAs (sRNAs) have been discovered in every bacterium examined and have been shown to play important roles in the regulation of a diverse range of behaviors, from metabolism to infection. However, despite a wide range of available techniques...

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Barquist L. Plugging Small RNAs into the Network. mSystems. 2020;5(3)doi: 10.1128/mSystems.00422-20.
Barquist, L. (2020). Plugging Small RNAs into the Network. mSystems, 5(3), . https://doi.org/10.1128/mSystems.00422-20
Barquist, Lars. "Plugging Small RNAs into the Network." mSystems vol. 5,3 (2020). doi: https://doi.org/10.1128/mSystems.00422-20
Barquist L. Plugging Small RNAs into the Network. mSystems. 2020 Jun 02;5(3). doi: 10.1128/mSystems.00422-20. PMID: 32487744; PMCID: PMC8534730.
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Global identification of RsmA/N binding sites in .

RNA biology

Chihara K, Barquist L, Takasugi K, Noda N, Tsuneda S.
PMID: 33866926
RNA Biol. 2021 Dec;18(12):2401-2416. doi: 10.1080/15476286.2021.1917184. Epub 2021 Apr 27.

No abstract available.

Cite
Chihara K, Barquist L, Takasugi K, et al. Global identification of RsmA/N binding sites in . RNA Biol. 2021;18(12):2401-2416doi: 10.1080/15476286.2021.1917184.
Chihara, K., Barquist, L., Takasugi, K., Noda, N., & Tsuneda, S. (2021). Global identification of RsmA/N binding sites in . RNA biology, 18(12), 2401-2416. https://doi.org/10.1080/15476286.2021.1917184
Chihara, Kotaro, et al. "Global identification of RsmA/N binding sites in ." RNA biology vol. 18,12 (2021): 2401-2416. doi: https://doi.org/10.1080/15476286.2021.1917184
Chihara K, Barquist L, Takasugi K, Noda N, Tsuneda S. Global identification of RsmA/N binding sites in . RNA Biol. 2021 Dec;18(12):2401-2416. doi: 10.1080/15476286.2021.1917184. Epub 2021 Apr 27. PMID: 33866926; PMCID: PMC8632088.
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CH Mode Mixing Determines the Band Shape of the Carboxylate Symmetric Stretch in Apo-EDTA, Ca.

The journal of physical chemistry. A

Mitra S, Werling K, Berquist EJ, Lambrecht DS, Garrett-Roe S.
PMID: 34042451
J Phys Chem A. 2021 Jun 10;125(22):4867-4881. doi: 10.1021/acs.jpca.1c03061. Epub 2021 May 27.

The infrared spectra of EDTA complexed with Ca

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Mitra S, Werling K, Berquist EJ, et al. CH Mode Mixing Determines the Band Shape of the Carboxylate Symmetric Stretch in Apo-EDTA, Ca. J Phys Chem A. 2021;125(22):4867-4881doi: 10.1021/acs.jpca.1c03061.
Mitra, S., Werling, K., Berquist, E. J., Lambrecht, D. S., & Garrett-Roe, S. (2021). CH Mode Mixing Determines the Band Shape of the Carboxylate Symmetric Stretch in Apo-EDTA, Ca. The journal of physical chemistry. A, 125(22), 4867-4881. https://doi.org/10.1021/acs.jpca.1c03061
Mitra, Sunayana, et al. "CH Mode Mixing Determines the Band Shape of the Carboxylate Symmetric Stretch in Apo-EDTA, Ca." The journal of physical chemistry. A vol. 125,22 (2021): 4867-4881. doi: https://doi.org/10.1021/acs.jpca.1c03061
Mitra S, Werling K, Berquist EJ, Lambrecht DS, Garrett-Roe S. CH Mode Mixing Determines the Band Shape of the Carboxylate Symmetric Stretch in Apo-EDTA, Ca. J Phys Chem A. 2021 Jun 10;125(22):4867-4881. doi: 10.1021/acs.jpca.1c03061. Epub 2021 May 27. PMID: 34042451.
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Ultrafast vibrational spectroscopy (2D-IR) of CO2 in ionic liquids: Carbon capture from carbon dioxide's point of view.

The Journal of chemical physics

Brinzer T, Berquist EJ, Ren Z, Dutta S, Johnson CA, Krisher CS, Lambrecht DS, Garrett-Roe S.
PMID: 26049445
J Chem Phys. 2015 Jun 07;142(21):212425. doi: 10.1063/1.4917467.

The CO2ν3 asymmetric stretching mode is established as a vibrational chromophore for ultrafast two-dimensional infrared (2D-IR) spectroscopic studies of local structure and dynamics in ionic liquids, which are of interest for carbon capture applications. CO2 is dissolved in a...

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Brinzer T, Berquist EJ, Ren Z, et al. Ultrafast vibrational spectroscopy (2D-IR) of CO2 in ionic liquids: Carbon capture from carbon dioxide's point of view. J Chem Phys. 2015;142(21):212425doi: 10.1063/1.4917467.
Brinzer, T., Berquist, E. J., Ren, Z., Dutta, S., Johnson, C. A., Krisher, C. S., Lambrecht, D. S., & Garrett-Roe, S. (2015). Ultrafast vibrational spectroscopy (2D-IR) of CO2 in ionic liquids: Carbon capture from carbon dioxide's point of view. The Journal of chemical physics, 142(21), 212425. https://doi.org/10.1063/1.4917467
Brinzer, Thomas, et al. "Ultrafast vibrational spectroscopy (2D-IR) of CO2 in ionic liquids: Carbon capture from carbon dioxide's point of view." The Journal of chemical physics vol. 142,21 (2015): 212425. doi: https://doi.org/10.1063/1.4917467
Brinzer T, Berquist EJ, Ren Z, Dutta S, Johnson CA, Krisher CS, Lambrecht DS, Garrett-Roe S. Ultrafast vibrational spectroscopy (2D-IR) of CO2 in ionic liquids: Carbon capture from carbon dioxide's point of view. J Chem Phys. 2015 Jun 07;142(21):212425. doi: 10.1063/1.4917467. PMID: 26049445.
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Showing 1 to 12 of 23 entries