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The protein data bank

program design

Berman HM, Westbrook J.
GSID: VMfoNAL8TkcJ
HM Berman, J Westbrook, Z Feng… - Nucleic acids …, 2000 - academic.oup.com

Abstract The Protein Data Bank (PDB; http://www. rcsb. org/pdb/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the goals of …

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Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., ... & Bourne, P. E. (2000). The protein data bank. Nucleic acids research, 28(1), 235-242.
Berman, Helen M., et al. "The protein data bank." Nucleic acids research 28.1 (2000): 235-242.
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Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts.

Academic medicine : journal of the Association of American Medical Colleges

Antman KH, Berman HA, Flotte TR, Flier J, Dimitri DM, Bharel M.
PMID: 27532868
Acad Med. 2016 Oct;91(10):1348-1351. doi: 10.1097/ACM.0000000000001347.

Drug overdose has become the leading cause of injury death in the United States. More than half of those deaths involve prescription drugs, specifically opioids. A key component of addressing this national epidemic is improving prescriber practices.A review of...

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Antman KH, Berman HA, Flotte TR, et al. Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts. Acad Med. 2016;91(10):1348-1351doi: 10.1097/ACM.0000000000001347.
Antman, K. H., Berman, H. A., Flotte, T. R., Flier, J., Dimitri, D. M., & Bharel, M. (2016). Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts. Academic medicine : journal of the Association of American Medical Colleges, 91(10), 1348-1351. https://doi.org/10.1097/ACM.0000000000001347
Antman, Karen H, et al. "Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts." Academic medicine : journal of the Association of American Medical Colleges vol. 91,10 (2016): 1348-1351. doi: https://doi.org/10.1097/ACM.0000000000001347
Antman KH, Berman HA, Flotte TR, Flier J, Dimitri DM, Bharel M. Developing Core Competencies for the Prevention and Management of Prescription Drug Misuse: A Medical Education Collaboration in Massachusetts. Acad Med. 2016 Oct;91(10):1348-1351. doi: 10.1097/ACM.0000000000001347. PMID: 27532868.
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Supervoltage roentgenography.

The American journal of roentgenology, radium therapy, and nuclear medicine

McDONNEL GM, BERMAN HL, LODMELL EA.
PMID: 13498223
Am J Roentgenol Radium Ther Nucl Med. 1958 Feb;79(2):306-20.

No abstract available.

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McDONNEL GM, BERMAN HL, LODMELL EA. Supervoltage roentgenography. Am J Roentgenol Radium Ther Nucl Med. 1958;79(2):306-20
McDONNEL, G. M., BERMAN, H. L., & LODMELL, E. A. (1958). Supervoltage roentgenography. The American journal of roentgenology, radium therapy, and nuclear medicine, 79(2), 306-20.
McDONNEL, G M, et al. "Supervoltage roentgenography." The American journal of roentgenology, radium therapy, and nuclear medicine vol. 79,2 (1958): 306-20.
McDONNEL GM, BERMAN HL, LODMELL EA. Supervoltage roentgenography. Am J Roentgenol Radium Ther Nucl Med. 1958 Feb;79(2):306-20. PMID: 13498223.
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Biological control of crystal texture: a widespread strategy for adapting crystal properties to function.

Science (New York, N.Y.)

Berman A, Hanson J, Leiserowitz L, Koetzle TF, Weiner S, Addadi L.
PMID: 17809339
Science. 1993 Feb 05;259(5096):776-9. doi: 10.1126/science.259.5096.776.

Textures of calcite crystals from a variety of mineralized tissues belonging to organisms from four phyla were examined with high-resolution synchrotron x-ray radiation. Significant differences in coherence length and angular spread were observed between taxonomic groups. Crystals from polycrystalline...

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Berman A, Hanson J, Leiserowitz L, et al. Biological control of crystal texture: a widespread strategy for adapting crystal properties to function. Science. 1993;259(5096):776-9doi: 10.1126/science.259.5096.776.
Berman, A., Hanson, J., Leiserowitz, L., Koetzle, T. F., Weiner, S., & Addadi, L. (1993). Biological control of crystal texture: a widespread strategy for adapting crystal properties to function. Science (New York, N.Y.), 259(5096), 776-9. https://doi.org/10.1126/science.259.5096.776
Berman, A, et al. "Biological control of crystal texture: a widespread strategy for adapting crystal properties to function." Science (New York, N.Y.) vol. 259,5096 (1993): 776-9. doi: https://doi.org/10.1126/science.259.5096.776
Berman A, Hanson J, Leiserowitz L, Koetzle TF, Weiner S, Addadi L. Biological control of crystal texture: a widespread strategy for adapting crystal properties to function. Science. 1993 Feb 05;259(5096):776-9. doi: 10.1126/science.259.5096.776. PMID: 17809339.
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Structural failure of a Starr-Edwards aortic track valve.

Texas Heart Institute journal

Ringel RE, Moulton AL, Burns JE, Brenner JI, Berman MA.
PMID: 15227160
Tex Heart Inst J. 1983 Mar;10(1):81-3.

Structural failure of a Model 2400 Starr-Edwards aortic track valve occurred suddenly, 4 years after implantation. At operation, the valve cage was removed from the descending aorta. Examination of the excised prosthesis disclosed minimal cloth wear and no evidence...

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Ringel RE, Moulton AL, Burns JE, et al. Structural failure of a Starr-Edwards aortic track valve. Tex Heart Inst J. 1983;10(1):81-3
Ringel, R. E., Moulton, A. L., Burns, J. E., Brenner, J. I., & Berman, M. A. (1983). Structural failure of a Starr-Edwards aortic track valve. Texas Heart Institute journal, 10(1), 81-3.
Ringel, R E, et al. "Structural failure of a Starr-Edwards aortic track valve." Texas Heart Institute journal vol. 10,1 (1983): 81-3.
Ringel RE, Moulton AL, Burns JE, Brenner JI, Berman MA. Structural failure of a Starr-Edwards aortic track valve. Tex Heart Inst J. 1983 Mar;10(1):81-3. PMID: 15227160; PMCID: PMC341611.
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Cloning of cDNA and prediction of peptide structure of Plzf expressed in the spermatogonial cells of Labeo rohita.

Marine genomics

Mohapatra C, Barman HK, Panda RP, Kumar S, Das V, Mohanta R, Mohapatra SD, Jayasankar P.
PMID: 21798210
Mar Genomics. 2010 Sep-Dec;3(3):157-63. doi: 10.1016/j.margen.2010.09.002. Epub 2010 Sep 28.

The promyelocytic leukemia zinc finger (Plzf) gene containing an evolutionary conserved BTB (bric-a-brac/tramtrack/broad complex) domain plays a key role in self-renewal of mammalian spermatogonial stem cells (SSCs) via recruiting transcriptional co-repressors. Little is known about the function of Plzf...

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Mohapatra C, Barman HK, Panda RP, et al. Cloning of cDNA and prediction of peptide structure of Plzf expressed in the spermatogonial cells of Labeo rohita. Mar Genomics. 2010;3(3):157-63doi: 10.1016/j.margen.2010.09.002.
Mohapatra, C., Barman, H. K., Panda, R. P., Kumar, S., Das, V., Mohanta, R., Mohapatra, S. D., & Jayasankar, P. (2010). Cloning of cDNA and prediction of peptide structure of Plzf expressed in the spermatogonial cells of Labeo rohita. Marine genomics, 3(3), 157-63. https://doi.org/10.1016/j.margen.2010.09.002
Mohapatra, Chinmayee, et al. "Cloning of cDNA and prediction of peptide structure of Plzf expressed in the spermatogonial cells of Labeo rohita." Marine genomics vol. 3,3 (2010): 157-63. doi: https://doi.org/10.1016/j.margen.2010.09.002
Mohapatra C, Barman HK, Panda RP, Kumar S, Das V, Mohanta R, Mohapatra SD, Jayasankar P. Cloning of cDNA and prediction of peptide structure of Plzf expressed in the spermatogonial cells of Labeo rohita. Mar Genomics. 2010 Sep-Dec;3(3):157-63. doi: 10.1016/j.margen.2010.09.002. Epub 2010 Sep 28. PMID: 21798210.
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The 2010 cryo-EM modeling challenge.

Biopolymers

Ludtke SJ, Lawson CL, Kleywegt GJ, Berman H, Chiu W.
PMID: 22696402
Biopolymers. 2012 Sep;97(9):651-4. doi: 10.1002/bip.22081.

No abstract available.

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Ludtke SJ, Lawson CL, Kleywegt GJ, et al. The 2010 cryo-EM modeling challenge. Biopolymers. 2012;97(9):651-4doi: 10.1002/bip.22081.
Ludtke, S. J., Lawson, C. L., Kleywegt, G. J., Berman, H., & Chiu, W. (2012). The 2010 cryo-EM modeling challenge. Biopolymers, 97(9), 651-4. https://doi.org/10.1002/bip.22081
Ludtke, Steven J, et al. "The 2010 cryo-EM modeling challenge." Biopolymers vol. 97,9 (2012): 651-4. doi: https://doi.org/10.1002/bip.22081
Ludtke SJ, Lawson CL, Kleywegt GJ, Berman H, Chiu W. The 2010 cryo-EM modeling challenge. Biopolymers. 2012 Sep;97(9):651-4. doi: 10.1002/bip.22081. PMID: 22696402.
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Hand Compartment Syndrome Due to .

Clinical practice and cases in emergency medicine

Thoppil J, Berman A, Kessler B, Sud P, Nogar J.
PMID: 29849372
Clin Pract Cases Emerg Med. 2017 Oct 18;1(4):377-379. doi: 10.5811/cpcem.2017.9.35152. eCollection 2017 Nov.

No abstract available.

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Thoppil J, Berman A, Kessler B, et al. Hand Compartment Syndrome Due to . Clin Pract Cases Emerg Med. 2017;1(4):377-379doi: 10.5811/cpcem.2017.9.35152.
Thoppil, J., Berman, A., Kessler, B., Sud, P., & Nogar, J. (2017). Hand Compartment Syndrome Due to . Clinical practice and cases in emergency medicine, 1(4), 377-379. https://doi.org/10.5811/cpcem.2017.9.35152
Thoppil, Joby, et al. "Hand Compartment Syndrome Due to ." Clinical practice and cases in emergency medicine vol. 1,4 (2017): 377-379. doi: https://doi.org/10.5811/cpcem.2017.9.35152
Thoppil J, Berman A, Kessler B, Sud P, Nogar J. Hand Compartment Syndrome Due to . Clin Pract Cases Emerg Med. 2017 Oct 18;1(4):377-379. doi: 10.5811/cpcem.2017.9.35152. eCollection 2017 Nov. PMID: 29849372; PMCID: PMC5965219.
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Internet-based cognitive behavior therapy for problem gambling in routine care: protocol for a non-randomized pilot and feasibility trial.

Pilot and feasibility studies

Molander O, Lindner P, Ramnerö J, Bjureberg J, Carlbring P, Berman AH.
PMID: 32699645
Pilot Feasibility Stud. 2020 Jul 21;6:106. doi: 10.1186/s40814-020-00647-5. eCollection 2020.

BACKGROUND: Problem gambling and gambling disorder are major public health concerns worldwide, and awareness of associated negative consequences is rising. In parallel, treatment demand has increased, and Internet interventions offer a promising alternative for providing evidence-based treatment at scale...

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Molander O, Lindner P, Ramnerö J, et al. Internet-based cognitive behavior therapy for problem gambling in routine care: protocol for a non-randomized pilot and feasibility trial. Pilot Feasibility Stud. 2020;6:106doi: 10.1186/s40814-020-00647-5.
Molander, O., Lindner, P., Ramnerö, J., Bjureberg, J., Carlbring, P., & Berman, A. H. (2020). Internet-based cognitive behavior therapy for problem gambling in routine care: protocol for a non-randomized pilot and feasibility trial. Pilot and feasibility studies, 6106. https://doi.org/10.1186/s40814-020-00647-5
Molander, Olof, et al. "Internet-based cognitive behavior therapy for problem gambling in routine care: protocol for a non-randomized pilot and feasibility trial." Pilot and feasibility studies vol. 6 (2020): 106. doi: https://doi.org/10.1186/s40814-020-00647-5
Molander O, Lindner P, Ramnerö J, Bjureberg J, Carlbring P, Berman AH. Internet-based cognitive behavior therapy for problem gambling in routine care: protocol for a non-randomized pilot and feasibility trial. Pilot Feasibility Stud. 2020 Jul 21;6:106. doi: 10.1186/s40814-020-00647-5. eCollection 2020. PMID: 32699645; PMCID: PMC7372781.
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Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas.

Nature genetics

Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Izsvák Z, Lupien M, Mak TW, Khokha R.
PMID: 32094913
Nat Genet. 2020 Apr;52(4):464. doi: 10.1038/s41588-020-0589-2.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Molyneux SD, Waterhouse PD, Shelton D, et al. Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas. Nat Genet. 2020;52(4):464doi: 10.1038/s41588-020-0589-2.
Molyneux, S. D., Waterhouse, P. D., Shelton, D., Shao, Y. W., Watling, C. M., Tang, Q. L., Harris, I. S., Dickson, B. C., Tharmapalan, P., Sandve, G. K., Zhang, X., Bailey, S. D., Berman, H., Wunder, J. S., Izsvák, Z., Lupien, M., Mak, T. W., & Khokha, R. (2020). Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas. Nature genetics, 52(4), 464. https://doi.org/10.1038/s41588-020-0589-2
Molyneux, Sam D, et al. "Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas." Nature genetics vol. 52,4 (2020): 464. doi: https://doi.org/10.1038/s41588-020-0589-2
Molyneux SD, Waterhouse PD, Shelton D, Shao YW, Watling CM, Tang QL, Harris IS, Dickson BC, Tharmapalan P, Sandve GK, Zhang X, Bailey SD, Berman H, Wunder JS, Izsvák Z, Lupien M, Mak TW, Khokha R. Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas. Nat Genet. 2020 Apr;52(4):464. doi: 10.1038/s41588-020-0589-2. PMID: 32094913.
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Pediatric necrobiosis lipoidica: case report and review of the literature.

Dermatology online journal

Berman HS, Shabihkhani M, Hogeling M.
PMID: 34391328
Dermatol Online J. 2021 Jul 15;27(7). doi: 10.5070/D327754363.

Necrobiosis lipoidica (NL) is a rare, granulomatous disease considered to be associated with diabetes. It is frequently seen in female and middle-aged patients and is rarely observed in children. We present a 14-year-old boy with poorly controlled type 1...

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Berman HS, Shabihkhani M, Hogeling M. Pediatric necrobiosis lipoidica: case report and review of the literature. Dermatol Online J. 2021;27(7)doi: 10.5070/D327754363.
Berman, H. S., Shabihkhani, M., & Hogeling, M. (2021). Pediatric necrobiosis lipoidica: case report and review of the literature. Dermatology online journal, 27(7), . https://doi.org/10.5070/D327754363
Berman, Hannah S, et al. "Pediatric necrobiosis lipoidica: case report and review of the literature." Dermatology online journal vol. 27,7 (2021). doi: https://doi.org/10.5070/D327754363
Berman HS, Shabihkhani M, Hogeling M. Pediatric necrobiosis lipoidica: case report and review of the literature. Dermatol Online J. 2021 Jul 15;27(7). doi: 10.5070/D327754363. PMID: 34391328.
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External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories.

Journal of clinical microbiology

Wegner F, Roloff T, Huber M, Cordey S, Ramette A, Gerth Y, Bertelli C, Stange M, Seth-Smith HMB, Mari A, Leuzinger K, Cerutti L, Harshman K, Xenarios I, Le Mercier P, Bittel P, Neuenschwander S, Opota O, Fuchs J, Panning M, Michel C, Hallin M, Demuyser T, De Mendonca R, Savelkoul P, Dingemans J, van der Veer B, Boers SA, Claas ECJ, Coolen JPM, Melchers WJG, Gunell M, Kallonen T, Vuorinen T, Hakanen AJ, Bernhoff E, Hetland MAK, Berman HG, Adar S, Moran-Gilad J, Wolf DG, Leib SL, Nolte O, Kaiser L, Schmutz S, Kufner V, Zaheri M, Trkola A, Aamot HV, Hirsch HH, Greub G, Egli A.
PMID: 34757834
J Clin Microbiol. 2021 Nov 10;JCM0169821. doi: 10.1128/JCM.01698-21. Epub 2021 Nov 10.

OBJECTIVE: This first pilot on external quality assessment (EQA) of SARS-CoV-2 whole genome sequencing, initiated by the ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD) and Swiss Society for Microbiology (SSM), aims to build a framework between laboratories...

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Wegner F, Roloff T, Huber M, et al. External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. J Clin Microbiol. 2021;JCM0169821doi: 10.1128/JCM.01698-21.
Wegner, F., Roloff, T., Huber, M., Cordey, S., Ramette, A., Gerth, Y., Bertelli, C., Stange, M., Seth-Smith, H. M. B., Mari, A., Leuzinger, K., Cerutti, L., Harshman, K., Xenarios, I., Le Mercier, P., Bittel, P., Neuenschwander, S., Opota, O., Fuchs, J., Panning, M., Michel, C., Hallin, M., Demuyser, T., De Mendonca, R., Savelkoul, P., Dingemans, J., van der Veer, B., Boers, S. A., Claas, E. C. J., Coolen, J. P. M., Melchers, W. J. G., Gunell, M., Kallonen, T., Vuorinen, T., Hakanen, A. J., Bernhoff, E., Hetland, M. A. K., Berman, H. G., Adar, S., Moran-Gilad, J., Wolf, D. G., Leib, S. L., Nolte, O., Kaiser, L., Schmutz, S., Kufner, V., Zaheri, M., Trkola, A., Aamot, H. V., Hirsch, H. H., Greub, G., & Egli, A. (2021). External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. Journal of clinical microbiology, JCM0169821. https://doi.org/10.1128/JCM.01698-21
Wegner, Fanny, et al. "External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories." Journal of clinical microbiology vol. (2021): JCM0169821. doi: https://doi.org/10.1128/JCM.01698-21
Wegner F, Roloff T, Huber M, Cordey S, Ramette A, Gerth Y, Bertelli C, Stange M, Seth-Smith HMB, Mari A, Leuzinger K, Cerutti L, Harshman K, Xenarios I, Le Mercier P, Bittel P, Neuenschwander S, Opota O, Fuchs J, Panning M, Michel C, Hallin M, Demuyser T, De Mendonca R, Savelkoul P, Dingemans J, van der Veer B, Boers SA, Claas ECJ, Coolen JPM, Melchers WJG, Gunell M, Kallonen T, Vuorinen T, Hakanen AJ, Bernhoff E, Hetland MAK, Berman HG, Adar S, Moran-Gilad J, Wolf DG, Leib SL, Nolte O, Kaiser L, Schmutz S, Kufner V, Zaheri M, Trkola A, Aamot HV, Hirsch HH, Greub G, Egli A. External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. J Clin Microbiol. 2021 Nov 10;JCM0169821. doi: 10.1128/JCM.01698-21. Epub 2021 Nov 10. PMID: 34757834.
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Showing 1 to 12 of 190 entries