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Reconstructing atom probe data: a review.

Ultramicroscopy

Vurpillot F, Gault B, Geiser BP, Larson DJ.
PMID: 23607993
Ultramicroscopy. 2013 Sep;132:19-30. doi: 10.1016/j.ultramic.2013.03.010. Epub 2013 Mar 26.

Atom probe tomography stands out from other materials characterisation techniques mostly due to its capacity to map individual atoms in three-dimensions with high spatial resolution. The methods used to transform raw detector data into a three-dimensional reconstruction have, comparatively...

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Vurpillot F, Gault B, Geiser BP, et al. Reconstructing atom probe data: a review. Ultramicroscopy. 2013;132:19-30doi: 10.1016/j.ultramic.2013.03.010.
Vurpillot, F., Gault, B., Geiser, B. P., & Larson, D. J. (2013). Reconstructing atom probe data: a review. Ultramicroscopy, 13219-30. https://doi.org/10.1016/j.ultramic.2013.03.010
Vurpillot, Francois, et al. "Reconstructing atom probe data: a review." Ultramicroscopy vol. 132 (2013): 19-30. doi: https://doi.org/10.1016/j.ultramic.2013.03.010
Vurpillot F, Gault B, Geiser BP, Larson DJ. Reconstructing atom probe data: a review. Ultramicroscopy. 2013 Sep;132:19-30. doi: 10.1016/j.ultramic.2013.03.010. Epub 2013 Mar 26. PMID: 23607993.
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High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.

Standards in genomic sciences

Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP.
PMID: 26925197
Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016.

Thermus amyloliquefaciens type strain YIM 77409(T) is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, southwest China. In the present study we describe the features of strain YIM 77409(T) together...

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Zhou EM, Murugapiran SK, Mefferd CC, et al. High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Stand Genomic Sci. 2016;11:20doi: 10.1186/s40793-016-0140-3.
Zhou, E. M., Murugapiran, S. K., Mefferd, C. C., Liu, L., Xian, W. D., Yin, Y. R., Ming, H., Yu, T. T., Huntemann, M., Clum, A., Pillay, M., Palaniappan, K., Varghese, N., Mikhailova, N., Stamatis, D., Reddy, T. B., Ngan, C. Y., Daum, C., Shapiro, N., Markowitz, V., Ivanova, N., Spunde, A., Kyrpides, N., Woyke, T., Li, W. J., & Hedlund, B. P. (2016). High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Standards in genomic sciences, 1120. https://doi.org/10.1186/s40793-016-0140-3
Zhou, En-Min, et al. "High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway." Standards in genomic sciences vol. 11 (2016): 20. doi: https://doi.org/10.1186/s40793-016-0140-3
Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP. High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Stand Genomic Sci. 2016 Feb 27;11:20. doi: 10.1186/s40793-016-0140-3. eCollection 2016. PMID: 26925197; PMCID: PMC4769583.
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Risk Factors for Disease Progression After Postprostatectomy Salvage Radiation: Long-term Results of a Single-institution Experience.

Clinical genitourinary cancer

Rodin D, Drumm M, Clayman R, Buscariollo DL, Galland-Girodet S, Eidelman A, Feldman AS, Dahl DM, McGovern FJ, Olumi AF, Niemierko A, Shipley WU, Zietman AL, Efstathiou JA.
PMID: 28864223
Clin Genitourin Cancer. 2017 Aug 03; doi: 10.1016/j.clgc.2017.07.026. Epub 2017 Aug 03.

BACKGROUND: Salvage radiotherapy (SRT) has been successfully used for recurrent prostate cancer after radical prostatectomy; however, the optimal timing of SRT remains controversial. Our objective was to identify the risk factors for disease progression after SRT, with a focus...

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Rodin D, Drumm M, Clayman R, et al. Risk Factors for Disease Progression After Postprostatectomy Salvage Radiation: Long-term Results of a Single-institution Experience. Clin Genitourin Cancer. 2017;doi: 10.1016/j.clgc.2017.07.026.
Rodin, D., Drumm, M., Clayman, R., Buscariollo, D. L., Galland-Girodet, S., Eidelman, A., Feldman, A. S., Dahl, D. M., McGovern, F. J., Olumi, A. F., Niemierko, A., Shipley, W. U., Zietman, A. L., & Efstathiou, J. A. (2017). Risk Factors for Disease Progression After Postprostatectomy Salvage Radiation: Long-term Results of a Single-institution Experience. Clinical genitourinary cancer, . https://doi.org/10.1016/j.clgc.2017.07.026
Rodin, Danielle, et al. "Risk Factors for Disease Progression After Postprostatectomy Salvage Radiation: Long-term Results of a Single-institution Experience." Clinical genitourinary cancer vol. (2017). doi: https://doi.org/10.1016/j.clgc.2017.07.026
Rodin D, Drumm M, Clayman R, Buscariollo DL, Galland-Girodet S, Eidelman A, Feldman AS, Dahl DM, McGovern FJ, Olumi AF, Niemierko A, Shipley WU, Zietman AL, Efstathiou JA. Risk Factors for Disease Progression After Postprostatectomy Salvage Radiation: Long-term Results of a Single-institution Experience. Clin Genitourin Cancer. 2017 Aug 03; doi: 10.1016/j.clgc.2017.07.026. Epub 2017 Aug 03. PMID: 28864223.
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Cartilage Degeneration, Subchondral Mineral and Meniscal Mineral Densities in Hartley and Strain 13 Guinea Pigs.

The open rheumatology journal

Sun Y, Scannell BP, Honeycutt PR, Mauerhan DR, H JN, Hanley EN.
PMID: 26401159
Open Rheumatol J. 2015 Sep 15;9:65-70. doi: 10.2174/1874312901409010065. eCollection 2015.

Osteoarthritis is a joint disease involved in articular cartilage, subchondral bone, meniscus and synovial membrane. This study sought to examine cartilage degeneration, subchondral bone mineral density (BMD) and meniscal mineral density (MD) in male Hartley, female Hartley and female...

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Sun Y, Scannell BP, Honeycutt PR, et al. Cartilage Degeneration, Subchondral Mineral and Meniscal Mineral Densities in Hartley and Strain 13 Guinea Pigs. Open Rheumatol J. 2015;9:65-70doi: 10.2174/1874312901409010065.
Sun, Y., Scannell, B. P., Honeycutt, P. R., Mauerhan, D. R., H, J. N., & Hanley, E. N. (2015). Cartilage Degeneration, Subchondral Mineral and Meniscal Mineral Densities in Hartley and Strain 13 Guinea Pigs. The open rheumatology journal, 965-70. https://doi.org/10.2174/1874312901409010065
Sun, Yubo, et al. "Cartilage Degeneration, Subchondral Mineral and Meniscal Mineral Densities in Hartley and Strain 13 Guinea Pigs." The open rheumatology journal vol. 9 (2015): 65-70. doi: https://doi.org/10.2174/1874312901409010065
Sun Y, Scannell BP, Honeycutt PR, Mauerhan DR, H JN, Hanley EN. Cartilage Degeneration, Subchondral Mineral and Meniscal Mineral Densities in Hartley and Strain 13 Guinea Pigs. Open Rheumatol J. 2015 Sep 15;9:65-70. doi: 10.2174/1874312901409010065. eCollection 2015. PMID: 26401159; PMCID: PMC4578142.
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Anxiety but not depression is associated with metabolic syndrome: The Isfahan Healthy Heart Program.

Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences

Akbari H, Sarrafzadegan N, Aria H, Garaei AG, Zakeri H.
PMID: 28919917
J Res Med Sci. 2017 Jul 28;22:90. doi: 10.4103/jrms.JRMS_288_16. eCollection 2017.

BACKGROUND: Only a few studies have carried out to evaluate the association of depression and anxiety with metabolic syndrome (MetS). The aim of this study was to investigate whether the depression and anxiety are associated with MetS and its...

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Akbari H, Sarrafzadegan N, Aria H, et al. Anxiety but not depression is associated with metabolic syndrome: The Isfahan Healthy Heart Program. J Res Med Sci. 2017;22:90doi: 10.4103/jrms.JRMS_288_16.
Akbari, H., Sarrafzadegan, N., Aria, H., Garaei, A. G., & Zakeri, H. (2017). Anxiety but not depression is associated with metabolic syndrome: The Isfahan Healthy Heart Program. Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences, 2290. https://doi.org/10.4103/jrms.JRMS_288_16
Akbari, Hamed, et al. "Anxiety but not depression is associated with metabolic syndrome: The Isfahan Healthy Heart Program." Journal of research in medical sciences : the official journal of Isfahan University of Medical Sciences vol. 22 (2017): 90. doi: https://doi.org/10.4103/jrms.JRMS_288_16
Akbari H, Sarrafzadegan N, Aria H, Garaei AG, Zakeri H. Anxiety but not depression is associated with metabolic syndrome: The Isfahan Healthy Heart Program. J Res Med Sci. 2017 Jul 28;22:90. doi: 10.4103/jrms.JRMS_288_16. eCollection 2017. PMID: 28919917; PMCID: PMC5553241.
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The Emerging Therapeutic Role of Medical Foods for Gastrointestinal Disorders.

Gastroenterology & hepatology

Ciampa BP, Reyes Ramos E, Borum M, Doman DB.
PMID: 28450817
Gastroenterol Hepatol (N Y). 2017 Feb;13(2):104-115.

In addition to drugs approved by the US Food and Drug Administration (FDA) that treat, cure, or mitigate disease, medical foods are a tool to help manage chronic conditions and diseases. A medical food, according to the FDA, is...

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Ciampa BP, Reyes Ramos E, Borum M, et al. The Emerging Therapeutic Role of Medical Foods for Gastrointestinal Disorders. Gastroenterol Hepatol (N Y). 2017;13(2):104-115
Ciampa, B. P., Reyes Ramos, E., Borum, M., & Doman, D. B. (2017). The Emerging Therapeutic Role of Medical Foods for Gastrointestinal Disorders. Gastroenterology & hepatology, 13(2), 104-115.
Ciampa, Brian P, et al. "The Emerging Therapeutic Role of Medical Foods for Gastrointestinal Disorders." Gastroenterology & hepatology vol. 13,2 (2017): 104-115.
Ciampa BP, Reyes Ramos E, Borum M, Doman DB. The Emerging Therapeutic Role of Medical Foods for Gastrointestinal Disorders. Gastroenterol Hepatol (N Y). 2017 Feb;13(2):104-115. PMID: 28450817; PMCID: PMC5402682.
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Exploring Heteroaryl-pyrazole Carboxylic Acids as Human Carbonic Anhydrase XII Inhibitors.

ACS medicinal chemistry letters

Cadoni R, Pala N, Lomelino C, Mahon BP, McKenna R, Dallocchio R, Dessì A, Carcelli M, Rogolino D, Sanna V, Rassu M, Iaccarino C, Vullo D, Supuran CT, Sechi M.
PMID: 28947941
ACS Med Chem Lett. 2017 Jul 31;8(9):941-946. doi: 10.1021/acsmedchemlett.7b00229. eCollection 2017 Sep 14.

We report the synthesis, biological evaluation, and structural study of a series of substituted heteroaryl-pyrazole carboxylic acid derivatives. These compounds have been developed as inhibitors of specific isoforms of carbonic anhydrase (CA), with potential as prototypes of a new...

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Cadoni R, Pala N, Lomelino C, et al. Exploring Heteroaryl-pyrazole Carboxylic Acids as Human Carbonic Anhydrase XII Inhibitors. ACS Med Chem Lett. 2017;8(9):941-946doi: 10.1021/acsmedchemlett.7b00229.
Cadoni, R., Pala, N., Lomelino, C., Mahon, B. P., McKenna, R., Dallocchio, R., Dessì, A., Carcelli, M., Rogolino, D., Sanna, V., Rassu, M., Iaccarino, C., Vullo, D., Supuran, C. T., & Sechi, M. (2017). Exploring Heteroaryl-pyrazole Carboxylic Acids as Human Carbonic Anhydrase XII Inhibitors. ACS medicinal chemistry letters, 8(9), 941-946. https://doi.org/10.1021/acsmedchemlett.7b00229
Cadoni, Roberta, et al. "Exploring Heteroaryl-pyrazole Carboxylic Acids as Human Carbonic Anhydrase XII Inhibitors." ACS medicinal chemistry letters vol. 8,9 (2017): 941-946. doi: https://doi.org/10.1021/acsmedchemlett.7b00229
Cadoni R, Pala N, Lomelino C, Mahon BP, McKenna R, Dallocchio R, Dessì A, Carcelli M, Rogolino D, Sanna V, Rassu M, Iaccarino C, Vullo D, Supuran CT, Sechi M. Exploring Heteroaryl-pyrazole Carboxylic Acids as Human Carbonic Anhydrase XII Inhibitors. ACS Med Chem Lett. 2017 Jul 31;8(9):941-946. doi: 10.1021/acsmedchemlett.7b00229. eCollection 2017 Sep 14. PMID: 28947941; PMCID: PMC5601383.
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Dilemmas in Endoscopic Management of Rectal Neuroendocrine Tumors: A Case-Based Discussion.

Gastroenterology research and practice

Rajca BP, Wagh MS.
PMID: 26346026
Gastroenterol Res Pract. 2015;2015:539861. doi: 10.1155/2015/539861. Epub 2015 Aug 05.

Rectal neuroendocrine tumors are uncommon neoplasms that historically were regarded as having an indolent course. Due to the widespread use of screening colonoscopy neuroendocrine tumors of the rectum are identified with increasing frequency. More recent literature has suggested that...

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Rajca BP, Wagh MS. Dilemmas in Endoscopic Management of Rectal Neuroendocrine Tumors: A Case-Based Discussion. Gastroenterol Res Pract. 2015;2015:539861doi: 10.1155/2015/539861.
Rajca, B. P., & Wagh, M. S. (2015). Dilemmas in Endoscopic Management of Rectal Neuroendocrine Tumors: A Case-Based Discussion. Gastroenterology research and practice, 2015539861. https://doi.org/10.1155/2015/539861
Rajca, Brian P, and Wagh, Mihir S. "Dilemmas in Endoscopic Management of Rectal Neuroendocrine Tumors: A Case-Based Discussion." Gastroenterology research and practice vol. 2015 (2015): 539861. doi: https://doi.org/10.1155/2015/539861
Rajca BP, Wagh MS. Dilemmas in Endoscopic Management of Rectal Neuroendocrine Tumors: A Case-Based Discussion. Gastroenterol Res Pract. 2015;2015:539861. doi: 10.1155/2015/539861. Epub 2015 Aug 05. PMID: 26346026; PMCID: PMC4541008.
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Corrigendum: A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate.

Nature chemical biology

Pacold ME, Brimacombe KR, Chan SH, Rohde JM, Lewis CA, Swier LJ, Possemato R, Chen WW, Sullivan LB, Fiske BP, Cho S, Freinkman E, Birsoy K, Abu MR, Shaul YD, Liu CM, Zhou M, Koh MJ, Chung H, Davidson SM, Luengo A, Wang AQ, Xu X, Yasgar A, Liu L, Rai G, Westover KD, Heiden MG, Shen M, Gray NS, Boxer MB, Sabatini DM.
PMID: 27434767
Nat Chem Biol. 2016 Jul 19;12(8):656. doi: 10.1038/nchembio0816-656.

No abstract available.

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Pacold ME, Brimacombe KR, Chan SH, et al. Corrigendum: A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate. Nat Chem Biol. 2016;12(8):656doi: 10.1038/nchembio0816-656.
Pacold, M. E., Brimacombe, K. R., Chan, S. H., Rohde, J. M., Lewis, C. A., Swier, L. J., Possemato, R., Chen, W. W., Sullivan, L. B., Fiske, B. P., Cho, S., Freinkman, E., Birsoy, K., Abu, M. R., Shaul, Y. D., Liu, C. M., Zhou, M., Koh, M. J., Chung, H., Davidson, S. M., Luengo, A., Wang, A. Q., Xu, X., Yasgar, A., Liu, L., Rai, G., Westover, K. D., Heiden, M. G., Shen, M., Gray, N. S., Boxer, M. B., & Sabatini, D. M. (2016). Corrigendum: A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate. Nature chemical biology, 12(8), 656. https://doi.org/10.1038/nchembio0816-656
Pacold, Michael E, et al. "Corrigendum: A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate." Nature chemical biology vol. 12,8 (2016): 656. doi: https://doi.org/10.1038/nchembio0816-656
Pacold ME, Brimacombe KR, Chan SH, Rohde JM, Lewis CA, Swier LJ, Possemato R, Chen WW, Sullivan LB, Fiske BP, Cho S, Freinkman E, Birsoy K, Abu MR, Shaul YD, Liu CM, Zhou M, Koh MJ, Chung H, Davidson SM, Luengo A, Wang AQ, Xu X, Yasgar A, Liu L, Rai G, Westover KD, Heiden MG, Shen M, Gray NS, Boxer MB, Sabatini DM. Corrigendum: A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate. Nat Chem Biol. 2016 Jul 19;12(8):656. doi: 10.1038/nchembio0816-656. PMID: 27434767.
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The Impact of Instrument-Specific Musical Training on Rhythm Perception and Production.

Frontiers in psychology

Matthews TE, Thibodeau JN, Gunther BP, Penhune VB.
PMID: 26869969
Front Psychol. 2016 Feb 03;7:69. doi: 10.3389/fpsyg.2016.00069. eCollection 2016.

Studies comparing musicians and non-musicians have shown that musical training can improve rhythmic perception and production. These findings tell us that training can result in rhythm processing advantages, but they do not tell us whether practicing a particular instrument...

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Matthews TE, Thibodeau JN, Gunther BP, et al. The Impact of Instrument-Specific Musical Training on Rhythm Perception and Production. Front Psychol. 2016;7:69doi: 10.3389/fpsyg.2016.00069.
Matthews, T. E., Thibodeau, J. N., Gunther, B. P., & Penhune, V. B. (2016). The Impact of Instrument-Specific Musical Training on Rhythm Perception and Production. Frontiers in psychology, 769. https://doi.org/10.3389/fpsyg.2016.00069
Matthews, Tomas E, et al. "The Impact of Instrument-Specific Musical Training on Rhythm Perception and Production." Frontiers in psychology vol. 7 (2016): 69. doi: https://doi.org/10.3389/fpsyg.2016.00069
Matthews TE, Thibodeau JN, Gunther BP, Penhune VB. The Impact of Instrument-Specific Musical Training on Rhythm Perception and Production. Front Psychol. 2016 Feb 03;7:69. doi: 10.3389/fpsyg.2016.00069. eCollection 2016. PMID: 26869969; PMCID: PMC4737902.
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β.

Frontiers in pharmacology

Marek GJ, Ramos BP.
PMID: 29472863
Front Pharmacol. 2018 Feb 08;9:89. doi: 10.3389/fphar.2018.00089. eCollection 2018.

5-Hydroxytryptamine

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Marek GJ, Ramos BP. β. Front Pharmacol. 2018;9:89doi: 10.3389/fphar.2018.00089.
Marek, G. J., & Ramos, B. P. (2018). β. Frontiers in pharmacology, 989. https://doi.org/10.3389/fphar.2018.00089
Marek, Gerard J, and Ramos, Brian P. "β." Frontiers in pharmacology vol. 9 (2018): 89. doi: https://doi.org/10.3389/fphar.2018.00089
Marek GJ, Ramos BP. β. Front Pharmacol. 2018 Feb 08;9:89. doi: 10.3389/fphar.2018.00089. eCollection 2018. PMID: 29472863; PMCID: PMC5809958.
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Validation of Different Combination of Three Reversing Half-Hitches Alternating Posts (RHAPs) Effects on Arthroscopic Knot Integrity.

Kansas journal of medicine

Chong AC, Prohaska DJ, Bye BP.
PMID: 29472965
Kans J Med. 2017 May 15;10(2):35-39. eCollection 2017 May.

INTRODUCTION: With arthroscopic techniques being used, the importance of knot tying has been examined. Previous literature has examined the use of reversing half-hitches on alternating posts (RHAPs) on knot security. Separately, there has been research regarding different suture materials...

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Chong AC, Prohaska DJ, Bye BP. Validation of Different Combination of Three Reversing Half-Hitches Alternating Posts (RHAPs) Effects on Arthroscopic Knot Integrity. Kans J Med. 2017;10(2):35-39
Chong, A. C., Prohaska, D. J., & Bye, B. P. (2017). Validation of Different Combination of Three Reversing Half-Hitches Alternating Posts (RHAPs) Effects on Arthroscopic Knot Integrity. Kansas journal of medicine, 10(2), 35-39.
Chong, Alexander Cm, et al. "Validation of Different Combination of Three Reversing Half-Hitches Alternating Posts (RHAPs) Effects on Arthroscopic Knot Integrity." Kansas journal of medicine vol. 10,2 (2017): 35-39.
Chong AC, Prohaska DJ, Bye BP. Validation of Different Combination of Three Reversing Half-Hitches Alternating Posts (RHAPs) Effects on Arthroscopic Knot Integrity. Kans J Med. 2017 May 15;10(2):35-39. eCollection 2017 May. PMID: 29472965; PMCID: PMC5733413.
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