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Structure and function of the Salmonella typhimurium and Escherichia coli K-12 histidine operons

k-12

Alifano P.
GSID: qeB5qarP3_IJ
MS Carlomagno, L Chiariotti, P Alifano… - Journal of molecular …, 1988 - Elsevier

We have determined the complete nucleotide sequence of the histidine operons of Escherichia coli and of Salmonella typhimurium. This structural information enabled us to investigate the expression and organization of the histidine operon. The proteins coded by each of...

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Carlomagno, M. S., Chiariotti, L., Alifano, P., Nappo, A. G., & Bruni, C. B. (1988). Structure and function of the Salmonella typhimurium and Escherichia coli K-12 histidine operons. Journal of molecular biology, 203(3), 585-606.
Carlomagno, Maria Stella, et al. "Structure and function of the Salmonella typhimurium and Escherichia coli K-12 histidine operons." Journal of molecular biology 203.3 (1988): 585-606.
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Sleep Duration Buffers The Effects of Adversity on Mental Health Among Recently Immigrated Latinx Adolescents

Latinx/Hispanic ethnicity

Venta A, Alfano C.
GSID: XVYz3WBL-w4J
A Venta, C Alfano - Journal of Child & Adolescent Trauma, 2021 - Springer

… Although multiple studies find Latinx/Hispanic youth in the US to exhibit shorter sleep … Indeed, “Latinx” in the current study refers to self-identification as part of this ethnic group or a …

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Venta, A., & Alfano, C. (2021). Sleep Duration Buffers The Effects of Adversity on Mental Health Among Recently Immigrated Latinx Adolescents. Journal of Child & Adolescent Trauma, 1-13.
Venta, Amanda, and Candice Alfano. "Sleep Duration Buffers The Effects of Adversity on Mental Health Among Recently Immigrated Latinx Adolescents." Journal of Child & Adolescent Trauma (2021): 1-13.
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Can Sleep Facilitate Adaptation for Immigrant High Schoolers? Longitudinal Relations Between Sleep Duration, Acculturative Stress, and Acculturation

Latinx/Hispanic ethnicity

Venta A, Alfano C.
GSID: qx1q-xZqfesJ
A Venta, C Alfano - Child Psychiatry & Human Development, 2021 - Springer

… Latinx/Hispanic youth in the US receive less sleep than their non-Hispanic White peers [27, 28], though less is known about sleep among recently-immigrated Latinx/Hispanic … ethnic …

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Venta, A., & Alfano, C. (2021). Can Sleep Facilitate Adaptation for Immigrant High Schoolers? Longitudinal Relations Between Sleep Duration, Acculturative Stress, and Acculturation. Child Psychiatry & Human Development, 1-7.
Venta, Amanda, and Candice Alfano. "Can Sleep Facilitate Adaptation for Immigrant High Schoolers? Longitudinal Relations Between Sleep Duration, Acculturative Stress, and Acculturation." Child Psychiatry & Human Development (2021): 1-7.
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PATZ1 is a new prognostic marker of glioblastoma associated with the stem-like phenotype and enriched in the proneural subtype.

Oncotarget

Guadagno E, Vitiello M, Francesca P, Calì G, Caponnetto F, Cesselli D, Camorani S, Borrelli G, Califano M, Cappabianca P, Arra C, Crescenzi E, Cerchia L, De Caro MLDB, Fedele M.
PMID: 28938636
Oncotarget. 2017 Jul 25;8(35):59282-59300. doi: 10.18632/oncotarget.19546. eCollection 2017 Aug 29.

Glioblastoma (GBM), the most malignant of the brain tumors, has been classified on the basis of molecular signature into four subtypes: classical, mesenchymal, proneural and neural, among which the mesenchymal and proneural subtypes have the shortest and longest survival,...

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Guadagno E, Vitiello M, Francesca P, et al. PATZ1 is a new prognostic marker of glioblastoma associated with the stem-like phenotype and enriched in the proneural subtype. Oncotarget. 2017;8(35):59282-59300doi: 10.18632/oncotarget.19546.
Guadagno, E., Vitiello, M., Francesca, P., Calì, G., Caponnetto, F., Cesselli, D., Camorani, S., Borrelli, G., Califano, M., Cappabianca, P., Arra, C., Crescenzi, E., Cerchia, L., De Caro, M. L. D. B., & Fedele, M. (2017). PATZ1 is a new prognostic marker of glioblastoma associated with the stem-like phenotype and enriched in the proneural subtype. Oncotarget, 8(35), 59282-59300. https://doi.org/10.18632/oncotarget.19546
Guadagno, Elia, et al. "PATZ1 is a new prognostic marker of glioblastoma associated with the stem-like phenotype and enriched in the proneural subtype." Oncotarget vol. 8,35 (2017): 59282-59300. doi: https://doi.org/10.18632/oncotarget.19546
Guadagno E, Vitiello M, Francesca P, Calì G, Caponnetto F, Cesselli D, Camorani S, Borrelli G, Califano M, Cappabianca P, Arra C, Crescenzi E, Cerchia L, De Caro MLDB, Fedele M. PATZ1 is a new prognostic marker of glioblastoma associated with the stem-like phenotype and enriched in the proneural subtype. Oncotarget. 2017 Jul 25;8(35):59282-59300. doi: 10.18632/oncotarget.19546. eCollection 2017 Aug 29. PMID: 28938636; PMCID: PMC5601732.
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High expression of podoplanin in squamous cell carcinoma of the tongue occurs predominantly in patients ≤40 years but does not correlate with tumour spread.

The journal of pathology. Clinical research

Sgaramella N, Lindell Jonsson E, Boldrup L, Califano L, Coates PJ, Tartaro G, Lo Muzio L, Fåhraeus R, Colella G, Dell'Aversana Orabona G, Loljung L, Santagata M, Rossiello R, Wilms T, Danielsson K, Laurell G, Nylander K.
PMID: 27499910
J Pathol Clin Res. 2015 Oct 09;2(1):3-8. doi: 10.1002/cjp2.28. eCollection 2016 Jan.

More than 30% of patients with squamous cell carcinoma (SCC) of the mobile tongue have clinically undetectable lymph node metastasis. Tumour cells can spread as single cells or collectively. A protein known to play a role in both processes...

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Sgaramella N, Lindell Jonsson E, Boldrup L, et al. High expression of podoplanin in squamous cell carcinoma of the tongue occurs predominantly in patients ≤40 years but does not correlate with tumour spread. J Pathol Clin Res. 2015;2(1):3-8doi: 10.1002/cjp2.28.
Sgaramella, N., Lindell Jonsson, E., Boldrup, L., Califano, L., Coates, P. J., Tartaro, G., Lo Muzio, L., Fåhraeus, R., Colella, G., Dell'Aversana Orabona, G., Loljung, L., Santagata, M., Rossiello, R., Wilms, T., Danielsson, K., Laurell, G., & Nylander, K. (2016). High expression of podoplanin in squamous cell carcinoma of the tongue occurs predominantly in patients ≤40 years but does not correlate with tumour spread. The journal of pathology. Clinical research, 2(1), 3-8. https://doi.org/10.1002/cjp2.28
Sgaramella, Nicola, et al. "High expression of podoplanin in squamous cell carcinoma of the tongue occurs predominantly in patients ≤40 years but does not correlate with tumour spread." The journal of pathology. Clinical research vol. 2,1 (2016): 3-8. doi: https://doi.org/10.1002/cjp2.28
Sgaramella N, Lindell Jonsson E, Boldrup L, Califano L, Coates PJ, Tartaro G, Lo Muzio L, Fåhraeus R, Colella G, Dell'Aversana Orabona G, Loljung L, Santagata M, Rossiello R, Wilms T, Danielsson K, Laurell G, Nylander K. High expression of podoplanin in squamous cell carcinoma of the tongue occurs predominantly in patients ≤40 years but does not correlate with tumour spread. J Pathol Clin Res. 2015 Oct 09;2(1):3-8. doi: 10.1002/cjp2.28. eCollection 2016 Jan. PMID: 27499910; PMCID: PMC4858125.
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Biosensor Applications of MAPLE Deposited Lipase.

Biosensors

Califano V, Bloisi F, Aronne A, Federici S, Nasti L, Depero LE, Vicari LR.
PMID: 25587426
Biosensors (Basel). 2014 Oct 03;4(4):329-39. doi: 10.3390/bios4040329. eCollection 2014 Dec.

Matrix Assisted Pulsed Laser Evaporation (MAPLE) is a thin film deposition technique derived from Pulsed Laser Deposition (PLD) for deposition of delicate (polymers, complex biological molecules, etc.) materials in undamaged form. The main difference of MAPLE technique with respect...

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Califano V, Bloisi F, Aronne A, et al. Biosensor Applications of MAPLE Deposited Lipase. Biosensors (Basel). 2014;4(4):329-39doi: 10.3390/bios4040329.
Califano, V., Bloisi, F., Aronne, A., Federici, S., Nasti, L., Depero, L. E., & Vicari, L. R. (2014). Biosensor Applications of MAPLE Deposited Lipase. Biosensors, 4(4), 329-39. https://doi.org/10.3390/bios4040329
Califano, Valeria, et al. "Biosensor Applications of MAPLE Deposited Lipase." Biosensors vol. 4,4 (2014): 329-39. doi: https://doi.org/10.3390/bios4040329
Califano V, Bloisi F, Aronne A, Federici S, Nasti L, Depero LE, Vicari LR. Biosensor Applications of MAPLE Deposited Lipase. Biosensors (Basel). 2014 Oct 03;4(4):329-39. doi: 10.3390/bios4040329. eCollection 2014 Dec. PMID: 25587426; PMCID: PMC4287705.
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RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2013 special issue.

Journal of computational biology : a journal of computational molecular cell biology

Califano A, Kellis M, Stolovitzky G.
PMID: 24784777
J Comput Biol. 2014 May;21(5):371-2. doi: 10.1089/cmb.2014.009p.

No abstract available.

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Califano A, Kellis M, Stolovitzky G. RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2013 special issue. J Comput Biol. 2014;21(5):371-2doi: 10.1089/cmb.2014.009p.
Califano, A., Kellis, M., & Stolovitzky, G. (2014). RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2013 special issue. Journal of computational biology : a journal of computational molecular cell biology, 21(5), 371-2. https://doi.org/10.1089/cmb.2014.009p
Califano, Andrea, et al. "RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2013 special issue." Journal of computational biology : a journal of computational molecular cell biology vol. 21,5 (2014): 371-2. doi: https://doi.org/10.1089/cmb.2014.009p
Califano A, Kellis M, Stolovitzky G. RECOMB/ISCB systems biology, regulatory genomics, and DREAM 2013 special issue. J Comput Biol. 2014 May;21(5):371-2. doi: 10.1089/cmb.2014.009p. PMID: 24784777.
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Asymptotic evolution of nonlinear landau damping.

Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics

Brunetti M, Califano F, Pegoraro F.
PMID: 11088937
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Sep;62(3):4109-14. doi: 10.1103/physreve.62.4109.

The long-time evolution of nonlinear Landau damping in collisionless plasmas is analyzed by solving the Vlasov-Poisson system numerically. The value of the parameter marking the transition between Landau's and O'Neil's regimes is determined and compared with analytical results. The...

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Brunetti M, Califano F, Pegoraro F. Asymptotic evolution of nonlinear landau damping. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000;62(3):4109-14doi: 10.1103/physreve.62.4109.
Brunetti, M., Califano, F., & Pegoraro, F. (2000). Asymptotic evolution of nonlinear landau damping. Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics, 62(3), 4109-14. https://doi.org/10.1103/physreve.62.4109
Brunetti, et al. "Asymptotic evolution of nonlinear landau damping." Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics vol. 62,3 (2000): 4109-14. doi: https://doi.org/10.1103/physreve.62.4109
Brunetti M, Califano F, Pegoraro F. Asymptotic evolution of nonlinear landau damping. Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Sep;62(3):4109-14. doi: 10.1103/physreve.62.4109. PMID: 11088937.
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iTools: a framework for classification, categorization and integration of computational biology resources.

PloS one

Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW.
PMID: 18509477
PLoS One. 2008 May 28;3(5):e2265. doi: 10.1371/journal.pone.0002265.

The advancement of the computational biology field hinges on progress in three fundamental directions--the development of new computational algorithms, the availability of informatics resource management infrastructures and the capability of tools to interoperate and synergize. There is an explosion...

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Dinov ID, Rubin D, Lorensen W, et al. iTools: a framework for classification, categorization and integration of computational biology resources. PLoS One. 2008;3(5):e2265doi: 10.1371/journal.pone.0002265.
Dinov, I. D., Rubin, D., Lorensen, W., Dugan, J., Ma, J., Murphy, S., Kirschner, B., Bug, W., Sherman, M., Floratos, A., Kennedy, D., Jagadish, H. V., Schmidt, J., Athey, B., Califano, A., Musen, M., Altman, R., Kikinis, R., Kohane, I., Delp, S., Parker, D. S., & Toga, A. W. (2008). iTools: a framework for classification, categorization and integration of computational biology resources. PloS one, 3(5), e2265. https://doi.org/10.1371/journal.pone.0002265
Dinov, Ivo D, et al. "iTools: a framework for classification, categorization and integration of computational biology resources." PloS one vol. 3,5 (2008): e2265. doi: https://doi.org/10.1371/journal.pone.0002265
Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW. iTools: a framework for classification, categorization and integration of computational biology resources. PLoS One. 2008 May 28;3(5):e2265. doi: 10.1371/journal.pone.0002265. PMID: 18509477; PMCID: PMC2386255.
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Pattern-based mining strategy to detect multi-locus association and gene x environment interaction.

BMC proceedings

Li Z, Zheng T, Califano A, Floratos A.
PMID: 18466505
BMC Proc. 2007;1:S16. doi: 10.1186/1753-6561-1-s1-s16. Epub 2007 Dec 18.

As genome-wide association studies grow in popularity for the identification of genetic factors for common and rare diseases, analytical methods to comb through large numbers of genetic variants efficiently to identify disease association are increasingly in demand. We have...

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Li Z, Zheng T, Califano A, et al. Pattern-based mining strategy to detect multi-locus association and gene x environment interaction. BMC Proc. 2007;1:S16doi: 10.1186/1753-6561-1-s1-s16.
Li, Z., Zheng, T., Califano, A., & Floratos, A. (2007). Pattern-based mining strategy to detect multi-locus association and gene x environment interaction. BMC proceedings, 1S16. https://doi.org/10.1186/1753-6561-1-s1-s16
Li, Zhong, et al. "Pattern-based mining strategy to detect multi-locus association and gene x environment interaction." BMC proceedings vol. 1 (2007): S16. doi: https://doi.org/10.1186/1753-6561-1-s1-s16
Li Z, Zheng T, Califano A, Floratos A. Pattern-based mining strategy to detect multi-locus association and gene x environment interaction. BMC Proc. 2007;1:S16. doi: 10.1186/1753-6561-1-s1-s16. Epub 2007 Dec 18. PMID: 18466505; PMCID: PMC2367515.
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Substrate Stiffness and Cell Area Predict Cellular Traction Stresses in Single Cells and Cells in Contact.

Cellular and molecular bioengineering

Califano JP, Reinhart-King CA.
PMID: 21116436
Cell Mol Bioeng. 2010 Mar 01;3(1):68-75. doi: 10.1007/s12195-010-0102-6.

Cells generate traction stresses against their substrate during adhesion and migration, and traction stresses are used in part by the cell to sense the substrate. While it is clear that traction stresses, substrate stiffness, and cell area are related,...

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Califano JP, Reinhart-King CA. Substrate Stiffness and Cell Area Predict Cellular Traction Stresses in Single Cells and Cells in Contact. Cell Mol Bioeng. 2010;3(1):68-75doi: 10.1007/s12195-010-0102-6.
Califano, J. P., & Reinhart-King, C. A. (2010). Substrate Stiffness and Cell Area Predict Cellular Traction Stresses in Single Cells and Cells in Contact. Cellular and molecular bioengineering, 3(1), 68-75. https://doi.org/10.1007/s12195-010-0102-6
Califano, Joseph P, and Reinhart-King, Cynthia A. "Substrate Stiffness and Cell Area Predict Cellular Traction Stresses in Single Cells and Cells in Contact." Cellular and molecular bioengineering vol. 3,1 (2010): 68-75. doi: https://doi.org/10.1007/s12195-010-0102-6
Califano JP, Reinhart-King CA. Substrate Stiffness and Cell Area Predict Cellular Traction Stresses in Single Cells and Cells in Contact. Cell Mol Bioeng. 2010 Mar 01;3(1):68-75. doi: 10.1007/s12195-010-0102-6. PMID: 21116436; PMCID: PMC2992361.
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Two-dimensional kinetic turbulence in the solar wind.

Physical review letters

Valentini F, Califano F, Veltri P.
PMID: 20867033
Phys Rev Lett. 2010 May 21;104(20):205002. doi: 10.1103/PhysRevLett.104.205002. Epub 2010 May 17.

We present the first 2D hybrid-Vlasov simulations of turbulence in the solar wind that describe the evolution of the energy spectra in a range of two decades of wavelengths around the ion inertial scale. Several previous magnetohydrodynamics and particle-in-cell...

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Valentini F, Califano F, Veltri P. Two-dimensional kinetic turbulence in the solar wind. Phys Rev Lett. 2010;104(20):205002doi: 10.1103/PhysRevLett.104.205002.
Valentini, F., Califano, F., & Veltri, P. (2010). Two-dimensional kinetic turbulence in the solar wind. Physical review letters, 104(20), 205002. https://doi.org/10.1103/PhysRevLett.104.205002
Valentini, F, et al. "Two-dimensional kinetic turbulence in the solar wind." Physical review letters vol. 104,20 (2010): 205002. doi: https://doi.org/10.1103/PhysRevLett.104.205002
Valentini F, Califano F, Veltri P. Two-dimensional kinetic turbulence in the solar wind. Phys Rev Lett. 2010 May 21;104(20):205002. doi: 10.1103/PhysRevLett.104.205002. Epub 2010 May 17. PMID: 20867033.
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Showing 1 to 12 of 374 entries