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Genome Sequence of Salmonella Phage 9NA.

Genome announcements

Casjens SR, Leavitt JC, Hatfull GF, Hendrix RW.
PMID: 25146133
Genome Announc. 2014 Aug 21;2(4). doi: 10.1128/genomeA.00531-14.

The virulent double-stranded DNA (dsDNA) bacteriophage 9NA infects Salmonella enterica serovar Typhimurium and has a long noncontractile tail. We report its complete 52,869-bp genome sequence. Phage 9NA and two closely related S. enterica serovar Newport phages represent a tailed...

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Casjens SR, Leavitt JC, Hatfull GF, et al. Genome Sequence of Salmonella Phage 9NA. Genome Announc. 2014;2(4)doi: 10.1128/genomeA.00531-14.
Casjens, S. R., Leavitt, J. C., Hatfull, G. F., & Hendrix, R. W. (2014). Genome Sequence of Salmonella Phage 9NA. Genome announcements, 2(4), . https://doi.org/10.1128/genomeA.00531-14
Casjens, Sherwood R, et al. "Genome Sequence of Salmonella Phage 9NA." Genome announcements vol. 2,4 (2014). doi: https://doi.org/10.1128/genomeA.00531-14
Casjens SR, Leavitt JC, Hatfull GF, Hendrix RW. Genome Sequence of Salmonella Phage 9NA. Genome Announc. 2014 Aug 21;2(4). doi: 10.1128/genomeA.00531-14. PMID: 25146133; PMCID: PMC4153490.
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Genome Sequence of Salmonella Phage χ.

Genome announcements

Hendrix RW, Ko CC, Jacobs-Sera D, Hatfull GF, Erhardt M, Hughes KT, Casjens SR.
PMID: 25720684
Genome Announc. 2015 Feb 26;3(1). doi: 10.1128/genomeA.01229-14.

Salmonella bacteriophage χ is a member of the Siphoviridae family that gains entry into its host cells by adsorbing to their flagella. We report the complete 59,578-bp sequence of the genome of phage χ, which together with its relatives,...

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Hendrix RW, Ko CC, Jacobs-Sera D, et al. Genome Sequence of Salmonella Phage χ. Genome Announc. 2015;3(1)doi: 10.1128/genomeA.01229-14.
Hendrix, R. W., Ko, C. C., Jacobs-Sera, D., Hatfull, G. F., Erhardt, M., Hughes, K. T., & Casjens, S. R. (2015). Genome Sequence of Salmonella Phage χ. Genome announcements, 3(1), . https://doi.org/10.1128/genomeA.01229-14
Hendrix, Roger W, et al. "Genome Sequence of Salmonella Phage χ." Genome announcements vol. 3,1 (2015). doi: https://doi.org/10.1128/genomeA.01229-14
Hendrix RW, Ko CC, Jacobs-Sera D, Hatfull GF, Erhardt M, Hughes KT, Casjens SR. Genome Sequence of Salmonella Phage χ. Genome Announc. 2015 Feb 26;3(1). doi: 10.1128/genomeA.01229-14. PMID: 25720684; PMCID: PMC4342425.
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Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.

Frontiers in microbiology

Motlagh AM, Bhattacharjee AS, Coutinho FH, Dutilh BE, Casjens SR, Goel RK.
PMID: 28316597
Front Microbiol. 2017 Mar 03;8:352. doi: 10.3389/fmicb.2017.00352. eCollection 2017.

Bacteriophages, as the most abundant biological entities on Earth, place significant predation pressure on their hosts. This pressure plays a critical role in the evolution, diversity, and abundance of bacteria. In addition, phages modulate the genetic diversity of prokaryotic...

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Motlagh AM, Bhattacharjee AS, Coutinho FH, et al. Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses. Front Microbiol. 2017;8:352doi: 10.3389/fmicb.2017.00352.
Motlagh, A. M., Bhattacharjee, A. S., Coutinho, F. H., Dutilh, B. E., Casjens, S. R., & Goel, R. K. (2017). Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses. Frontiers in microbiology, 8352. https://doi.org/10.3389/fmicb.2017.00352
Motlagh, Amir Mohaghegh, et al. "Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses." Frontiers in microbiology vol. 8 (2017): 352. doi: https://doi.org/10.3389/fmicb.2017.00352
Motlagh AM, Bhattacharjee AS, Coutinho FH, Dutilh BE, Casjens SR, Goel RK. Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses. Front Microbiol. 2017 Mar 03;8:352. doi: 10.3389/fmicb.2017.00352. eCollection 2017. PMID: 28316597; PMCID: PMC5334351.
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Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures.

PloS one

Ahrens M, Turewicz M, Casjens S, May C, Pesch B, Stephan C, Woitalla D, Gold R, Brüning T, Meyer HE, Rahnenführer J, Eisenacher M.
PMID: 24278130
PLoS One. 2013 Nov 22;8(11):e79380. doi: 10.1371/journal.pone.0079380. eCollection 2013.

Detection of yet unknown subgroups showing differential gene or protein expression is a frequent goal in the analysis of modern molecular data. Applications range from cancer biology over developmental biology to toxicology. Often a control and an experimental group...

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Ahrens M, Turewicz M, Casjens S, et al. Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures. PLoS One. 2013;8(11):e79380doi: 10.1371/journal.pone.0079380.
Ahrens, M., Turewicz, M., Casjens, S., May, C., Pesch, B., Stephan, C., Woitalla, D., Gold, R., Brüning, T., Meyer, H. E., Rahnenführer, J., & Eisenacher, M. (2013). Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures. PloS one, 8(11), e79380. https://doi.org/10.1371/journal.pone.0079380
Ahrens, Maike, et al. "Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures." PloS one vol. 8,11 (2013): e79380. doi: https://doi.org/10.1371/journal.pone.0079380
Ahrens M, Turewicz M, Casjens S, May C, Pesch B, Stephan C, Woitalla D, Gold R, Brüning T, Meyer HE, Rahnenführer J, Eisenacher M. Detection of patient subgroups with differential expression in omics data: a comprehensive comparison of univariate measures. PLoS One. 2013 Nov 22;8(11):e79380. doi: 10.1371/journal.pone.0079380. eCollection 2013. PMID: 24278130; PMCID: PMC3838370.
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Social jetlag and sleep debts are altered in different rosters of night shift work.

PloS one

Casjens S, Brenscheidt F, Tisch A, Beermann B, Brüning T, Behrens T, Rabstein S.
PMID: 34995309
PLoS One. 2022 Jan 07;17(1):e0262049. doi: 10.1371/journal.pone.0262049. eCollection 2022.

BACKGROUND: Night and shift work are suspected to cause various adverse effects on health and sleep. Sleep deprivation through shift work is assumed to be compensated on free days. So far it is not clear how different shift systems...

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Casjens S, Brenscheidt F, Tisch A, et al. Social jetlag and sleep debts are altered in different rosters of night shift work. PLoS One. 2022;17(1):e0262049doi: 10.1371/journal.pone.0262049.
Casjens, S., Brenscheidt, F., Tisch, A., Beermann, B., Brüning, T., Behrens, T., & Rabstein, S. (2022). Social jetlag and sleep debts are altered in different rosters of night shift work. PloS one, 17(1), e0262049. https://doi.org/10.1371/journal.pone.0262049
Casjens, Swaantje, et al. "Social jetlag and sleep debts are altered in different rosters of night shift work." PloS one vol. 17,1 (2022): e0262049. doi: https://doi.org/10.1371/journal.pone.0262049
Casjens S, Brenscheidt F, Tisch A, Beermann B, Brüning T, Behrens T, Rabstein S. Social jetlag and sleep debts are altered in different rosters of night shift work. PLoS One. 2022 Jan 07;17(1):e0262049. doi: 10.1371/journal.pone.0262049. eCollection 2022. PMID: 34995309; PMCID: PMC8740972.
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Circulating long non-coding RNA .

Biomarker research

Weber DG, Casjens S, Brik A, Raiko I, Lehnert M, Taeger D, Gleichenhagen J, Kollmeier J, Bauer TT, Brüning T, Johnen G.
PMID: 32435497
Biomark Res. 2020 May 13;8:15. doi: 10.1186/s40364-020-00194-4. eCollection 2020.

No abstract available.

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Weber DG, Casjens S, Brik A, et al. Circulating long non-coding RNA . Biomark Res. 2020;8:15doi: 10.1186/s40364-020-00194-4.
Weber, D. G., Casjens, S., Brik, A., Raiko, I., Lehnert, M., Taeger, D., Gleichenhagen, J., Kollmeier, J., Bauer, T. T., Brüning, T., Johnen, G. (2020). Circulating long non-coding RNA . Biomarker research, 815. https://doi.org/10.1186/s40364-020-00194-4
Weber, Daniel G, et al. "Circulating long non-coding RNA ." Biomarker research vol. 8 (2020): 15. doi: https://doi.org/10.1186/s40364-020-00194-4
Weber DG, Casjens S, Brik A, Raiko I, Lehnert M, Taeger D, Gleichenhagen J, Kollmeier J, Bauer TT, Brüning T, Johnen G. Circulating long non-coding RNA . Biomark Res. 2020 May 13;8:15. doi: 10.1186/s40364-020-00194-4. eCollection 2020. PMID: 32435497; PMCID: PMC7222324.
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Blood-based detection of lung cancer using cysteine-rich angiogenic inducer 61 (CYR61) as a circulating protein biomarker: a pilot study.

Molecular oncology

Ac Kar L, Casjens S, Andreas A, Raiko I, Brüning T, Geffken M, Peine S, Kollmeier J, Johnen G, Bartkowiak K, Weber DG, Pantel K.
PMID: 34510714
Mol Oncol. 2021 Nov;15(11):2877-2890. doi: 10.1002/1878-0261.13099. Epub 2021 Oct 03.

Lung cancer is the most often diagnosed cancer and the main cause of cancer deaths in the world compared with other tumor entities. To date, the only screening method for high-risk lung cancer patients is low-dosed computed tomography which...

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Ac Kar L, Casjens S, Andreas A, et al. Blood-based detection of lung cancer using cysteine-rich angiogenic inducer 61 (CYR61) as a circulating protein biomarker: a pilot study. Mol Oncol. 2021;15(11):2877-2890doi: 10.1002/1878-0261.13099.
Ac Kar, L., Casjens, S., Andreas, A., Raiko, I., Brüning, T., Geffken, M., Peine, S., Kollmeier, J., Johnen, G., Bartkowiak, K., Weber, D. G., & Pantel, K. (2021). Blood-based detection of lung cancer using cysteine-rich angiogenic inducer 61 (CYR61) as a circulating protein biomarker: a pilot study. Molecular oncology, 15(11), 2877-2890. https://doi.org/10.1002/1878-0261.13099
Ac Kar, Lucija, et al. "Blood-based detection of lung cancer using cysteine-rich angiogenic inducer 61 (CYR61) as a circulating protein biomarker: a pilot study." Molecular oncology vol. 15,11 (2021): 2877-2890. doi: https://doi.org/10.1002/1878-0261.13099
Ac Kar L, Casjens S, Andreas A, Raiko I, Brüning T, Geffken M, Peine S, Kollmeier J, Johnen G, Bartkowiak K, Weber DG, Pantel K. Blood-based detection of lung cancer using cysteine-rich angiogenic inducer 61 (CYR61) as a circulating protein biomarker: a pilot study. Mol Oncol. 2021 Nov;15(11):2877-2890. doi: 10.1002/1878-0261.13099. Epub 2021 Oct 03. PMID: 34510714; PMCID: PMC8564649.
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Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins.

Viruses

Leavitt JC, Gilcrease EB, Woodbury BM, Teschke CM, Casjens SR.
PMID: 34452369
Viruses. 2021 Jul 30;13(8). doi: 10.3390/v13081504.

Tailed double-stranded DNA bacteriophages inject some proteins with their dsDNA during infection. Phage P22 injects about 12, 12, and 30 molecules of the proteins encoded by genes

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Leavitt JC, Gilcrease EB, Woodbury BM, et al. Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses. 2021;13(8)doi: 10.3390/v13081504.
Leavitt, J. C., Gilcrease, E. B., Woodbury, B. M., Teschke, C. M., & Casjens, S. R. (2021). Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses, 13(8), . https://doi.org/10.3390/v13081504
Leavitt, Justin C, et al. "Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins." Viruses vol. 13,8 (2021). doi: https://doi.org/10.3390/v13081504
Leavitt JC, Gilcrease EB, Woodbury BM, Teschke CM, Casjens SR. Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses. 2021 Jul 30;13(8). doi: 10.3390/v13081504. PMID: 34452369; PMCID: PMC8402733.
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Genome Sequences of 12 Phages That Infect Klebsiella pneumoniae.

Microbiology resource announcements

Thurgood TL, Sharma R, Call JJ, Chronis JD, Dawson DD, Finnegan ZK, Foster KW, Meek T, Potts E, Sirrine MR, Atkinson AD, Fairholm JD, Handoko YA, Ong KL, Tateoka OB, Arens DK, Johnson L, Kruger JL, Loertscher E, Thompson DW, Walker JK, Robison RA, Casjens SR, Grose JH.
PMID: 32299868
Microbiol Resour Announc. 2020 Apr 16;9(16). doi: 10.1128/MRA.00024-20.

No abstract available.

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Thurgood TL, Sharma R, Call JJ, et al. Genome Sequences of 12 Phages That Infect Klebsiella pneumoniae. Microbiol Resour Announc. 2020;9(16)doi: 10.1128/MRA.00024-20.
Thurgood, T. L., Sharma, R., Call, J. J., Chronis, J. D., Dawson, D. D., Finnegan, Z. K., Foster, K. W., Meek, T., Potts, E., Sirrine, M. R., Atkinson, A. D., Fairholm, J. D., Handoko, Y. A., Ong, K. L., Tateoka, O. B., Arens, D. K., Johnson, L., Kruger, J. L., Loertscher, E., Thompson, D. W., Walker, J. K., Robison, R. A., Casjens, S. R., & Grose, J. H. (2020). Genome Sequences of 12 Phages That Infect Klebsiella pneumoniae. Microbiology resource announcements, 9(16), . https://doi.org/10.1128/MRA.00024-20
Thurgood, Trever L, et al. "Genome Sequences of 12 Phages That Infect Klebsiella pneumoniae." Microbiology resource announcements vol. 9,16 (2020). doi: https://doi.org/10.1128/MRA.00024-20
Thurgood TL, Sharma R, Call JJ, Chronis JD, Dawson DD, Finnegan ZK, Foster KW, Meek T, Potts E, Sirrine MR, Atkinson AD, Fairholm JD, Handoko YA, Ong KL, Tateoka OB, Arens DK, Johnson L, Kruger JL, Loertscher E, Thompson DW, Walker JK, Robison RA, Casjens SR, Grose JH. Genome Sequences of 12 Phages That Infect Klebsiella pneumoniae. Microbiol Resour Announc. 2020 Apr 16;9(16). doi: 10.1128/MRA.00024-20. PMID: 32299868; PMCID: PMC7163006.
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The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella.

Frontiers in microbiology

Bearson BL, Allen HK, Brunelle BW, Lee IS, Casjens SR, Stanton TB.
PMID: 24575089
Front Microbiol. 2014 Feb 11;5:52. doi: 10.3389/fmicb.2014.00052. eCollection 2014.

Antibiotics are used for disease therapeutic or preventative effects in humans and animals, as well as for enhanced feed conversion efficiency in livestock. Antibiotics can also cause undesirable effects in microbial populations, including selection for antibiotic resistance, enhanced pathogen...

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Bearson BL, Allen HK, Brunelle BW, et al. The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella. Front Microbiol. 2014;5:52doi: 10.3389/fmicb.2014.00052.
Bearson, B. L., Allen, H. K., Brunelle, B. W., Lee, I. S., Casjens, S. R., & Stanton, T. B. (2014). The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella. Frontiers in microbiology, 552. https://doi.org/10.3389/fmicb.2014.00052
Bearson, Bradley L, et al. "The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella." Frontiers in microbiology vol. 5 (2014): 52. doi: https://doi.org/10.3389/fmicb.2014.00052
Bearson BL, Allen HK, Brunelle BW, Lee IS, Casjens SR, Stanton TB. The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella. Front Microbiol. 2014 Feb 11;5:52. doi: 10.3389/fmicb.2014.00052. eCollection 2014. PMID: 24575089; PMCID: PMC3920066.
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Genome Sequence of .

Genome announcements

Leavitt JC, Heitkamp AJ, Bhattacharjee AS, Gilcrease EB, Casjens SR.
PMID: 28360173
Genome Announc. 2017 Mar 30;5(13). doi: 10.1128/genomeA.01494-16.

No abstract available.

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Leavitt JC, Heitkamp AJ, Bhattacharjee AS, et al. Genome Sequence of . Genome Announc. 2017;5(13)doi: 10.1128/genomeA.01494-16.
Leavitt, J. C., Heitkamp, A. J., Bhattacharjee, A. S., Gilcrease, E. B., & Casjens, S. R. (2017). Genome Sequence of . Genome announcements, 5(13), . https://doi.org/10.1128/genomeA.01494-16
Leavitt, Justin C, et al. "Genome Sequence of ." Genome announcements vol. 5,13 (2017). doi: https://doi.org/10.1128/genomeA.01494-16
Leavitt JC, Heitkamp AJ, Bhattacharjee AS, Gilcrease EB, Casjens SR. Genome Sequence of . Genome Announc. 2017 Mar 30;5(13). doi: 10.1128/genomeA.01494-16. PMID: 28360173; PMCID: PMC5374247.
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Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins.

Viruses

Leavitt JC, Gilcrease EB, Woodbury BM, Teschke CM, Casjens SR.
PMID: 34452369
Viruses. 2021 Jul 30;13(8). doi: 10.3390/v13081504.

Tailed double-stranded DNA bacteriophages inject some proteins with their dsDNA during infection. Phage P22 injects about 12, 12, and 30 molecules of the proteins encoded by genes

Cite
Leavitt JC, Gilcrease EB, Woodbury BM, et al. Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses. 2021;13(8)doi: 10.3390/v13081504.
Leavitt, J. C., Gilcrease, E. B., Woodbury, B. M., Teschke, C. M., & Casjens, S. R. (2021). Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses, 13(8), . https://doi.org/10.3390/v13081504
Leavitt, Justin C, et al. "Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins." Viruses vol. 13,8 (2021). doi: https://doi.org/10.3390/v13081504
Leavitt JC, Gilcrease EB, Woodbury BM, Teschke CM, Casjens SR. Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses. 2021 Jul 30;13(8). doi: 10.3390/v13081504. PMID: 34452369; PMCID: PMC8402733.
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Showing 1 to 12 of 22 entries