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Recent developments in imaging system assessment methodology, FROC analysis and the search model.

Nuclear instruments & methods in physics research. Section A, Accelerators, spectrometers, detectors and associated equipment

Chakraborty DP.
PMID: 21804679
Nucl Instrum Methods Phys Res A. 2011 Aug 21;648:S297-S301. doi: 10.1016/j.nima.2010.11.042.

A frequent problem in imaging is assessing whether a new imaging system is an improvement over an existing standard. Observer performance methods, in particular the receiver operating characteristic (ROC) paradigm, are widely used in this context. In ROC analysis...

Semianalytical approach to study the loss characteristics of a symmetrical multilayered plasmonic waveguide.

Applied optics

Roy B, Chakraborty R.
PMID: 26974641
Appl Opt. 2016 Mar 01;55(7):1765-71. doi: 10.1364/AO.55.001765.

A metal waveguide of finite width and thickness surrounded by a dielectric provides increased propagation length of the surface plasmon polariton and is therefore called long-range surface plasmon polaritons (LR-SPP). In this work, a new structure is proposed by...

Search for gravitational waves associated with γ-ray bursts detected by the interplanetary network.

Physical review letters

Aasi J, Abbott BP, Abbott R, Abbott T, Abernathy MR, Acernese F, Ackley K, Adams C, Adams T, Addesso P, Adhikari RX, Affeldt C, Agathos M, Aggarwal N, Aguiar OD, Ajith P, Alemic A, Allen B, Allocca A, Amariutei D, Andersen M, Anderson RA, Anderson SB, Anderson WG, Arai K, Araya MC, Arceneaux C, Areeda JS, Ast S, Aston SM, Astone P, Aufmuth P, Augustus H, Aulbert C, Aylott BE, Babak S, Baker PT, Ballardin G, Ballmer SW, Barayoga JC, Barbet M, Barish BC, Barker D, Barone F, Barr B, Barsotti L, Barsuglia M, Barton MA, Bartos I, Bassiri R, Basti A, Batch JC, Bauchrowitz J, Bauer TS, Baune C, Bavigadda V, Behnke B, Bejger M, Beker MG, Belczynski C, Bell AS, Bell C, Bergmann G, Bersanetti D, Bertolini A, Betzwieser J, Bilenko IA, Billingsley G, Birch J, Biscans S, Bitossi M, Biwer C, Bizouard MA, Black E, Blackburn JK, Blackburn L, Blair D, Bloemen S, Bock O, Bodiya TP, Boer M, Bogaert G, Bogan C, Bond C, Bondu F, Bonelli L, Bonnand R, Bork R, Born M, Boschi V, Bose S, Bosi L, Bradaschia C, Brady PR, Braginsky VB, Branchesi M, Brau JE, Briant T, Bridges DO, Brillet A, Brinkmann M, Brisson V, Brooks AF, Brown DA, Brown DD, Brückner F, Buchman S, Buikema A, Bulik T, Bulten HJ, Buonanno A, Burman R, Buskulic D, Buy C, Cadonati L, Cagnoli G, Calderón Bustillo J, Calloni E, Camp JB, Campsie P, Cannon KC, Canuel B, Cao J, Capano CD, Carbognani F, Carbone L, Caride S, Castaldi G, Caudill S, Cavaglià M, Cavalier F, Cavalieri R, Celerier C, Cella G, Cepeda C, Cesarini E, Chakraborty R, Chalermsongsak T, Chamberlin SJ, Chao S, Charlton P, Chassande-Mottin E, Chen X, Chen Y, Chincarini A, Chiummo A, Cho HS, Cho M, Chow JH, Christensen N, Chu Q, Chua SS, Chung S, Ciani G, Clara F, Clark DE, Clark JA, Clayton JH, Cleva F, Coccia E, Cohadon PF, Colla A, Collette C, Colombini M, Cominsky L, Constancio M, Conte A, Cook D, Corbitt TR, Cornish N, Corsi A, Costa CA, Coughlin MW, Coulon JP, Countryman S, Couvares P, Coward DM, Cowart MJ, Coyne DC, Coyne R, Craig K, Creighton JD, Croce RP, Crowder SG, Cumming A, Cunningham L, Cuoco E, Cutler C, Dahl K, Dal Canton T, Damjanic M, Danilishin SL, D'Antonio S, Danzmann K, Dattilo V, Daveloza H, Davier M, Davies GS, Daw EJ, Day R, Dayanga T, DeBra D, Debreczeni G, Degallaix J, Deléglise S, Del Pozzo W, Denker T, Dent T, Dereli H, Dergachev V, De Rosa R, DeRosa RT, DeSalvo R, Dhurandhar S, Díaz M, Dickson J, Di Fiore L, Di Lieto A, Di Palma I, Di Virgilio A, Dolique V, Dominguez E, Donovan F, Dooley KL, Doravari S, Douglas R, Downes TP, Drago M, Drever RW, Driggers JC, Du Z, Ducrot M, Dwyer S, Eberle T, Edo T, Edwards M, Effler A, Eggenstein HB, Ehrens P, Eichholz J, Eikenberry SS, Endrőczi G, Essick R, Etzel T, Evans M, Evans T, Factourovich M, Fafone V, Fairhurst S, Fan X, Fang Q, Farinon S, Farr B, Farr WM, Favata M, Fazi D, Fehrmann H, Fejer MM, Feldbaum D, Feroz F, Ferrante I, Ferreira EC, Ferrini F, Fidecaro F, Finn LS, Fiori I, Fisher RP, Flaminio R, Fournier JD, Franco S, Frasca S, Frasconi F, Frede M, Frei Z, Freise A, Frey R, Fricke TT, Fritschel P, Frolov VV, Fulda P, Fyffe M, Gair JR, Gammaitoni L, Gaonkar S, Garufi F, Gehrels N, Gemme G, Gendre B, Genin E, Gennai A, Ghosh S, Giaime JA, Giardina KD, Giazotto A, Gleason J, Goetz E, Goetz R, Gondan L, González G, Gordon N, Gorodetsky ML, Gossan S, Goßler S, Gouaty R, Gräf C, Graff PB, Granata M, Grant A, Gras S, Gray C, Greenhalgh RJ, Gretarsson AM, Groot P, Grote H, Grover K, Grunewald S, Guidi GM, Guido CJ, Gushwa K, Gustafson EK, Gustafson R, Ha J, Hall ED, Hamilton W, Hammer D, Hammond G, Hanke M, Hanks J, Hanna C, Hannam MD, Hanson J, Harms J, Harry GM, Harry IW, Harstad ED, Hart M, Hartman MT, Haster CJ, Haughian K, Heidmann A, Heintze M, Heitmann H, Hello P, Hemming G, Hendry M, Heng IS, Heptonstall AW, Heurs M, Hewitson M, Hild S, Hoak D, Hodge KA, Hofman D, Holt K, Hopkins P, Horrom T, Hoske D, Hosken DJ, Hough J, Howell EJ, Hu Y, Huerta E, Hughey B, Husa S, Huttner SH, Huynh M, Huynh-Dinh T, Idrisy A, Ingram DR, Inta R, Islas G, Isogai T, Ivanov A, Iyer BR, Izumi K, Jacobson M, Jang H, Jaranowski P, Ji Y, Jiménez-Forteza F, Johnson WW, Jones DI, Jones R, Jonker RJ, Ju L, Haris K, Kalmus P, Kalogera V, Kandhasamy S, Kang G, Kanner JB, Karlen J, Kasprzack M, Katsavounidis E, Katzman W, Kaufer H, Kaufer S, Kaur T, Kawabe K, Kawazoe F, Kéfélian F, Keiser GM, Keitel D, Kelley DB, Kells W, Keppel DG, Khalaidovski A, Khalili FY, Khazanov EA, Kim C, Kim K, Kim NG, Kim N, Kim S, Kim YM, King EJ, King PJ, Kinzel DL, Kissel JS, Klimenko S, Kline J, Koehlenbeck S, Kokeyama K, Kondrashov V, Koranda S, Korth WZ, Kowalska I, Kozak DB, Kringel V, Krishnan B, Królak A, Kuehn G, Kumar A, Kumar DN, Kumar P, Kumar R, Kuo L, Kutynia A, Lam PK, Landry M, Lantz B, Larson S, Lasky PD, Lazzarini A, Lazzaro C, Leaci P, Leavey S, Lebigot EO, Lee CH, Lee HK, Lee HM, Lee J, Lee PJ, Leonardi M, Leong JR, Leonor I, Le Roux A, Leroy N, Letendre N, Levin Y, Levine B, Lewis J, Li TG, Libbrecht K, Libson A, Lin AC, Littenberg TB, Lockerbie NA, Lockett V, Lodhia D, Loew K, Logue J, Lombardi AL, Lopez E, Lorenzini M, Loriette V, Lormand M, Losurdo G, Lough J, Lubinski MJ, Lück H, Lundgren AP, Ma Y, Macdonald EP, MacDonald T, Machenschalk B, MacInnis M, Macleod DM, Magaña-Sandoval F, Magee R, Mageswaran M, Maglione C, Mailand K, Majorana E, Maksimovic I, Malvezzi V, Man N, Manca GM, Mandel I, Mandic V, Mangano V, Mangini NM, Mansell G, Mantovani M, Marchesoni F, Marion F, Márka S, Márka Z, Markosyan A, Maros E, Marque J, Martelli F, Martin IW, Martin RM, Martinelli L, Martynov D, Marx JN, Mason K, Masserot A, Massinger TJ, Matichard F, Matone L, Mavalvala N, May G, Mazumder N, Mazzolo G, McCarthy R, McClelland DE, McGuire SC, McIntyre G, McIver J, McLin K, Meacher D, Meadors GD, Mehmet M, Meidam J, Meinders M, Melatos A, Mendell G, Mercer RA, Meshkov S, Messenger C, Meyer MS, Meyers PM, Mezzani F, Miao H, Michel C, Mikhailov EE, Milano L, Miller J, Minenkov Y, Mingarelli CM, Mishra C, Mitra S, Mitrofanov VP, Mitselmakher G, Mittleman R, Moe B, Moggi A, Mohan M, Mohapatra SR, Moraru D, Moreno G, Morgado N, Morriss SR, Mossavi K, Mours B, Mow-Lowry CM, Mueller CL, Mueller G, Mukherjee S, Mullavey A, Munch J, Murphy D, Murray PG, Mytidis A, Nagy MF, Nardecchia I, Naticchioni L, Nayak RK, Necula V, Nelemans G, Neri I, Neri M, Newton G, Nguyen T, Nielsen AB, Nissanke S, Nitz AH, Nocera F, Nolting D, Normandin ME, Nuttall LK, Ochsner E, O'Dell J, Oelker E, Oh JJ, Oh SH, Ohme F, Omar S, Oppermann P, Oram R, O'Reilly B, Ortega W, O'Shaughnessy R, Osthelder C, Ottaway DJ, Ottens RS, Overmier H, Owen BJ, Padilla C, Pai A, Palashov O, Palomba C, Pan H, Pan Y, Pankow C, Paoletti F, Papa MA, Paris H, Pasqualetti A, Passaquieti R, Passuello D, Pedraza M, Pele A, Penn S, Perreca A, Phelps M, Pichot M, Pickenpack M, Piergiovanni F, Pierro V, Pinard L, Pinto IM, Pitkin M, Poeld J, Poggiani R, Poteomkin A, Powell J, Prasad J, Predoi V, Premachandra S, Prestegard T, Price LR, Prijatelj M, Privitera S, Prodi GA, Prokhorov L, Puncken O, Punturo M, Puppo P, Pürrer M, Qin J, Quetschke V, Quintero E, Quitzow-James R, Raab FJ, Rabeling DS, Rácz I, Radkins H, Raffai P, Raja S, Rajalakshmi G, Rakhmanov M, Ramet C, Ramirez K, Rapagnani P, Raymond V, Razzano M, Re V, Recchia S, Reed CM, Regimbau T, Reid S, Reitze DH, Reula O, Rhoades E, Ricci F, Riesen R, Riles K, Robertson NA, Robinet F, Rocchi A, Roddy SB, Rolland L, Rollins JG, Romano R, Romanov G, Romie JH, Rosińska D, Rowan S, Rüdiger A, Ruggi P, Ryan K, Salemi F, Sammut L, Sandberg V, Sanders JR, Sankar S, Sannibale V, Santiago-Prieto I, Saracco E, Sassolas B, Sathyaprakash BS, Saulson PR, Savage R, Scheuer J, Schilling R, Schilman M, Schmidt P, Schnabel R, Schofield RM, Schreiber E, Schuette D, Schutz BF, Scott J, Scott SM, Sellers D, Sengupta AS, Sentenac D, Sequino V, Sergeev A, Shaddock DA, Shah S, Shahriar MS, Shaltev M, Shao Z, Shapiro B, Shawhan P, Shoemaker DH, Sidery TL, Siellez K, Siemens X, Sigg D, Simakov D, Singer A, Singer L, Singh R, Sintes AM, Slagmolen BJ, Slutsky J, Smith JR, Smith MR, Smith RJ, Smith-Lefebvre ND, Son EJ, Sorazu B, Souradeep T, Staley A, Stebbins J, Steinke M, Steinlechner J, Steinlechner S, Stephens BC, Steplewski S, Stevenson S, Stone R, Stops D, Strain KA, Straniero N, Strigin S, Sturani R, Stuver AL, Summerscales TZ, Susmithan S, Sutton PJ, Swinkels B, Tacca M, Talukder D, Tanner DB, Tao J, Tarabrin SP, Taylor R, Tellez G, Thirugnanasambandam MP, Thomas M, Thomas P, Thorne KA, Thorne KS, Thrane E, Tiwari V, Tokmakov KV, Tomlinson C, Tonelli M, Torres CV, Torrie CI, Travasso F, Traylor G, Tse M, Tshilumba D, Tuennermann H, Ugolini D, Unnikrishnan CS, Urban AL, Usman SA, Vahlbruch H, Vajente G, Valdes G, Vallisneri M, van Beuzekom M, van den Brand JF, Van Den Broeck C, van der Sluys MV, van Heijningen J, van Veggel AA, Vass S, Vasúth M, Vaulin R, Vecchio A, Vedovato G, Veitch J, Veitch PJ, Venkateswara K, Verkindt D, Vetrano F, Viceré A, Vincent-Finley R, Vinet JY, Vitale S, Vo T, Vocca H, Vorvick C, Vousden WD, Vyachanin SP, Wade AR, Wade L, Wade M, Walker M, Wallace L, Walsh S, Wang M, Wang X, Ward RL, Was M, Weaver B, Wei LW, Weinert M, Weinstein AJ, Weiss R, Welborn T, Wen L, Wessels P, West M, Westphal T, Wette K, Whelan JT, White DJ, Whiting BF, Wiesner K, Wilkinson C, Williams K, Williams L, Williams R, Williams TD, Williamson AR, Willis JL, Willke B, Wimmer M, Winkler W, Wipf CC, Wiseman AG, Wittel H, Woan G, Wolovick N, Worden J, Wu Y, Yablon J, Yakushin I, Yam W, Yamamoto H, Yancey CC, Yang H, Yoshida S, Yvert M, Zadrożny A, Zanolin M, Zendri JP, Zhang F, Zhang L, Zhao C, Zhu H, Zhu XJ, Zucker ME, Zuraw S, Zweizig J, Aptekar RL, Atteia JL, Cline T, Connaughton V, Frederiks DD, Golenetskii SV, Hurley K, Krimm HA, Marisaldi M, Pal'shin VD, Palmer D, Svinkin DS, Terada Y, von Kienlin A.
PMID: 25032916
Phys Rev Lett. 2014 Jul 04;113(1):011102. doi: 10.1103/PhysRevLett.113.011102. Epub 2014 Jun 30.

We present the results of a search for gravitational waves associated with 223 γ-ray bursts (GRBs) detected by the InterPlanetary Network (IPN) in 2005-2010 during LIGO's fifth and sixth science runs and Virgo's first, second, and third science runs....

An overview of physico-chemical mechanisms of biogas production by microbial communities: a step towards sustainable waste management.

3 Biotech

Goswami R, Chattopadhyay P, Shome A, Banerjee SN, Chakraborty AK, Mathew AK, Chaudhury S.
PMID: 28330142
3 Biotech. 2016 Jun;6(1):72. doi: 10.1007/s13205-016-0395-9. Epub 2016 Feb 16.

Biogas is a combination of methane, CO

Complete genome sequence of classical Swine Fever virus subgenogroup 2.1 from assam, India.

Genome announcements

Ahuja A, Bhattacharjee U, Chakraborty AK, Karam A, Ghatak S, Puro K, Das S, Shakuntala I, Srivastava N, Ngachan SV, Sen A.
PMID: 25614559
Genome Announc. 2015 Jan 22;3(1). doi: 10.1128/genomeA.01437-14.

We report the complete genome sequence of a classical swine fever virus (genogroup 2.1), isolated from an outbreak in Assam, India. This particular isolate showed a high degree of genetic variation within the subgenogroup 2.1 and may serve as...

Abiotic elicitors mediated elicitation of innate immunity in tomato: an ex vivo comparison.

Physiology and molecular biology of plants : an international journal of functional plant biology

Chakraborty N, Ghosh S, Chandra S, Sengupta S, Acharya K.
PMID: 27729717
Physiol Mol Biol Plants. 2016 Jul;22(3):307-320. doi: 10.1007/s12298-016-0373-z. Epub 2016 Aug 18.

Improvement of the host resistance by using hazard free chemical elicitors is emerging as an alternative approach in the field of plant disease management. In our present work, we have screened the efficacy and possible mechanism of abiogenic elicitors...

Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during .

Cell death discovery

Nag P, Aggarwal PR, Ghosh S, Narula K, Tayal R, Maheshwari N, Chakraborty N, Chakraborty S.
PMID: 29152379
Cell Death Discov. 2017 Nov 13;3:17073. doi: 10.1038/cddiscovery.2017.73. eCollection 2017.

Although precisely controlled innate immune response is governed by conserved cellular events in phylogenetically diverse hosts, the underlying molecular mechanisms by which this process is regulated against a multi-host pathogen remain unknown.

Further enhancement of light extraction efficiency from light emitting diode using triangular surface grating and thin interface layer.

Applied optics

Ghosh R, Haldar A, Ghosh KK, Chakraborty R.
PMID: 25967806
Appl Opt. 2015 Feb 01;54(4):919-26. doi: 10.1364/AO.54.000919.

Analysis has been done of improvement of forward directional light extraction efficiency of light emitting diodes (LEDs) by surface patterning of different types of one-dimensional profiles on indium-zinc-oxide films developed recently by our group using sol-gel technique. Finite-difference time-domain...

Characterizing elemental, equivalent black, and refractory black carbon aerosol particles: a review of techniques, their limitations and uncertainties.

Analytical and bioanalytical chemistry

Lack DA, Moosmüller H, McMeeking GR, Chakrabarty RK, Baumgardner D.
PMID: 24297322
Anal Bioanal Chem. 2014 Jan;406(1):99-122. doi: 10.1007/s00216-013-7402-3. Epub 2013 Dec 03.

Elemental-, equivalent black- and refractory black-carbon are terms that have been defined in order to dissect the more general term, black carbon, into its component parts related to its specific chemical and optical properties and its impact on climate...

A simple mechanistic way to increase the survival of Mammalian cells during processing for dry storage.

Biopreservation and biobanking

Chakraborty N, Biswas D, Elliott GD.
PMID: 24845939
Biopreserv Biobank. 2010 Jun;8(2):107-14. doi: 10.1089/bio.2010.0010.

Recently, there has been considerable interest in developing processing methods that enable storage of cells in a dry state. Most of these studies describe cell viability following processing as a function of the final moisture content reached or the...

Application of critical path analysis in clinical trials.

Journal of advanced pharmaceutical technology & research

Kumar A, Chakraborty BS.
PMID: 26955606
J Adv Pharm Technol Res. 2016 Jan-Mar;7(1):17-21. doi: 10.4103/2231-4040.173263.

Clinical research operates in a strictly regulated environment under various management models, but a distinct management model of clinical trial (CT) still needs exploration and research. Critical path analysis (CPA) is a management approach can be used for monitoring,...

Multilocus DNA profiling using the probe 33.6 in the Tamil Nadu population of South India.

American journal of human biology : the official journal of the Human Biology Council

Pandian SK, Kumar S, Dharmalingam K, Damodaran C, Chakraborty R.
PMID: 28561318
Am J Hum Biol. 1998;10(1):87-93. doi: 10.1002/(SICI)1520-6300(1998)10:1<87::AID-AJHB10>3.0.CO;2-F.

Using the multilocus minisatellite probe 33.6 in combination with the HinfI restriction enzyme, the extent of genetic variation detected by DNA fingerprinting was estimated in 102 unrelated individuals of the Dravidian Hindu population of Tamil Nadu, South India. In...

Showing 1 to 12 of 599 entries