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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.

Frontiers in plant science

Contreras-Moreira B, Cantalapiedra CP, García-Pereira MJ, Gordon SP, Vogel JP, Igartua E, Casas AM, Vinuesa P.
PMID: 28261241
Front Plant Sci. 2017 Feb 14;8:184. doi: 10.3389/fpls.2017.00184. eCollection 2017.

The pan-genome of a species is defined as the union of all the genes and non-coding sequences found in all its individuals. However, constructing a pan-genome for plants with large genomes is daunting both in sequencing cost and the...

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Contreras-Moreira B, Cantalapiedra CP, García-Pereira MJ, et al. Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. Front Plant Sci. 2017;8:184doi: 10.3389/fpls.2017.00184.
Contreras-Moreira, B., Cantalapiedra, C. P., García-Pereira, M. J., Gordon, S. P., Vogel, J. P., Igartua, E., Casas, A. M., & Vinuesa, P. (2017). Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. Frontiers in plant science, 8184. https://doi.org/10.3389/fpls.2017.00184
Contreras-Moreira, Bruno, et al. "Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species." Frontiers in plant science vol. 8 (2017): 184. doi: https://doi.org/10.3389/fpls.2017.00184
Contreras-Moreira B, Cantalapiedra CP, García-Pereira MJ, Gordon SP, Vogel JP, Igartua E, Casas AM, Vinuesa P. Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. Front Plant Sci. 2017 Feb 14;8:184. doi: 10.3389/fpls.2017.00184. eCollection 2017. PMID: 28261241; PMCID: PMC5306281.
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GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus .

Frontiers in microbiology

Vinuesa P, Ochoa-Sánchez LE, Contreras-Moreira B.
PMID: 29765358
Front Microbiol. 2018 May 01;9:771. doi: 10.3389/fmicb.2018.00771. eCollection 2018.

The massive accumulation of genome-sequences in public databases promoted the proliferation of genome-level phylogenetic analyses in many areas of biological research. However, due to diverse evolutionary and genetic processes, many loci have undesirable properties for phylogenetic reconstruction. These, if...

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Vinuesa P, Ochoa-Sánchez LE, Contreras-Moreira B. GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus . Front Microbiol. 2018;9:771doi: 10.3389/fmicb.2018.00771.
Vinuesa, P., Ochoa-Sánchez, L. E., & Contreras-Moreira, B. (2018). GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus . Frontiers in microbiology, 9771. https://doi.org/10.3389/fmicb.2018.00771
Vinuesa, Pablo, et al. "GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus ." Frontiers in microbiology vol. 9 (2018): 771. doi: https://doi.org/10.3389/fmicb.2018.00771
Vinuesa P, Ochoa-Sánchez LE, Contreras-Moreira B. GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus . Front Microbiol. 2018 May 01;9:771. doi: 10.3389/fmicb.2018.00771. eCollection 2018. PMID: 29765358; PMCID: PMC5938378.
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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.

Nucleic acids research

De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, Ruffier M, Sakthivel MP, Sheppard D, Tate J, Thormann A, Thybert D, Trevanion SJ, Winterbottom A, Zerbino DR, Finn RD, Flicek P, Yates AD.
PMID: 34634797
Nucleic Acids Res. 2021 Oct 11; doi: 10.1093/nar/gkab889. Epub 2021 Oct 11.

The COVID-19 pandemic has seen unprecedented use of SARS-CoV-2 genome sequencing for epidemiological tracking and identification of emerging variants. Understanding the potential impact of these variants on the infectivity of the virus and the efficacy of emerging therapeutics and...

Cite
De Silva NH, Bhai J, Chakiachvili M, et al. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 2021;doi: 10.1093/nar/gkab889.
De Silva, N. H., Bhai, J., Chakiachvili, M., Contreras-Moreira, B., Cummins, C., Frankish, A., Gall, A., Genez, T., Howe, K. L., Hunt, S. E., Martin, F. J., Moore, B., Ogeh, D., Parker, A., Parton, A., Ruffier, M., Sakthivel, M. P., Sheppard, D., Tate, J., Thormann, A., Thybert, D., Trevanion, S. J., Winterbottom, A., Zerbino, D. R., Finn, R. D., Flicek, P., & Yates, A. D. (2021). The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic acids research, . https://doi.org/10.1093/nar/gkab889
De Silva, Nishadi H, et al. "The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data." Nucleic acids research vol. (2021). doi: https://doi.org/10.1093/nar/gkab889
De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, Ruffier M, Sakthivel MP, Sheppard D, Tate J, Thormann A, Thybert D, Trevanion SJ, Winterbottom A, Zerbino DR, Finn RD, Flicek P, Yates AD. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 2021 Oct 11; doi: 10.1093/nar/gkab889. Epub 2021 Oct 11. PMID: 34634797; PMCID: PMC8524594.
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Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace.

Frontiers in plant science

Cantalapiedra CP, García-Pereira MJ, Gracia MP, Igartua E, Casas AM, Contreras-Moreira B.
PMID: 28507554
Front Plant Sci. 2017 May 01;8:647. doi: 10.3389/fpls.2017.00647. eCollection 2017.

Drought causes important losses in crop production every season. Improvement for drought tolerance could take advantage of the diversity held in germplasm collections, much of which has not been incorporated yet into modern breeding. Spanish landraces constitute a promising...

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Cantalapiedra CP, García-Pereira MJ, Gracia MP, et al. Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace. Front Plant Sci. 2017;8:647doi: 10.3389/fpls.2017.00647.
Cantalapiedra, C. P., García-Pereira, M. J., Gracia, M. P., Igartua, E., Casas, A. M., & Contreras-Moreira, B. (2017). Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace. Frontiers in plant science, 8647. https://doi.org/10.3389/fpls.2017.00647
Cantalapiedra, Carlos P, et al. "Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace." Frontiers in plant science vol. 8 (2017): 647. doi: https://doi.org/10.3389/fpls.2017.00647
Cantalapiedra CP, García-Pereira MJ, Gracia MP, Igartua E, Casas AM, Contreras-Moreira B. Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace. Front Plant Sci. 2017 May 01;8:647. doi: 10.3389/fpls.2017.00647. eCollection 2017. PMID: 28507554; PMCID: PMC5410667.
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HvFT1 polymorphism and effect-survey of barley germplasm and expression analysis.

Frontiers in plant science

Loscos J, Igartua E, Contreras-Moreira B, Gracia MP, Casas AM.
PMID: 24936204
Front Plant Sci. 2014 Jun 06;5:251. doi: 10.3389/fpls.2014.00251. eCollection 2014.

Flowering time in plants is a tightly regulated process. In barley (Hordeum vulgare L.), HvFT1, ortholog of FLOWERING LOCUS T, is the main integrator of the photoperiod and vernalization signals leading to the transition from vegetative to reproductive state...

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Loscos J, Igartua E, Contreras-Moreira B, et al. HvFT1 polymorphism and effect-survey of barley germplasm and expression analysis. Front Plant Sci. 2014;5:251doi: 10.3389/fpls.2014.00251.
Loscos, J., Igartua, E., Contreras-Moreira, B., Gracia, M. P., & Casas, A. M. (2014). HvFT1 polymorphism and effect-survey of barley germplasm and expression analysis. Frontiers in plant science, 5251. https://doi.org/10.3389/fpls.2014.00251
Loscos, Jorge, et al. "HvFT1 polymorphism and effect-survey of barley germplasm and expression analysis." Frontiers in plant science vol. 5 (2014): 251. doi: https://doi.org/10.3389/fpls.2014.00251
Loscos J, Igartua E, Contreras-Moreira B, Gracia MP, Casas AM. HvFT1 polymorphism and effect-survey of barley germplasm and expression analysis. Front Plant Sci. 2014 Jun 06;5:251. doi: 10.3389/fpls.2014.00251. eCollection 2014. PMID: 24936204; PMCID: PMC4047512.
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Protein profile of Beta vulgaris leaf apoplastic fluid and changes induced by Fe deficiency and Fe resupply.

Frontiers in plant science

Ceballos-Laita L, Gutierrez-Carbonell E, Lattanzio G, Vázquez S, Contreras-Moreira B, Abadía A, Abadía J, López-Millán AF.
PMID: 25852707
Front Plant Sci. 2015 Mar 18;6:145. doi: 10.3389/fpls.2015.00145. eCollection 2015.

The fluid collected by direct leaf centrifugation has been used to study the proteome of the sugar beet apoplastic fluid as well as the changes induced by Fe deficiency and Fe resupply to Fe-deficient plants in the protein profile....

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Ceballos-Laita L, Gutierrez-Carbonell E, Lattanzio G, et al. Protein profile of Beta vulgaris leaf apoplastic fluid and changes induced by Fe deficiency and Fe resupply. Front Plant Sci. 2015;6:145doi: 10.3389/fpls.2015.00145.
Ceballos-Laita, L., Gutierrez-Carbonell, E., Lattanzio, G., Vázquez, S., Contreras-Moreira, B., Abadía, A., Abadía, J., & López-Millán, A. F. (2015). Protein profile of Beta vulgaris leaf apoplastic fluid and changes induced by Fe deficiency and Fe resupply. Frontiers in plant science, 6145. https://doi.org/10.3389/fpls.2015.00145
Ceballos-Laita, Laura, et al. "Protein profile of Beta vulgaris leaf apoplastic fluid and changes induced by Fe deficiency and Fe resupply." Frontiers in plant science vol. 6 (2015): 145. doi: https://doi.org/10.3389/fpls.2015.00145
Ceballos-Laita L, Gutierrez-Carbonell E, Lattanzio G, Vázquez S, Contreras-Moreira B, Abadía A, Abadía J, López-Millán AF. Protein profile of Beta vulgaris leaf apoplastic fluid and changes induced by Fe deficiency and Fe resupply. Front Plant Sci. 2015 Mar 18;6:145. doi: 10.3389/fpls.2015.00145. eCollection 2015. PMID: 25852707; PMCID: PMC4364163.
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Tracking the Ancestry of Known and 'Ghost' Homeologous Subgenomes in Model Grass Brachypodium Polyploids.

The Plant journal : for cell and molecular biology

Sancho R, Inda LA, Díaz-Pérez A, Des Marais DL, Gordon S, Vogel JP, Lusinska J, Hasterok R, Contreras-Moreira B, Catalán P.
PMID: 34951515
Plant J. 2021 Dec 24; doi: 10.1111/tpj.15650. Epub 2021 Dec 24.

Unraveling the evolution of plant polyploids is a challenge when their diploid progenitor species are extinct or unknown or when genome sequences of known progenitors are unavailable. Existing subgenome identification methods cannot adequately infer the homeologous genomes that are...

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Sancho R, Inda LA, Díaz-Pérez A, et al. Tracking the Ancestry of Known and 'Ghost' Homeologous Subgenomes in Model Grass Brachypodium Polyploids. Plant J. 2021;doi: 10.1111/tpj.15650.
Sancho, R., Inda, L. A., Díaz-Pérez, A., Des Marais, D. L., Gordon, S., Vogel, J. P., Lusinska, J., Hasterok, R., Contreras-Moreira, B., & Catalán, P. (2021). Tracking the Ancestry of Known and 'Ghost' Homeologous Subgenomes in Model Grass Brachypodium Polyploids. The Plant journal : for cell and molecular biology, . https://doi.org/10.1111/tpj.15650
Sancho, Rubén, et al. "Tracking the Ancestry of Known and 'Ghost' Homeologous Subgenomes in Model Grass Brachypodium Polyploids." The Plant journal : for cell and molecular biology vol. (2021). doi: https://doi.org/10.1111/tpj.15650
Sancho R, Inda LA, Díaz-Pérez A, Des Marais DL, Gordon S, Vogel JP, Lusinska J, Hasterok R, Contreras-Moreira B, Catalán P. Tracking the Ancestry of Known and 'Ghost' Homeologous Subgenomes in Model Grass Brachypodium Polyploids. Plant J. 2021 Dec 24; doi: 10.1111/tpj.15650. Epub 2021 Dec 24. PMID: 34951515.
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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.

Nucleic acids research

De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, Ruffier M, Sakthivel MP, Sheppard D, Tate J, Thormann A, Thybert D, Trevanion SJ, Winterbottom A, Zerbino DR, Finn RD, Flicek P, Yates AD.
PMID: 34634797
Nucleic Acids Res. 2022 Jan 07;50:D765-D770. doi: 10.1093/nar/gkab889.

The COVID-19 pandemic has seen unprecedented use of SARS-CoV-2 genome sequencing for epidemiological tracking and identification of emerging variants. Understanding the potential impact of these variants on the infectivity of the virus and the efficacy of emerging therapeutics and...

Cite
De Silva NH, Bhai J, Chakiachvili M, et al. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 2022;50:D765-D770doi: 10.1093/nar/gkab889.
De Silva, N. H., Bhai, J., Chakiachvili, M., Contreras-Moreira, B., Cummins, C., Frankish, A., Gall, A., Genez, T., Howe, K. L., Hunt, S. E., Martin, F. J., Moore, B., Ogeh, D., Parker, A., Parton, A., Ruffier, M., Sakthivel, M. P., Sheppard, D., Tate, J., Thormann, A., Thybert, D., Trevanion, S. J., Winterbottom, A., Zerbino, D. R., Finn, R. D., Flicek, P., & Yates, A. D. (2022). The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic acids research, 50D765-D770. https://doi.org/10.1093/nar/gkab889
De Silva, Nishadi H, et al. "The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data." Nucleic acids research vol. 50 (2022): D765-D770. doi: https://doi.org/10.1093/nar/gkab889
De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, Ruffier M, Sakthivel MP, Sheppard D, Tate J, Thormann A, Thybert D, Trevanion SJ, Winterbottom A, Zerbino DR, Finn RD, Flicek P, Yates AD. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 2022 Jan 07;50:D765-D770. doi: 10.1093/nar/gkab889. PMID: 34634797; PMCID: PMC8524594.
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Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model .

Plants (Basel, Switzerland)

Decena MA, Gálvez-Rojas S, Agostini F, Sancho R, Contreras-Moreira B, Des Marais DL, Hernandez P, Catalán P.
PMID: 34961135
Plants (Basel). 2021 Dec 03;10(12). doi: 10.3390/plants10122664.

Dehydration proteins (dehydrins, DHNs) confer tolerance to water-stress deficit in plants. We performed a comparative genomics and evolutionary study of DHN genes in four model

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Decena MA, Gálvez-Rojas S, Agostini F, et al. Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model . Plants (Basel). 2021;10(12)doi: 10.3390/plants10122664.
Decena, M. A., Gálvez-Rojas, S., Agostini, F., Sancho, R., Contreras-Moreira, B., Des Marais, D. L., Hernandez, P., & Catalán, P. (2021). Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model . Plants (Basel, Switzerland), 10(12), . https://doi.org/10.3390/plants10122664
Decena, Maria Angeles, et al. "Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model ." Plants (Basel, Switzerland) vol. 10,12 (2021). doi: https://doi.org/10.3390/plants10122664
Decena MA, Gálvez-Rojas S, Agostini F, Sancho R, Contreras-Moreira B, Des Marais DL, Hernandez P, Catalán P. Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model . Plants (Basel). 2021 Dec 03;10(12). doi: 10.3390/plants10122664. PMID: 34961135.
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Transcriptional Responses in Root and Leaf of .

Frontiers in plant science

Ksouri N, Jiménez S, Wells CE, Contreras-Moreira B, Gogorcena Y.
PMID: 27933070
Front Plant Sci. 2016 Nov 23;7:1715. doi: 10.3389/fpls.2016.01715. eCollection 2016.

No abstract available.

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Ksouri N, Jiménez S, Wells CE, et al. Transcriptional Responses in Root and Leaf of . Front Plant Sci. 2016;7:1715doi: 10.3389/fpls.2016.01715.
Ksouri, N., Jiménez, S., Wells, C. E., Contreras-Moreira, B., & Gogorcena, Y. (2016). Transcriptional Responses in Root and Leaf of . Frontiers in plant science, 71715. https://doi.org/10.3389/fpls.2016.01715
Ksouri, Najla, et al. "Transcriptional Responses in Root and Leaf of ." Frontiers in plant science vol. 7 (2016): 1715. doi: https://doi.org/10.3389/fpls.2016.01715
Ksouri N, Jiménez S, Wells CE, Contreras-Moreira B, Gogorcena Y. Transcriptional Responses in Root and Leaf of . Front Plant Sci. 2016 Nov 23;7:1715. doi: 10.3389/fpls.2016.01715. eCollection 2016. PMID: 27933070; PMCID: PMC5120087.
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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.

Nucleic acids research

De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, Ruffier M, Sakthivel MP, Sheppard D, Tate J, Thormann A, Thybert D, Trevanion SJ, Winterbottom A, Zerbino DR, Finn RD, Flicek P, Yates AD.
PMID: 34634797
Nucleic Acids Res. 2022 Jan 07;50:D765-D770. doi: 10.1093/nar/gkab889.

The COVID-19 pandemic has seen unprecedented use of SARS-CoV-2 genome sequencing for epidemiological tracking and identification of emerging variants. Understanding the potential impact of these variants on the infectivity of the virus and the efficacy of emerging therapeutics and...

Cite
De Silva NH, Bhai J, Chakiachvili M, et al. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 2022;50:D765-D770doi: 10.1093/nar/gkab889.
De Silva, N. H., Bhai, J., Chakiachvili, M., Contreras-Moreira, B., Cummins, C., Frankish, A., Gall, A., Genez, T., Howe, K. L., Hunt, S. E., Martin, F. J., Moore, B., Ogeh, D., Parker, A., Parton, A., Ruffier, M., Sakthivel, M. P., Sheppard, D., Tate, J., Thormann, A., Thybert, D., Trevanion, S. J., Winterbottom, A., Zerbino, D. R., Finn, R. D., Flicek, P., & Yates, A. D. (2022). The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic acids research, 50D765-D770. https://doi.org/10.1093/nar/gkab889
De Silva, Nishadi H, et al. "The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data." Nucleic acids research vol. 50 (2022): D765-D770. doi: https://doi.org/10.1093/nar/gkab889
De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, Ruffier M, Sakthivel MP, Sheppard D, Tate J, Thormann A, Thybert D, Trevanion SJ, Winterbottom A, Zerbino DR, Finn RD, Flicek P, Yates AD. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 2022 Jan 07;50:D765-D770. doi: 10.1093/nar/gkab889. PMID: 34634797; PMCID: PMC8524594.
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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.

Nucleic acids research

Yates AD, Allen J, Amode RM, Azov AG, Barba M, Becerra A, Bhai J, Campbell LI, Carbajo Martinez M, Chakiachvili M, Chougule K, Christensen M, Contreras-Moreira B, Cuzick A, Da Rin Fioretto L, Davis P, De Silva NH, Diamantakis S, Dyer S, Elser J, Filippi CV, Gall A, Grigoriadis D, Guijarro-Clarke C, Gupta P, Hammond-Kosack KE, Howe KL, Jaiswal P, Kaikala V, Kumar V, Kumari S, Langridge N, Le T, Luypaert M, Maslen GL, Maurel T, Moore B, Muffato M, Mushtaq A, Naamati G, Naithani S, Olson A, Parker A, Paulini M, Pedro H, Perry E, Preece J, Quinton-Tulloch M, Rodgers F, Rosello M, Ruffier M, Seager J, Sitnik V, Szpak M, Tate J, Tello-Ruiz MK, Trevanion SJ, Urban M, Ware D, Wei S, Williams G, Winterbottom A, Zarowiecki M, Finn RD, Flicek P.
PMID: 34791415
Nucleic Acids Res. 2022 Jan 07;50:D996-D1003. doi: 10.1093/nar/gkab1007.

Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed by the Ensembl project (https://www.ensembl.org). The two resources collectively present genome annotation through a consistent set of interfaces spanning the tree of life presenting genome...

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Yates AD, Allen J, Amode RM, et al. Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res. 2022;50:D996-D1003doi: 10.1093/nar/gkab1007.
Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., Bhai, J., Campbell, L. I., Carbajo Martinez, M., Chakiachvili, M., Chougule, K., Christensen, M., Contreras-Moreira, B., Cuzick, A., Da Rin Fioretto, L., Davis, P., De Silva, N. H., Diamantakis, S., Dyer, S., Elser, J., Filippi, C. V., Gall, A., Grigoriadis, D., Guijarro-Clarke, C., Gupta, P., Hammond-Kosack, K. E., Howe, K. L., Jaiswal, P., Kaikala, V., Kumar, V., Kumari, S., Langridge, N., Le, T., Luypaert, M., Maslen, G. L., Maurel, T., Moore, B., Muffato, M., Mushtaq, A., Naamati, G., Naithani, S., Olson, A., Parker, A., Paulini, M., Pedro, H., Perry, E., Preece, J., Quinton-Tulloch, M., Rodgers, F., Rosello, M., Ruffier, M., Seager, J., Sitnik, V., Szpak, M., Tate, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Ware, D., Wei, S., Williams, G., Winterbottom, A., Zarowiecki, M., Finn, R. D., & Flicek, P. (2022). Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic acids research, 50D996-D1003. https://doi.org/10.1093/nar/gkab1007
Yates, Andrew D, et al. "Ensembl Genomes 2022: an expanding genome resource for non-vertebrates." Nucleic acids research vol. 50 (2022): D996-D1003. doi: https://doi.org/10.1093/nar/gkab1007
Yates AD, Allen J, Amode RM, Azov AG, Barba M, Becerra A, Bhai J, Campbell LI, Carbajo Martinez M, Chakiachvili M, Chougule K, Christensen M, Contreras-Moreira B, Cuzick A, Da Rin Fioretto L, Davis P, De Silva NH, Diamantakis S, Dyer S, Elser J, Filippi CV, Gall A, Grigoriadis D, Guijarro-Clarke C, Gupta P, Hammond-Kosack KE, Howe KL, Jaiswal P, Kaikala V, Kumar V, Kumari S, Langridge N, Le T, Luypaert M, Maslen GL, Maurel T, Moore B, Muffato M, Mushtaq A, Naamati G, Naithani S, Olson A, Parker A, Paulini M, Pedro H, Perry E, Preece J, Quinton-Tulloch M, Rodgers F, Rosello M, Ruffier M, Seager J, Sitnik V, Szpak M, Tate J, Tello-Ruiz MK, Trevanion SJ, Urban M, Ware D, Wei S, Williams G, Winterbottom A, Zarowiecki M, Finn RD, Flicek P. Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res. 2022 Jan 07;50:D996-D1003. doi: 10.1093/nar/gkab1007. PMID: 34791415; PMCID: PMC8728113.
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