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The design, implementation, and evaluation of mpiBLAST

evaluation

Darling AE, Carey L, Feng WC.
GSID: PgSmLfTvkrIJ
AE Darling, L Carey, WC Feng - 2003 - osti.gov

mpiBLAST is an open-source parallelization of BLAST that achieves superlinear speed-up by segmenting a BLAST database and then having each node in a computational cluster search a unique portion of the database. Database segmentation permits each node to search...

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Darling, A. E., Carey, L., & Feng, W. C. (2003). The design, implementation, and evaluation of mpiBLAST (No. LA-UR-03-2862). Los Alamos National Laboratory.
Darling, Aaron E., Lucas Carey, and W. Chun Feng. The design, implementation, and evaluation of mpiBLAST. No. LA-UR-03-2862. Los Alamos National Laboratory, 2003.
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Perceived social status and learning experiences in social cognitive career theory

Stem career interventions

Dahling JJ, Thompson MN.
GSID: VBxAr0JClPgJ
MN Thompson, JJ Dahling - Journal of Vocational Behavior, 2012 - Elsevier

… career-related learning experiences in RIASEC domains with differing levels of prestige and implications of these results for developing interventions … Participants respond to the stem “…

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Thompson, M. N., & Dahling, J. J. (2012). Perceived social status and learning experiences in social cognitive career theory. Journal of Vocational Behavior, 80(2), 351-361.
Thompson, Mindi N., and Jason J. Dahling. "Perceived social status and learning experiences in social cognitive career theory." Journal of Vocational Behavior 80.2 (2012): 351-361.
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Artificial construction of the layered Ruddlesden-Popper manganite La2Sr2Mn3O10 by reflection high energy electron diffraction monitored pulsed laser deposition.

Journal of the American Chemical Society

Palgrave RG, Borisov P, Dyer MS, McMitchell SR, Darling GR, Claridge JB, Batuk M, Tan H, Tian H, Verbeeck J, Hadermann J, Rosseinsky MJ.
PMID: 22463768
J Am Chem Soc. 2012 May 09;134(18):7700-14. doi: 10.1021/ja211138x. Epub 2012 Apr 24.

Pulsed laser deposition has been used to artificially construct the n = 3 Ruddlesden-Popper structure La(2)Sr(2)Mn(3)O(10) in epitaxial thin film form by sequentially layering La(1-x)Sr(x)MnO(3) and SrO unit cells aided by in situ reflection high energy electron diffraction monitoring....

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Palgrave RG, Borisov P, Dyer MS, et al. Artificial construction of the layered Ruddlesden-Popper manganite La2Sr2Mn3O10 by reflection high energy electron diffraction monitored pulsed laser deposition. J Am Chem Soc. 2012;134(18):7700-14doi: 10.1021/ja211138x.
Palgrave, R. G., Borisov, P., Dyer, M. S., McMitchell, S. R., Darling, G. R., Claridge, J. B., Batuk, M., Tan, H., Tian, H., Verbeeck, J., Hadermann, J., & Rosseinsky, M. J. (2012). Artificial construction of the layered Ruddlesden-Popper manganite La2Sr2Mn3O10 by reflection high energy electron diffraction monitored pulsed laser deposition. Journal of the American Chemical Society, 134(18), 7700-14. https://doi.org/10.1021/ja211138x
Palgrave, Robert G, et al. "Artificial construction of the layered Ruddlesden-Popper manganite La2Sr2Mn3O10 by reflection high energy electron diffraction monitored pulsed laser deposition." Journal of the American Chemical Society vol. 134,18 (2012): 7700-14. doi: https://doi.org/10.1021/ja211138x
Palgrave RG, Borisov P, Dyer MS, McMitchell SR, Darling GR, Claridge JB, Batuk M, Tan H, Tian H, Verbeeck J, Hadermann J, Rosseinsky MJ. Artificial construction of the layered Ruddlesden-Popper manganite La2Sr2Mn3O10 by reflection high energy electron diffraction monitored pulsed laser deposition. J Am Chem Soc. 2012 May 09;134(18):7700-14. doi: 10.1021/ja211138x. Epub 2012 Apr 24. PMID: 22463768; PMCID: PMC3699890.
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A system for simultaneous near-infrared reflectance and transillumination imaging of occlusal carious lesions.

Proceedings of SPIE--the International Society for Optical Engineering

Simon JC, Darling CL, Fried D.
PMID: 27006524
Proc SPIE Int Soc Opt Eng. 2016 Feb 13;9692. doi: 10.1117/12.2218656. Epub 2016 Feb 29.

Clinicians need technologies to improve the diagnosis of questionable occlusal carious lesions (QOC's) and determine if decay has penetrated to the underlying dentin. Assessing lesion depth from near-infrared (NIR) images holds great potential due to the high transparency of...

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Simon JC, Darling CL, Fried D. A system for simultaneous near-infrared reflectance and transillumination imaging of occlusal carious lesions. Proc SPIE Int Soc Opt Eng. 2016;9692doi: 10.1117/12.2218656.
Simon, J. C., Darling, C. L., & Fried, D. (2016). A system for simultaneous near-infrared reflectance and transillumination imaging of occlusal carious lesions. Proceedings of SPIE--the International Society for Optical Engineering, 9692. https://doi.org/10.1117/12.2218656
Simon, Jacob C, et al. "A system for simultaneous near-infrared reflectance and transillumination imaging of occlusal carious lesions." Proceedings of SPIE--the International Society for Optical Engineering vol. 9692 (2016). doi: https://doi.org/10.1117/12.2218656
Simon JC, Darling CL, Fried D. A system for simultaneous near-infrared reflectance and transillumination imaging of occlusal carious lesions. Proc SPIE Int Soc Opt Eng. 2016 Feb 13;9692. doi: 10.1117/12.2218656. Epub 2016 Feb 29. PMID: 27006524; PMCID: PMC4799999.
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Assessment of cavitation in artificial approximal dental lesions with near-IR imaging.

Proceedings of SPIE--the International Society for Optical Engineering

Simon JC, Darling CL, Fried D.
PMID: 28626283
Proc SPIE Int Soc Opt Eng. 2017 Jan 28;10044. doi: 10.1117/12.2256701. Epub 2017 Feb 08.

Bitewing radiography is still considered state-of-the-art diagnostic technology for assessing cavitation within approximal carious dental lesions, even though radiographs cannot resolve cavitated surfaces but instead are used to measure lesion depth in order to predict cavitation. Clinicians need new...

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Simon JC, Darling CL, Fried D. Assessment of cavitation in artificial approximal dental lesions with near-IR imaging. Proc SPIE Int Soc Opt Eng. 2017;10044doi: 10.1117/12.2256701.
Simon, J. C., Darling, C. L., & Fried, D. (2017). Assessment of cavitation in artificial approximal dental lesions with near-IR imaging. Proceedings of SPIE--the International Society for Optical Engineering, 10044. https://doi.org/10.1117/12.2256701
Simon, Jacob C, et al. "Assessment of cavitation in artificial approximal dental lesions with near-IR imaging." Proceedings of SPIE--the International Society for Optical Engineering vol. 10044 (2017). doi: https://doi.org/10.1117/12.2256701
Simon JC, Darling CL, Fried D. Assessment of cavitation in artificial approximal dental lesions with near-IR imaging. Proc SPIE Int Soc Opt Eng. 2017 Jan 28;10044. doi: 10.1117/12.2256701. Epub 2017 Feb 08. PMID: 28626283; PMCID: PMC5473505.
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Attenuation of near-IR light through dentin at wavelengths from 1300-1650-nm.

Proceedings of SPIE--the International Society for Optical Engineering

Chan AC, Darling CL, Chan KH, Fried D.
PMID: 24839373
Proc SPIE Int Soc Opt Eng. 2014 Feb 18;8929:89290M. doi: 10.1117/12.2045629.

Light scattering in dental enamel decreases markedly from the UV to the near-IR and recent studies employing near-IR transillumination and reflectance imaging including optical coherence tomography indicate that this wavelength region is ideally suited for imaging dental caries due...

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Chan AC, Darling CL, Chan KH, et al. Attenuation of near-IR light through dentin at wavelengths from 1300-1650-nm. Proc SPIE Int Soc Opt Eng. 2014;8929:89290Mdoi: 10.1117/12.2045629.
Chan, A. C., Darling, C. L., Chan, K. H., & Fried, D. (2014). Attenuation of near-IR light through dentin at wavelengths from 1300-1650-nm. Proceedings of SPIE--the International Society for Optical Engineering, 892989290M. https://doi.org/10.1117/12.2045629
Chan, Andrew C, et al. "Attenuation of near-IR light through dentin at wavelengths from 1300-1650-nm." Proceedings of SPIE--the International Society for Optical Engineering vol. 8929 (2014): 89290M. doi: https://doi.org/10.1117/12.2045629
Chan AC, Darling CL, Chan KH, Fried D. Attenuation of near-IR light through dentin at wavelengths from 1300-1650-nm. Proc SPIE Int Soc Opt Eng. 2014 Feb 18;8929:89290M. doi: 10.1117/12.2045629. PMID: 24839373; PMCID: PMC4023555.
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Reported and predicted structures of Ba(Co,Nb)(1-δ)O₃ hexagonal perovskite phases.

Physical chemistry chemical physics : PCCP

Bradley KA, Collins C, Dyer MS, Claridge JB, Darling GR, Rosseinsky MJ.
PMID: 24871400
Phys Chem Chem Phys. 2014 Oct 21;16(39):21073-81. doi: 10.1039/c4cp01542h. Epub 2014 May 29.

The Extended Module Materials Assembly computational method for structure solution and prediction has been implemented for close-packed lattices. Exploring the family of B-site deficient materials in hexagonal perovskite barium cobalt niobates, it is found that the EMMA procedure returns...

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Bradley KA, Collins C, Dyer MS, et al. Reported and predicted structures of Ba(Co,Nb)(1-δ)O₃ hexagonal perovskite phases. Phys Chem Chem Phys. 2014;16(39):21073-81doi: 10.1039/c4cp01542h.
Bradley, K. A., Collins, C., Dyer, M. S., Claridge, J. B., Darling, G. R., & Rosseinsky, M. J. (2014). Reported and predicted structures of Ba(Co,Nb)(1-δ)O₃ hexagonal perovskite phases. Physical chemistry chemical physics : PCCP, 16(39), 21073-81. https://doi.org/10.1039/c4cp01542h
Bradley, Kathryn A, et al. "Reported and predicted structures of Ba(Co,Nb)(1-δ)O₃ hexagonal perovskite phases." Physical chemistry chemical physics : PCCP vol. 16,39 (2014): 21073-81. doi: https://doi.org/10.1039/c4cp01542h
Bradley KA, Collins C, Dyer MS, Claridge JB, Darling GR, Rosseinsky MJ. Reported and predicted structures of Ba(Co,Nb)(1-δ)O₃ hexagonal perovskite phases. Phys Chem Chem Phys. 2014 Oct 21;16(39):21073-81. doi: 10.1039/c4cp01542h. Epub 2014 May 29. PMID: 24871400.
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High contrast optical imaging methods for image guided laser ablation of dental caries lesions.

Proceedings of SPIE--the International Society for Optical Engineering

Lamantia NR, Tom H, Chan KH, Simon JC, Darling CL, Fried D.
PMID: 24791129
Proc SPIE Int Soc Opt Eng. 2014 Feb 18;8929. doi: 10.1117/12.2045683.

Laser based methods are well suited for automation and can be used to selectively remove dental caries to minimize the loss of healthy tissues and render the underlying enamel more resistant to acid dissolution. The purpose of this study...

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Lamantia NR, Tom H, Chan KH, et al. High contrast optical imaging methods for image guided laser ablation of dental caries lesions. Proc SPIE Int Soc Opt Eng. 2014;8929doi: 10.1117/12.2045683.
Lamantia, N. R., Tom, H., Chan, K. H., Simon, J. C., Darling, C. L., & Fried, D. (2014). High contrast optical imaging methods for image guided laser ablation of dental caries lesions. Proceedings of SPIE--the International Society for Optical Engineering, 8929. https://doi.org/10.1117/12.2045683
Lamantia, Nicole R, et al. "High contrast optical imaging methods for image guided laser ablation of dental caries lesions." Proceedings of SPIE--the International Society for Optical Engineering vol. 8929 (2014). doi: https://doi.org/10.1117/12.2045683
Lamantia NR, Tom H, Chan KH, Simon JC, Darling CL, Fried D. High contrast optical imaging methods for image guided laser ablation of dental caries lesions. Proc SPIE Int Soc Opt Eng. 2014 Feb 18;8929. doi: 10.1117/12.2045683. PMID: 24791129; PMCID: PMC4003568.
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The GALNT9, BNC1 and CCDC8 genes are frequently epigenetically dysregulated in breast tumours that metastasise to the brain.

Clinical epigenetics

Pangeni RP, Channathodiyil P, Huen DS, Eagles LW, Johal BK, Pasha D, Hadjistephanou N, Nevell O, Davies CL, Adewumi AI, Khanom H, Samra IS, Buzatto VC, Chandrasekaran P, Shinawi T, Dawson TP, Ashton KM, Davis C, Brodbelt AR, Jenkinson MD, Bièche I, Latif F, Darling JL, Warr TJ, Morris MR.
PMID: 26052355
Clin Epigenetics. 2015 May 27;7:57. doi: 10.1186/s13148-015-0089-x. eCollection 2015.

BACKGROUND: Tumour metastasis to the brain is a common and deadly development in certain cancers; 18-30 % of breast tumours metastasise to the brain. The contribution that gene silencing through epigenetic mechanisms plays in these metastatic tumours is not...

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Pangeni RP, Channathodiyil P, Huen DS, et al. The GALNT9, BNC1 and CCDC8 genes are frequently epigenetically dysregulated in breast tumours that metastasise to the brain. Clin Epigenetics. 2015;7:57doi: 10.1186/s13148-015-0089-x.
Pangeni, R. P., Channathodiyil, P., Huen, D. S., Eagles, L. W., Johal, B. K., Pasha, D., Hadjistephanou, N., Nevell, O., Davies, C. L., Adewumi, A. I., Khanom, H., Samra, I. S., Buzatto, V. C., Chandrasekaran, P., Shinawi, T., Dawson, T. P., Ashton, K. M., Davis, C., Brodbelt, A. R., Jenkinson, M. D., Bièche, I., Latif, F., Darling, J. L., Warr, T. J., & Morris, M. R. (2015). The GALNT9, BNC1 and CCDC8 genes are frequently epigenetically dysregulated in breast tumours that metastasise to the brain. Clinical epigenetics, 757. https://doi.org/10.1186/s13148-015-0089-x
Pangeni, Rajendra P, et al. "The GALNT9, BNC1 and CCDC8 genes are frequently epigenetically dysregulated in breast tumours that metastasise to the brain." Clinical epigenetics vol. 7 (2015): 57. doi: https://doi.org/10.1186/s13148-015-0089-x
Pangeni RP, Channathodiyil P, Huen DS, Eagles LW, Johal BK, Pasha D, Hadjistephanou N, Nevell O, Davies CL, Adewumi AI, Khanom H, Samra IS, Buzatto VC, Chandrasekaran P, Shinawi T, Dawson TP, Ashton KM, Davis C, Brodbelt AR, Jenkinson MD, Bièche I, Latif F, Darling JL, Warr TJ, Morris MR. The GALNT9, BNC1 and CCDC8 genes are frequently epigenetically dysregulated in breast tumours that metastasise to the brain. Clin Epigenetics. 2015 May 27;7:57. doi: 10.1186/s13148-015-0089-x. eCollection 2015. PMID: 26052355; PMCID: PMC4457099.
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Transillumination and reflectance probes for .

Proceedings of SPIE--the International Society for Optical Engineering

Simon JC, Lucas SA, Staninec M, Tom H, Chan KH, Darling CL, Fried D.
PMID: 24817803
Proc SPIE Int Soc Opt Eng. 2014 Feb 18;8929:89290D. doi: 10.1117/12.2045630.

Previous studies have demonstrated the utility of near infrared (NIR) imaging for caries detection employing transillumination and reflectance imaging geometries. Three intra-oral NIR imaging probes were fabricated for the acquisition of

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Simon JC, Lucas SA, Staninec M, et al. Transillumination and reflectance probes for . Proc SPIE Int Soc Opt Eng. 2014;8929:89290Ddoi: 10.1117/12.2045630.
Simon, J. C., Lucas, S. A., Staninec, M., Tom, H., Chan, K. H., Darling, C. L., & Fried, D. (2014). Transillumination and reflectance probes for . Proceedings of SPIE--the International Society for Optical Engineering, 892989290D. https://doi.org/10.1117/12.2045630
Simon, Jacob C, et al. "Transillumination and reflectance probes for ." Proceedings of SPIE--the International Society for Optical Engineering vol. 8929 (2014): 89290D. doi: https://doi.org/10.1117/12.2045630
Simon JC, Lucas SA, Staninec M, Tom H, Chan KH, Darling CL, Fried D. Transillumination and reflectance probes for . Proc SPIE Int Soc Opt Eng. 2014 Feb 18;8929:89290D. doi: 10.1117/12.2045630. PMID: 24817803; PMCID: PMC4013109.
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Assessment of remineralization in simulated enamel lesions via dehydration with near-IR reflectance imaging.

Proceedings of SPIE--the International Society for Optical Engineering

Lee RC, Darling CL, Fried D.
PMID: 25914494
Proc SPIE Int Soc Opt Eng. 2015 Feb 24;9306. doi: 10.1117/12.2083655.

Previous studies have demonstrated that near-IR imaging can be used to nondestructively monitor the severity of enamel lesions. Arrested lesions typically have a highly mineralized surface layer that reduces permeability and limits diffusion into the lesion. The purpose of...

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Lee RC, Darling CL, Fried D. Assessment of remineralization in simulated enamel lesions via dehydration with near-IR reflectance imaging. Proc SPIE Int Soc Opt Eng. 2015;9306doi: 10.1117/12.2083655.
Lee, R. C., Darling, C. L., & Fried, D. (2015). Assessment of remineralization in simulated enamel lesions via dehydration with near-IR reflectance imaging. Proceedings of SPIE--the International Society for Optical Engineering, 9306. https://doi.org/10.1117/12.2083655
Lee, Robert C, et al. "Assessment of remineralization in simulated enamel lesions via dehydration with near-IR reflectance imaging." Proceedings of SPIE--the International Society for Optical Engineering vol. 9306 (2015). doi: https://doi.org/10.1117/12.2083655
Lee RC, Darling CL, Fried D. Assessment of remineralization in simulated enamel lesions via dehydration with near-IR reflectance imaging. Proc SPIE Int Soc Opt Eng. 2015 Feb 24;9306. doi: 10.1117/12.2083655. PMID: 25914494; PMCID: PMC4405666.
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Sex in transition, 1900-1980.

Journal of youth and adolescence

Darling CA, Kallen DJ, Vandusen JE.
PMID: 24306834
J Youth Adolesc. 1984 Oct;13(5):385-99. doi: 10.1007/BF02088637.

Changes in the proportion of college-aged males and females participating in coital relationships are analyzed through a review of 35 studies conducted between 1903 and 1980. Two major trends are apparent: there has been a major increase in the...

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Darling CA, Kallen DJ, Vandusen JE. Sex in transition, 1900-1980. J Youth Adolesc. 1984;13(5):385-99doi: 10.1007/BF02088637.
Darling, C. A., Kallen, D. J., & Vandusen, J. E. (1984). Sex in transition, 1900-1980. Journal of youth and adolescence, 13(5), 385-99. https://doi.org/10.1007/BF02088637
Darling, C A, et al. "Sex in transition, 1900-1980." Journal of youth and adolescence vol. 13,5 (1984): 385-99. doi: https://doi.org/10.1007/BF02088637
Darling CA, Kallen DJ, Vandusen JE. Sex in transition, 1900-1980. J Youth Adolesc. 1984 Oct;13(5):385-99. doi: 10.1007/BF02088637. PMID: 24306834.
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Showing 1 to 12 of 311 entries