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Patterns of genetic diversity of the cryptogenic red alga Polysiphonia morrowii (Ceramiales, Rhodophyta) suggest multiple origins of the Atlantic populations.

Ecology and evolution

Geoffroy A, Destombe C, Kim B, Mauger S, Raffo MP, Kim MS, Le Gall L.
PMID: 27547343
Ecol Evol. 2016 Jul 19;6(16):5635-47. doi: 10.1002/ece3.2135. eCollection 2016 Aug.

The red alga Polysiphonia morrowii, native to the North Pacific (Northeast Asia), has recently been reported worldwide. To determine the origin of the French and Argentine populations of this introduced species, we compared samples from these two areas with...

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Geoffroy A, Destombe C, Kim B, et al. Patterns of genetic diversity of the cryptogenic red alga Polysiphonia morrowii (Ceramiales, Rhodophyta) suggest multiple origins of the Atlantic populations. Ecol Evol. 2016;6(16):5635-47doi: 10.1002/ece3.2135.
Geoffroy, A., Destombe, C., Kim, B., Mauger, S., Raffo, M. P., Kim, M. S., & Le Gall, L. (2016). Patterns of genetic diversity of the cryptogenic red alga Polysiphonia morrowii (Ceramiales, Rhodophyta) suggest multiple origins of the Atlantic populations. Ecology and evolution, 6(16), 5635-47. https://doi.org/10.1002/ece3.2135
Geoffroy, Alexandre, et al. "Patterns of genetic diversity of the cryptogenic red alga Polysiphonia morrowii (Ceramiales, Rhodophyta) suggest multiple origins of the Atlantic populations." Ecology and evolution vol. 6,16 (2016): 5635-47. doi: https://doi.org/10.1002/ece3.2135
Geoffroy A, Destombe C, Kim B, Mauger S, Raffo MP, Kim MS, Le Gall L. Patterns of genetic diversity of the cryptogenic red alga Polysiphonia morrowii (Ceramiales, Rhodophyta) suggest multiple origins of the Atlantic populations. Ecol Evol. 2016 Jul 19;6(16):5635-47. doi: 10.1002/ece3.2135. eCollection 2016 Aug. PMID: 27547343; PMCID: PMC4983580.
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Estimation of Markov random field prior parameters using Markov chain Monte Carlo maximum likelihood.

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society

Descombes X, Morris RD, Zerubia J, Berthod M.
PMID: 18267508
IEEE Trans Image Process. 1999;8(7):954-63. doi: 10.1109/83.772239.

Recent developments in statistics now allow maximum likelihood estimators for the parameters of Markov random fields (MRFs) to be constructed. We detail the theory required, and present an algorithm that is easily implemented and practical in terms of computation...

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Descombes X, Morris RD, Zerubia J, et al. Estimation of Markov random field prior parameters using Markov chain Monte Carlo maximum likelihood. IEEE Trans Image Process. 1999;8(7):954-63doi: 10.1109/83.772239.
Descombes, X., Morris, R. D., Zerubia, J., & Berthod, M. (1999). Estimation of Markov random field prior parameters using Markov chain Monte Carlo maximum likelihood. IEEE transactions on image processing : a publication of the IEEE Signal Processing Society, 8(7), 954-63. https://doi.org/10.1109/83.772239
Descombes, X, et al. "Estimation of Markov random field prior parameters using Markov chain Monte Carlo maximum likelihood." IEEE transactions on image processing : a publication of the IEEE Signal Processing Society vol. 8,7 (1999): 954-63. doi: https://doi.org/10.1109/83.772239
Descombes X, Morris RD, Zerubia J, Berthod M. Estimation of Markov random field prior parameters using Markov chain Monte Carlo maximum likelihood. IEEE Trans Image Process. 1999;8(7):954-63. doi: 10.1109/83.772239. PMID: 18267508.
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Novel murine dendritic cell lines: a powerful auxiliary tool for dendritic cell research.

Frontiers in immunology

Fuertes Marraco SA, Grosjean F, Duval A, Rosa M, Lavanchy C, Ashok D, Haller S, Otten LA, Steiner QG, Descombes P, Luber CA, Meissner F, Mann M, Szeles L, Reith W, Acha-Orbea H.
PMID: 23162549
Front Immunol. 2012 Nov 07;3:331. doi: 10.3389/fimmu.2012.00331. eCollection 2012.

Research in vitro facilitates discovery, screening, and pilot experiments, often preceding research in vivo. Several technical difficulties render Dendritic Cell (DC) research particularly challenging, including the low frequency of DC in vivo, thorough isolation requirements, and the vulnerability of...

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Fuertes Marraco SA, Grosjean F, Duval A, et al. Novel murine dendritic cell lines: a powerful auxiliary tool for dendritic cell research. Front Immunol. 2012;3:331doi: 10.3389/fimmu.2012.00331.
Fuertes Marraco, S. A., Grosjean, F., Duval, A., Rosa, M., Lavanchy, C., Ashok, D., Haller, S., Otten, L. A., Steiner, Q. G., Descombes, P., Luber, C. A., Meissner, F., Mann, M., Szeles, L., Reith, W., & Acha-Orbea, H. (2012). Novel murine dendritic cell lines: a powerful auxiliary tool for dendritic cell research. Frontiers in immunology, 3331. https://doi.org/10.3389/fimmu.2012.00331
Fuertes Marraco, Silvia A, et al. "Novel murine dendritic cell lines: a powerful auxiliary tool for dendritic cell research." Frontiers in immunology vol. 3 (2012): 331. doi: https://doi.org/10.3389/fimmu.2012.00331
Fuertes Marraco SA, Grosjean F, Duval A, Rosa M, Lavanchy C, Ashok D, Haller S, Otten LA, Steiner QG, Descombes P, Luber CA, Meissner F, Mann M, Szeles L, Reith W, Acha-Orbea H. Novel murine dendritic cell lines: a powerful auxiliary tool for dendritic cell research. Front Immunol. 2012 Nov 07;3:331. doi: 10.3389/fimmu.2012.00331. eCollection 2012. PMID: 23162549; PMCID: PMC3491238.
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Oral postdialysis cholecalciferol supplementation in patients on maintenance hemodialysis: a dose-response approach.

International journal of nephrology

Descombes E, Fellay B, Hemett OM, Magnin JL, Fellay G.
PMID: 24579049
Int J Nephrol. 2014;2014:597429. doi: 10.1155/2014/597429. Epub 2014 Jan 21.

The aim of the present study was to evaluate the dose of postdialysis cholecalciferol needed to maintain the 25-hydroxyvitamin D [25(OH)D] levels in the optimal range of 75-150 nmol/L. Twenty-six patients who had low baseline 25(OH)D levels (mean 27.5...

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Descombes E, Fellay B, Hemett OM, et al. Oral postdialysis cholecalciferol supplementation in patients on maintenance hemodialysis: a dose-response approach. Int J Nephrol. 2014;2014:597429doi: 10.1155/2014/597429.
Descombes, E., Fellay, B., Hemett, O. M., Magnin, J. L., & Fellay, G. (2014). Oral postdialysis cholecalciferol supplementation in patients on maintenance hemodialysis: a dose-response approach. International journal of nephrology, 2014597429. https://doi.org/10.1155/2014/597429
Descombes, Eric, et al. "Oral postdialysis cholecalciferol supplementation in patients on maintenance hemodialysis: a dose-response approach." International journal of nephrology vol. 2014 (2014): 597429. doi: https://doi.org/10.1155/2014/597429
Descombes E, Fellay B, Hemett OM, Magnin JL, Fellay G. Oral postdialysis cholecalciferol supplementation in patients on maintenance hemodialysis: a dose-response approach. Int J Nephrol. 2014;2014:597429. doi: 10.1155/2014/597429. Epub 2014 Jan 21. PMID: 24579049; PMCID: PMC3918706.
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Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain.

Genome announcements

Moine D, Kassam M, Baert L, Tang Y, Barretto C, Ngom Bru C, Klijn A, Descombes P.
PMID: 27013041
Genome Announc. 2016 Mar 24;4(2). doi: 10.1128/genomeA.00142-16.

Cronobacteris associated with infant infections and the consumption of reconstituted infant formula. Here we sequenced and closed six genomes ofC. condimenti(T),C. muytjensii(T),C. universalis(T),C. malonaticus(T),C. dublinensis(T), andC. sakazakiithat can be used as reference genomes in single nucleotide polymorphism (SNP)-based next-generation...

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Moine D, Kassam M, Baert L, et al. Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain. Genome Announc. 2016;4(2)doi: 10.1128/genomeA.00142-16.
Moine, D., Kassam, M., Baert, L., Tang, Y., Barretto, C., Ngom Bru, C., Klijn, A., & Descombes, P. (2016). Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain. Genome announcements, 4(2), . https://doi.org/10.1128/genomeA.00142-16
Moine, Deborah, et al. "Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain." Genome announcements vol. 4,2 (2016). doi: https://doi.org/10.1128/genomeA.00142-16
Moine D, Kassam M, Baert L, Tang Y, Barretto C, Ngom Bru C, Klijn A, Descombes P. Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain. Genome Announc. 2016 Mar 24;4(2). doi: 10.1128/genomeA.00142-16. PMID: 27013041; PMCID: PMC4807230.
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Combining niche shift and population genetic analyses predicts rapid phenotypic evolution during invasion.

Evolutionary applications

Sotka EE, Baumgardner AW, Bippus PM, Destombe C, Duermit EA, Endo H, Flanagan BA, Kamiya M, Lees LE, Murren CJ, Nakaoka M, Shainker SJ, Strand AE, Terada R, Valero M, Weinberger F, Krueger-Hadfield SA.
PMID: 29875819
Evol Appl. 2018 Feb 02;11(5):781-793. doi: 10.1111/eva.12592. eCollection 2018 Jun.

The rapid evolution of non-native species can facilitate invasion success, but recent reviews indicate that such microevolution rarely yields expansion of the climatic niche in the introduced habitats. However, because some invasions originate from a geographically restricted portion of...

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Sotka EE, Baumgardner AW, Bippus PM, et al. Combining niche shift and population genetic analyses predicts rapid phenotypic evolution during invasion. Evol Appl. 2018;11(5):781-793doi: 10.1111/eva.12592.
Sotka, E. E., Baumgardner, A. W., Bippus, P. M., Destombe, C., Duermit, E. A., Endo, H., Flanagan, B. A., Kamiya, M., Lees, L. E., Murren, C. J., Nakaoka, M., Shainker, S. J., Strand, A. E., Terada, R., Valero, M., Weinberger, F., & Krueger-Hadfield, S. A. (2018). Combining niche shift and population genetic analyses predicts rapid phenotypic evolution during invasion. Evolutionary applications, 11(5), 781-793. https://doi.org/10.1111/eva.12592
Sotka, Erik E, et al. "Combining niche shift and population genetic analyses predicts rapid phenotypic evolution during invasion." Evolutionary applications vol. 11,5 (2018): 781-793. doi: https://doi.org/10.1111/eva.12592
Sotka EE, Baumgardner AW, Bippus PM, Destombe C, Duermit EA, Endo H, Flanagan BA, Kamiya M, Lees LE, Murren CJ, Nakaoka M, Shainker SJ, Strand AE, Terada R, Valero M, Weinberger F, Krueger-Hadfield SA. Combining niche shift and population genetic analyses predicts rapid phenotypic evolution during invasion. Evol Appl. 2018 Feb 02;11(5):781-793. doi: 10.1111/eva.12592. eCollection 2018 Jun. PMID: 29875819; PMCID: PMC5978718.
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A Combined Analysis of Laser Optogalvanic and Fourier Transform Emission Spectra of NH2 near its Barrier to Linearity.

Journal of molecular spectroscopy

Destombes J, Hadj Bachir I, Huet TR, Vervloet M.
PMID: 9920709
J Mol Spectrosc. 1999 Feb;193(2):326-353. doi: 10.1006/jmsp.1998.7752.

The Ã2A1-&Xtilde;2B1 electronic transition of NH2 is reinvestigated in the region of its barrier to linearity. A detailed rotational analysis is performed on its laser optogalvanic spectrum recorded in the region 11 300-14 300 cm-1 and on its near...

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Destombes J, Hadj Bachir I, Huet TR, et al. A Combined Analysis of Laser Optogalvanic and Fourier Transform Emission Spectra of NH2 near its Barrier to Linearity. J Mol Spectrosc. 1999;193(2):326-353doi: 10.1006/jmsp.1998.7752.
Destombes, J., Hadj Bachir I, Huet, T. R., & Vervloet, M. (1999). A Combined Analysis of Laser Optogalvanic and Fourier Transform Emission Spectra of NH2 near its Barrier to Linearity. Journal of molecular spectroscopy, 193(2), 326-353. https://doi.org/10.1006/jmsp.1998.7752
Destombes, et al. "A Combined Analysis of Laser Optogalvanic and Fourier Transform Emission Spectra of NH2 near its Barrier to Linearity." Journal of molecular spectroscopy vol. 193,2 (1999): 326-353. doi: https://doi.org/10.1006/jmsp.1998.7752
Destombes J, Hadj Bachir I, Huet TR, Vervloet M. A Combined Analysis of Laser Optogalvanic and Fourier Transform Emission Spectra of NH2 near its Barrier to Linearity. J Mol Spectrosc. 1999 Feb;193(2):326-353. doi: 10.1006/jmsp.1998.7752. PMID: 9920709.
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Compound- and fiber type-selective requirement of AMPKγ3 for insulin-independent glucose uptake in skeletal muscle.

Molecular metabolism

Rhein P, Desjardins EM, Rong P, Ahwazi D, Bonhoure N, Stolte J, Santos MD, Ovens AJ, Ehrlich AM, Sanchez Garcia JL, Ouyang Q, Yabut JM, Kjolby M, Membrez M, Jessen N, Oakhill JS, Treebak JT, Maire P, Scott JW, Sanders MJ, Descombes P, Chen S, Steinberg GR, Sakamoto K.
PMID: 33798773
Mol Metab. 2021 Sep;51:101228. doi: 10.1016/j.molmet.2021.101228. Epub 2021 Mar 30.

OBJECTIVE: The metabolic master-switch AMP-activated protein kinase (AMPK) mediates insulin-independent glucose uptake in muscle and regulates the metabolic activity of brown and beige adipose tissue (BAT). The regulatory AMPKγ3 isoform is uniquely expressed in skeletal muscle and potentially in...

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Rhein P, Desjardins EM, Rong P, et al. Compound- and fiber type-selective requirement of AMPKγ3 for insulin-independent glucose uptake in skeletal muscle. Mol Metab. 2021;51:101228doi: 10.1016/j.molmet.2021.101228.
Rhein, P., Desjardins, E. M., Rong, P., Ahwazi, D., Bonhoure, N., Stolte, J., Santos, M. D., Ovens, A. J., Ehrlich, A. M., Sanchez Garcia, J. L., Ouyang, Q., Yabut, J. M., Kjolby, M., Membrez, M., Jessen, N., Oakhill, J. S., Treebak, J. T., Maire, P., Scott, J. W., Sanders, M. J., Descombes, P., Chen, S., Steinberg, G. R., & Sakamoto, K. (2021). Compound- and fiber type-selective requirement of AMPKγ3 for insulin-independent glucose uptake in skeletal muscle. Molecular metabolism, 51101228. https://doi.org/10.1016/j.molmet.2021.101228
Rhein, Philipp, et al. "Compound- and fiber type-selective requirement of AMPKγ3 for insulin-independent glucose uptake in skeletal muscle." Molecular metabolism vol. 51 (2021): 101228. doi: https://doi.org/10.1016/j.molmet.2021.101228
Rhein P, Desjardins EM, Rong P, Ahwazi D, Bonhoure N, Stolte J, Santos MD, Ovens AJ, Ehrlich AM, Sanchez Garcia JL, Ouyang Q, Yabut JM, Kjolby M, Membrez M, Jessen N, Oakhill JS, Treebak JT, Maire P, Scott JW, Sanders MJ, Descombes P, Chen S, Steinberg GR, Sakamoto K. Compound- and fiber type-selective requirement of AMPKγ3 for insulin-independent glucose uptake in skeletal muscle. Mol Metab. 2021 Sep;51:101228. doi: 10.1016/j.molmet.2021.101228. Epub 2021 Mar 30. PMID: 33798773; PMCID: PMC8381060.
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NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework.

Briefings in bioinformatics

Duboc V, Pratella D, Milanesio M, Boudjarane J, Descombes S, Paquis-Flucklinger V, Bottini S.
PMID: 34529041
Brief Bioinform. 2021 Sep 15; doi: 10.1093/bib/bbab380. Epub 2021 Sep 15.

Noninvasive prenatal testing (NIPT) consists of determining fetal aneuploidies by quantifying copy number alteration from the sequencing of cell-free DNA (cfDNA) from maternal blood. Due to the presence of cfDNA of fetal origin in maternal blood, in silico approaches...

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Duboc V, Pratella D, Milanesio M, et al. NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework. Brief Bioinform. 2021;doi: 10.1093/bib/bbab380.
Duboc, V., Pratella, D., Milanesio, M., Boudjarane, J., Descombes, S., Paquis-Flucklinger, V., & Bottini, S. (2021). NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework. Briefings in bioinformatics, . https://doi.org/10.1093/bib/bbab380
Duboc, Véronique, et al. "NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework." Briefings in bioinformatics vol. (2021). doi: https://doi.org/10.1093/bib/bbab380
Duboc V, Pratella D, Milanesio M, Boudjarane J, Descombes S, Paquis-Flucklinger V, Bottini S. NiPTUNE: an automated pipeline for noninvasive prenatal testing in an accurate, integrative and flexible framework. Brief Bioinform. 2021 Sep 15; doi: 10.1093/bib/bbab380. Epub 2021 Sep 15. PMID: 34529041.
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Titin-truncating mutations associated with dilated cardiomyopathy alter length-dependent activation and its modulation via phosphorylation.

Cardiovascular research

Vikhorev PG, Vikhoreva NN, Yeung W, Li A, Lal S, Dos Remedios CG, Blair CA, Guglin M, Campbell KS, Yacoub MH, de Tombe P, Marston SB.
PMID: 33135063
Cardiovasc Res. 2022 Jan 07;118(1):241-253. doi: 10.1093/cvr/cvaa316.

AIMS : Dilated cardiomyopathy (DCM) is associated with mutations in many genes encoding sarcomere proteins. Truncating mutations in the titin gene TTN are the most frequent. Proteomic and functional characterizations are required to elucidate the origin of the disease...

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Vikhorev PG, Vikhoreva NN, Yeung W, et al. Titin-truncating mutations associated with dilated cardiomyopathy alter length-dependent activation and its modulation via phosphorylation. Cardiovasc Res. 2022;118(1):241-253doi: 10.1093/cvr/cvaa316.
Vikhorev, P. G., Vikhoreva, N. N., Yeung, W., Li, A., Lal, S., Dos Remedios, C. G., Blair, C. A., Guglin, M., Campbell, K. S., Yacoub, M. H., de Tombe, P., & Marston, S. B. (2022). Titin-truncating mutations associated with dilated cardiomyopathy alter length-dependent activation and its modulation via phosphorylation. Cardiovascular research, 118(1), 241-253. https://doi.org/10.1093/cvr/cvaa316
Vikhorev, Petr G, et al. "Titin-truncating mutations associated with dilated cardiomyopathy alter length-dependent activation and its modulation via phosphorylation." Cardiovascular research vol. 118,1 (2022): 241-253. doi: https://doi.org/10.1093/cvr/cvaa316
Vikhorev PG, Vikhoreva NN, Yeung W, Li A, Lal S, Dos Remedios CG, Blair CA, Guglin M, Campbell KS, Yacoub MH, de Tombe P, Marston SB. Titin-truncating mutations associated with dilated cardiomyopathy alter length-dependent activation and its modulation via phosphorylation. Cardiovasc Res. 2022 Jan 07;118(1):241-253. doi: 10.1093/cvr/cvaa316. PMID: 33135063.
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Esophageal perforation in eosinophilic esophagitis: five cases in children.

Endoscopy international open

Donnet C, Destombe S, Lachaux A, Michaud L, Triolo V, Heissat S, Stephan JL, Patural H.
PMID: 32617387
Endosc Int Open. 2020 Jul;8(7):E830-E833. doi: 10.1055/a-0914-2711. Epub 2020 Jun 16.

No abstract available.

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Donnet C, Destombe S, Lachaux A, et al. Esophageal perforation in eosinophilic esophagitis: five cases in children. Endosc Int Open. 2020;8(7):E830-E833doi: 10.1055/a-0914-2711.
Donnet, C., Destombe, S., Lachaux, A., Michaud, L., Triolo, V., Heissat, S., Stephan, J. L., & Patural, H. (2020). Esophageal perforation in eosinophilic esophagitis: five cases in children. Endoscopy international open, 8(7), E830-E833. https://doi.org/10.1055/a-0914-2711
Donnet, Camille, et al. "Esophageal perforation in eosinophilic esophagitis: five cases in children." Endoscopy international open vol. 8,7 (2020): E830-E833. doi: https://doi.org/10.1055/a-0914-2711
Donnet C, Destombe S, Lachaux A, Michaud L, Triolo V, Heissat S, Stephan JL, Patural H. Esophageal perforation in eosinophilic esophagitis: five cases in children. Endosc Int Open. 2020 Jul;8(7):E830-E833. doi: 10.1055/a-0914-2711. Epub 2020 Jun 16. PMID: 32617387; PMCID: PMC7297612.
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Acute Renal Failure in a Patient with Rivaroxaban-Induced Hypersensitivity Syndrome: A Case Report with a Review of the Literature and of Pharmacovigilance Registries.

Case reports in nephrology

Marcelino G, Hemett OM, Descombes E.
PMID: 32665869
Case Rep Nephrol. 2020 Jun 30;2020:6940183. doi: 10.1155/2020/6940183. eCollection 2020.

Direct oral anticoagulants (DOACs) are among the most commonly prescribed medications, and DOAC-associated kidney dysfunction may be a problem that is underrecognized by clinicians. We report on the case of an 82-year-old patient who, two weeks after the prescription...

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Marcelino G, Hemett OM, Descombes E. Acute Renal Failure in a Patient with Rivaroxaban-Induced Hypersensitivity Syndrome: A Case Report with a Review of the Literature and of Pharmacovigilance Registries. Case Rep Nephrol. 2020;2020:6940183doi: 10.1155/2020/6940183.
Marcelino, G., Hemett, O. M., & Descombes, E. (2020). Acute Renal Failure in a Patient with Rivaroxaban-Induced Hypersensitivity Syndrome: A Case Report with a Review of the Literature and of Pharmacovigilance Registries. Case reports in nephrology, 20206940183. https://doi.org/10.1155/2020/6940183
Marcelino, Gisela, et al. "Acute Renal Failure in a Patient with Rivaroxaban-Induced Hypersensitivity Syndrome: A Case Report with a Review of the Literature and of Pharmacovigilance Registries." Case reports in nephrology vol. 2020 (2020): 6940183. doi: https://doi.org/10.1155/2020/6940183
Marcelino G, Hemett OM, Descombes E. Acute Renal Failure in a Patient with Rivaroxaban-Induced Hypersensitivity Syndrome: A Case Report with a Review of the Literature and of Pharmacovigilance Registries. Case Rep Nephrol. 2020 Jun 30;2020:6940183. doi: 10.1155/2020/6940183. eCollection 2020. PMID: 32665869; PMCID: PMC7349618.
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