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Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth.

Frontiers in microbiology

Qin Y, Pan X, Kubicek C, Druzhinina I, Chenthamara K, Labbé J, Yuan Z.
PMID: 28220113
Front Microbiol. 2017 Feb 06;8:158. doi: 10.3389/fmicb.2017.00158. eCollection 2017.

Similar to mycorrhizal mutualists, the rhizospheric and endophytic fungi are also considered to act as active regulators of host fitness (e.g., nutrition and stress tolerance). Despite considerable work in selected model systems, it is generally poorly understood how plant-associated...

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Qin Y, Pan X, Kubicek C, et al. Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth. Front Microbiol. 2017;8:158doi: 10.3389/fmicb.2017.00158.
Qin, Y., Pan, X., Kubicek, C., Druzhinina, I., Chenthamara, K., Labbé, J., & Yuan, Z. (2017). Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth. Frontiers in microbiology, 8158. https://doi.org/10.3389/fmicb.2017.00158
Qin, Yuan, et al. "Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth." Frontiers in microbiology vol. 8 (2017): 158. doi: https://doi.org/10.3389/fmicb.2017.00158
Qin Y, Pan X, Kubicek C, Druzhinina I, Chenthamara K, Labbé J, Yuan Z. Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth. Front Microbiol. 2017 Feb 06;8:158. doi: 10.3389/fmicb.2017.00158. eCollection 2017. PMID: 28220113; PMCID: PMC5292420.
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Hierarchical, guided self-assembly of preselected carbon nanotubes for the controlled fabrication of CNT structures by electrooxidative nanolithography.

Langmuir : the ACS journal of surfaces and colloids

Druzhinina TS, Höppener C, Hoeppener S, Schubert US.
PMID: 23638964
Langmuir. 2013 Jun 18;29(24):7515-20. doi: 10.1021/la4000878. Epub 2013 Jun 03.

A fully controllable process for the fabrication of carbon nanotube assemblies is presented on the basis of a sequential electrochemical oxidation lithography process. This approach utilizes the local chemical conversion of a n-octadecyltrichlorosilane self-assembled monolayer into a template featuring...

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Druzhinina TS, Höppener C, Hoeppener S, et al. Hierarchical, guided self-assembly of preselected carbon nanotubes for the controlled fabrication of CNT structures by electrooxidative nanolithography. Langmuir. 2013;29(24):7515-20doi: 10.1021/la4000878.
Druzhinina, T. S., Höppener, C., Hoeppener, S., & Schubert, U. S. (2013). Hierarchical, guided self-assembly of preselected carbon nanotubes for the controlled fabrication of CNT structures by electrooxidative nanolithography. Langmuir : the ACS journal of surfaces and colloids, 29(24), 7515-20. https://doi.org/10.1021/la4000878
Druzhinina, Tamara S, et al. "Hierarchical, guided self-assembly of preselected carbon nanotubes for the controlled fabrication of CNT structures by electrooxidative nanolithography." Langmuir : the ACS journal of surfaces and colloids vol. 29,24 (2013): 7515-20. doi: https://doi.org/10.1021/la4000878
Druzhinina TS, Höppener C, Hoeppener S, Schubert US. Hierarchical, guided self-assembly of preselected carbon nanotubes for the controlled fabrication of CNT structures by electrooxidative nanolithography. Langmuir. 2013 Jun 18;29(24):7515-20. doi: 10.1021/la4000878. Epub 2013 Jun 03. PMID: 23638964.
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Micromachined Fabry-Pérot interferometer with embedded nanochannels for nanoscale fluid dynamics.

Nano letters

van Delft KM, Eijkel JC, Mijatovic D, Druzhinina TS, Rathgen H, Tas NR, van den Berg A, Mugele F.
PMID: 17297999
Nano Lett. 2007 Feb;7(2):345-50. doi: 10.1021/nl062447x.

We describe a microfabricated Fabry-Pérot interferometer with nanochannels of various heights between 6 and 20 nm embedded in its cavity. By multiple beam interferometry, the device enables the study of liquid behavior in the nanochannels without using fluorescent substances....

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van Delft KM, Eijkel JC, Mijatovic D, et al. Micromachined Fabry-Pérot interferometer with embedded nanochannels for nanoscale fluid dynamics. Nano Lett. 2007;7(2):345-50doi: 10.1021/nl062447x.
van Delft, K. M., Eijkel, J. C., Mijatovic, D., Druzhinina, T. S., Rathgen, H., Tas, N. R., van den Berg, A., & Mugele, F. (2007). Micromachined Fabry-Pérot interferometer with embedded nanochannels for nanoscale fluid dynamics. Nano letters, 7(2), 345-50. https://doi.org/10.1021/nl062447x
van Delft, Koen M, et al. "Micromachined Fabry-Pérot interferometer with embedded nanochannels for nanoscale fluid dynamics." Nano letters vol. 7,2 (2007): 345-50. doi: https://doi.org/10.1021/nl062447x
van Delft KM, Eijkel JC, Mijatovic D, Druzhinina TS, Rathgen H, Tas NR, van den Berg A, Mugele F. Micromachined Fabry-Pérot interferometer with embedded nanochannels for nanoscale fluid dynamics. Nano Lett. 2007 Feb;7(2):345-50. doi: 10.1021/nl062447x. PMID: 17297999.
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New design concepts for the fabrication of nanometric gap structures: electrochemical oxidation of OTS mono- and bilayer structures.

Small (Weinheim an der Bergstrasse, Germany)

Druzhinina TS, Hoeppener S, Schubert US.
PMID: 22228708
Small. 2012 Mar 26;8(6):852-7. doi: 10.1002/smll.201101842. Epub 2012 Jan 09.

No abstract available.

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Druzhinina TS, Hoeppener S, Schubert US. New design concepts for the fabrication of nanometric gap structures: electrochemical oxidation of OTS mono- and bilayer structures. Small. 2012;8(6):852-7doi: 10.1002/smll.201101842.
Druzhinina, T. S., Hoeppener, S., & Schubert, U. S. (2012). New design concepts for the fabrication of nanometric gap structures: electrochemical oxidation of OTS mono- and bilayer structures. Small (Weinheim an der Bergstrasse, Germany), 8(6), 852-7. https://doi.org/10.1002/smll.201101842
Druzhinina, Tamara S, et al. "New design concepts for the fabrication of nanometric gap structures: electrochemical oxidation of OTS mono- and bilayer structures." Small (Weinheim an der Bergstrasse, Germany) vol. 8,6 (2012): 852-7. doi: https://doi.org/10.1002/smll.201101842
Druzhinina TS, Hoeppener S, Schubert US. New design concepts for the fabrication of nanometric gap structures: electrochemical oxidation of OTS mono- and bilayer structures. Small. 2012 Mar 26;8(6):852-7. doi: 10.1002/smll.201101842. Epub 2012 Jan 09. PMID: 22228708.
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[No title available]

ZooKeys

Laciny A, Zettel H, Kopchinskiy A, Pretzer C, Pal A, Salim KA, Rahimi MJ, Hoenigsberger M, Lim L, Jaitrong W, Druzhinina IS.
PMID: 29706783
Zookeys. 2018 Apr 19;(751):1-40. doi: 10.3897/zookeys.751.22661. eCollection 2018.

A taxonomic description of all castes of

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Laciny A, Zettel H, Kopchinskiy A, et al. . Zookeys. 2018;(751):1-40doi: 10.3897/zookeys.751.22661.
Laciny, A., Zettel, H., Kopchinskiy, A., Pretzer, C., Pal, A., Salim, K. A., Rahimi, M. J., Hoenigsberger, M., Lim, L., Jaitrong, W., & Druzhinina, I. S. (2018). . ZooKeys, (751), 1-40. https://doi.org/10.3897/zookeys.751.22661
Laciny, Alice, et al. "." ZooKeys vol. ,751 (2018): 1-40. doi: https://doi.org/10.3897/zookeys.751.22661
Laciny A, Zettel H, Kopchinskiy A, Pretzer C, Pal A, Salim KA, Rahimi MJ, Hoenigsberger M, Lim L, Jaitrong W, Druzhinina IS. . Zookeys. 2018 Apr 19;(751):1-40. doi: 10.3897/zookeys.751.22661. eCollection 2018. PMID: 29706783; PMCID: PMC5919914.
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Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus .

Frontiers in microbiology

Marik T, Tyagi C, Balázs D, Urbán P, Szepesi Á, Bakacsy L, Endre G, Rakk D, Szekeres A, Andersson MA, Salonen H, Druzhinina IS, Vágvölgyi C, Kredics L.
PMID: 31293557
Front Microbiol. 2019 Jun 26;10:1434. doi: 10.3389/fmicb.2019.01434. eCollection 2019.

This study examined the structural diversity and bioactivity of peptaibol compounds produced by species from the phylogenetically separated Longibrachiatum Clade of the filamentous fungal genus

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Marik T, Tyagi C, Balázs D, et al. Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus . Front Microbiol. 2019;10:1434doi: 10.3389/fmicb.2019.01434.
Marik, T., Tyagi, C., Balázs, D., Urbán, P., Szepesi, �. �., Bakacsy, L., Endre, G., Rakk, D., Szekeres, A., Andersson, M. A., Salonen, H., Druzhinina, I. S., Vágvölgyi, C., & Kredics, L. (2019). Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus . Frontiers in microbiology, 101434. https://doi.org/10.3389/fmicb.2019.01434
Marik, Tamás, et al. "Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus ." Frontiers in microbiology vol. 10 (2019): 1434. doi: https://doi.org/10.3389/fmicb.2019.01434
Marik T, Tyagi C, Balázs D, Urbán P, Szepesi Á, Bakacsy L, Endre G, Rakk D, Szekeres A, Andersson MA, Salonen H, Druzhinina IS, Vágvölgyi C, Kredics L. Structural Diversity and Bioactivities of Peptaibol Compounds From the Longibrachiatum Clade of the Filamentous Fungal Genus . Front Microbiol. 2019 Jun 26;10:1434. doi: 10.3389/fmicb.2019.01434. eCollection 2019. PMID: 31293557; PMCID: PMC6606783.
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Correction: Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus.

The ISME journal

Yuan Z, Druzhinina IS, Gibbons JG, Zhong Z, Van de Peer Y, Rodriguez RJ, Liu Z, Wang X, Wei H, Wu Q, Wang J, Shi G, Cai F, Peng L, Martin FM.
PMID: 34408269
ISME J. 2022 Jan;16(1):321. doi: 10.1038/s41396-021-01083-w.

No abstract available.

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Yuan Z, Druzhinina IS, Gibbons JG, et al. Correction: Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. ISME J. 2022;16(1):321doi: 10.1038/s41396-021-01083-w.
Yuan, Z., Druzhinina, I. S., Gibbons, J. G., Zhong, Z., Van de Peer, Y., Rodriguez, R. J., Liu, Z., Wang, X., Wei, H., Wu, Q., Wang, J., Shi, G., Cai, F., Peng, L., & Martin, F. M. (2022). Correction: Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. The ISME journal, 16(1), 321. https://doi.org/10.1038/s41396-021-01083-w
Yuan, Zhilin, et al. "Correction: Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus." The ISME journal vol. 16,1 (2022): 321. doi: https://doi.org/10.1038/s41396-021-01083-w
Yuan Z, Druzhinina IS, Gibbons JG, Zhong Z, Van de Peer Y, Rodriguez RJ, Liu Z, Wang X, Wei H, Wu Q, Wang J, Shi G, Cai F, Peng L, Martin FM. Correction: Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. ISME J. 2022 Jan;16(1):321. doi: 10.1038/s41396-021-01083-w. PMID: 34408269.
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Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus.

The ISME journal

Yuan Z, Druzhinina IS, Gibbons JG, Zhong Z, Van de Peer Y, Rodriguez RJ, Liu Z, Wang X, Wei H, Wu Q, Wang J, Shi G, Cai F, Peng L, Martin FM.
PMID: 34108667
ISME J. 2021 Dec;15(12):3468-3479. doi: 10.1038/s41396-021-01023-8. Epub 2021 Jun 09.

Understanding how organisms adapt to extreme living conditions is central to evolutionary biology. Dark septate endophytes (DSEs) constitute an important component of the root mycobiome and they are often able to alleviate host abiotic stresses. Here, we investigated the...

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Yuan Z, Druzhinina IS, Gibbons JG, et al. Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. ISME J. 2021;15(12):3468-3479doi: 10.1038/s41396-021-01023-8.
Yuan, Z., Druzhinina, I. S., Gibbons, J. G., Zhong, Z., Van de Peer, Y., Rodriguez, R. J., Liu, Z., Wang, X., Wei, H., Wu, Q., Wang, J., Shi, G., Cai, F., Peng, L., & Martin, F. M. (2021). Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. The ISME journal, 15(12), 3468-3479. https://doi.org/10.1038/s41396-021-01023-8
Yuan, Zhilin, et al. "Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus." The ISME journal vol. 15,12 (2021): 3468-3479. doi: https://doi.org/10.1038/s41396-021-01023-8
Yuan Z, Druzhinina IS, Gibbons JG, Zhong Z, Van de Peer Y, Rodriguez RJ, Liu Z, Wang X, Wei H, Wu Q, Wang J, Shi G, Cai F, Peng L, Martin FM. Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus. ISME J. 2021 Dec;15(12):3468-3479. doi: 10.1038/s41396-021-01023-8. Epub 2021 Jun 09. PMID: 34108667; PMCID: PMC8629976.
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Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.

Life (Basel, Switzerland)

Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, Kubressoian T, Miklós I, Miskei M, Muggia L, Northen T, Novak-Babič M, Pennacchio C, Pfliegler WP, Pòcsi I, Prigione V, Riquelme M, Segata N, Schumacher J, Shelest E, Sterflinger K, Tesei D, U'Ren JM, Varese GC, Vázquez-Campos X, Vicente VA, Souza EM, Zalar P, Walker AK, Stajich JE.
PMID: 33352712
Life (Basel). 2020 Dec 19;10(12). doi: 10.3390/life10120362.

The polyphyletic group of black fungi within the Ascomycota (Arthoniomycetes, Dothideomycetes, and Eurotiomycetes) is ubiquitous in natural and anthropogenic habitats. Partly because of their dark, melanin-based pigmentation, black fungi are resistant to stresses including UV- and ionizing-radiation, heat and...

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Selbmann L, Benkő Z, Coleine C, et al. Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel). 2020;10(12)doi: 10.3390/life10120362.
Selbmann, L., Benkő, Z., Coleine, C., de Hoog, S., Donati, C., Druzhinina, I., Emri, T., Ettinger, C. L., Gladfelter, A. S., Gorbushina, A. A., Grigoriev, I. V., Grube, M., Gunde-Cimerman, N., Karányi, Z. �. �., Kocsis, B., Kubressoian, T., Miklós, I., Miskei, M., Muggia, L., Northen, T., Novak-Babič, M., Pennacchio, C., Pfliegler, W. P., Pòcsi, I., Prigione, V., Riquelme, M., Segata, N., Schumacher, J., Shelest, E., Sterflinger, K., Tesei, D., U'Ren, J. M., Varese, G. C., Vázquez-Campos, X., Vicente, V. A., Souza, E. M., Zalar, P., Walker, A. K., & Stajich, J. E. (2020). Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel, Switzerland), 10(12), . https://doi.org/10.3390/life10120362
Selbmann, Laura, et al. "Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES." Life (Basel, Switzerland) vol. 10,12 (2020). doi: https://doi.org/10.3390/life10120362
Selbmann L, Benkő Z, Coleine C, de Hoog S, Donati C, Druzhinina I, Emri T, Ettinger CL, Gladfelter AS, Gorbushina AA, Grigoriev IV, Grube M, Gunde-Cimerman N, Karányi ZÁ, Kocsis B, Kubressoian T, Miklós I, Miskei M, Muggia L, Northen T, Novak-Babič M, Pennacchio C, Pfliegler WP, Pòcsi I, Prigione V, Riquelme M, Segata N, Schumacher J, Shelest E, Sterflinger K, Tesei D, U'Ren JM, Varese GC, Vázquez-Campos X, Vicente VA, Souza EM, Zalar P, Walker AK, Stajich JE. Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES. Life (Basel). 2020 Dec 19;10(12). doi: 10.3390/life10120362. PMID: 33352712; PMCID: PMC7767062.
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Experimental observation of quantum reflection far from threshold.

Physical review letters

Druzhinina V, DeKieviet M.
PMID: 14611579
Phys Rev Lett. 2003 Nov 07;91(19):193202. doi: 10.1103/PhysRevLett.91.193202. Epub 2003 Nov 06.

We present first experimental evidence for quantum reflection, originating exclusively from an attractive potential between an atom and a solid surface, at energies far from the threshold E(i)-->0. The system of light and stable 3He atoms scattering from an...

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Druzhinina V, DeKieviet M. Experimental observation of quantum reflection far from threshold. Phys Rev Lett. 2003;91(19):193202doi: 10.1103/PhysRevLett.91.193202.
Druzhinina, V., & DeKieviet, M. (2003). Experimental observation of quantum reflection far from threshold. Physical review letters, 91(19), 193202. https://doi.org/10.1103/PhysRevLett.91.193202
Druzhinina, V, and DeKieviet, M. "Experimental observation of quantum reflection far from threshold." Physical review letters vol. 91,19 (2003): 193202. doi: https://doi.org/10.1103/PhysRevLett.91.193202
Druzhinina V, DeKieviet M. Experimental observation of quantum reflection far from threshold. Phys Rev Lett. 2003 Nov 07;91(19):193202. doi: 10.1103/PhysRevLett.91.193202. Epub 2003 Nov 06. PMID: 14611579.
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Trichoderma brevicompactum sp. nov.

Mycologia

Kraus GF, Druzhinina I, Gams W, Bissett J, Zafari D, Szakacs G, Koptchinski A, Prillinger H, Zare R, Kubicek CP.
PMID: 21148926
Mycologia. 2004 Sep-Oct;96(5):1059-73.

Trichoderma brevicompactum, a new species, was isolated from soil or tree bark in North, Central and South America, including the Caribbean Islands, and southwestern and southeastern Asia. Morphological and physiological characters, the internal transcribed spacer regions of the rDNA...

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Kraus GF, Druzhinina I, Gams W, et al. Trichoderma brevicompactum sp. nov. Mycologia. 2004;96(5):1059-73
Kraus, G. F., Druzhinina, I., Gams, W., Bissett, J., Zafari, D., Szakacs, G., Koptchinski, A., Prillinger, H., Zare, R., & Kubicek, C. P. (2004). Trichoderma brevicompactum sp. nov. Mycologia, 96(5), 1059-73.
Kraus, Günther F, et al. "Trichoderma brevicompactum sp. nov." Mycologia vol. 96,5 (2004): 1059-73.
Kraus GF, Druzhinina I, Gams W, Bissett J, Zafari D, Szakacs G, Koptchinski A, Prillinger H, Zare R, Kubicek CP. Trichoderma brevicompactum sp. nov. Mycologia. 2004 Sep-Oct;96(5):1059-73. PMID: 21148926.
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Author Correction: Fungal taxonomy and sequence-based nomenclature.

Nature microbiology

Lücking R, Aime MC, Robbertse B, Miller AN, Aoki T, Ariyawansa HA, Cardinali G, Crous PW, Druzhinina IS, Geiser DM, Hawksworth DL, Hyde KD, Irinyi L, Jeewon R, Johnston PR, Kirk PM, Malosso E, May TW, Meyer W, Nilsson HR, Öpik M, Robert V, Stadler M, Thines M, Vu D, Yurkov AM, Zhang N, Schoch CL.
PMID: 34045712
Nat Microbiol. 2021 Jul;6(7):971. doi: 10.1038/s41564-021-00921-z.

No abstract available.

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Lücking R, Aime MC, Robbertse B, et al. Author Correction: Fungal taxonomy and sequence-based nomenclature. Nat Microbiol. 2021;6(7):971doi: 10.1038/s41564-021-00921-z.
Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T., Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Nilsson, H. R., Öpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A. M., Zhang, N., & Schoch, C. L. (2021). Author Correction: Fungal taxonomy and sequence-based nomenclature. Nature microbiology, 6(7), 971. https://doi.org/10.1038/s41564-021-00921-z
Lücking, Robert, et al. "Author Correction: Fungal taxonomy and sequence-based nomenclature." Nature microbiology vol. 6,7 (2021): 971. doi: https://doi.org/10.1038/s41564-021-00921-z
Lücking R, Aime MC, Robbertse B, Miller AN, Aoki T, Ariyawansa HA, Cardinali G, Crous PW, Druzhinina IS, Geiser DM, Hawksworth DL, Hyde KD, Irinyi L, Jeewon R, Johnston PR, Kirk PM, Malosso E, May TW, Meyer W, Nilsson HR, Öpik M, Robert V, Stadler M, Thines M, Vu D, Yurkov AM, Zhang N, Schoch CL. Author Correction: Fungal taxonomy and sequence-based nomenclature. Nat Microbiol. 2021 Jul;6(7):971. doi: 10.1038/s41564-021-00921-z. PMID: 34045712.
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