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Assessment of coyote–wolf–dog admixture using ancestry‐informative diagnostic SNP s

Alliances for Graduate Education and the Professoriate AND Program Evaluation

Dykhuizen DE, Kays R, Monzón J.
GSID: zay-BLXixOUJ
J Monzón, R Kays, DE Dykhuizen - Molecular ecology, 2014 - Wiley Online Library

The evolutionary importance of hybridization as a source of new adaptive genetic variation is rapidly gaining recognition. Hybridization between coyotes and wolves may have introduced adaptive alleles into the coyote gene pool that facilitated an expansion in their geographic...

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Monzón, J., Kays, R., & Dykhuizen, D. E. (2014). Assessment of coyote–wolf–dog admixture using ancestry‐informative diagnostic SNP s. Molecular ecology, 23(1), 182-197.
Monzón, Javier, Roland Kays, and D. E. Dykhuizen. "Assessment of coyote–wolf–dog admixture using ancestry‐informative diagnostic SNP s." Molecular ecology 23.1 (2014): 182-197.
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Santa Rosalia revisited: why are there so many species of bacteria?

diversity

Dykhuizen DE.
GSID: KXQ1luty6uAJ
DE Dykhuizen - Antonie van Leeuwenhoek, 1998 - Springer

The diversity of bacteria in the world is very poorly known. Usually less than one percent of the bacteria from natural communities can be grown in the laboratory. This has caused us to …

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Dykhuizen, D. E. (1998). Santa Rosalia revisited: why are there so many species of bacteria?. Antonie van Leeuwenhoek, 73(1), 25-33.
Dykhuizen, Daniel E. "Santa Rosalia revisited: why are there so many species of bacteria?." Antonie van Leeuwenhoek 73.1 (1998): 25-33.
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Post operative fungal endopthalmitis due to Geotrichum candidum.

Medical mycology case reports

Myint T, Dykhuizen MJ, McDonald CH, Ribes JA.
PMID: 26779419
Med Mycol Case Rep. 2015 Dec 01;10:4-6. doi: 10.1016/j.mmcr.2015.11.001. eCollection 2015 Dec.

Geotrichum species have been rarely reported as the cause of sepsis, disseminated infection in immunosuppressed patients. The patient we describe developed indolent endophthalmitis four months after her routine right eye cataract surgery. The intraoperative sample from right vitreous fluid...

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Myint T, Dykhuizen MJ, McDonald CH, et al. Post operative fungal endopthalmitis due to Geotrichum candidum. Med Mycol Case Rep. 2015;10:4-6doi: 10.1016/j.mmcr.2015.11.001.
Myint, T., Dykhuizen, M. J., McDonald, C. H., & Ribes, J. A. (2015). Post operative fungal endopthalmitis due to Geotrichum candidum. Medical mycology case reports, 104-6. https://doi.org/10.1016/j.mmcr.2015.11.001
Myint, Thein, et al. "Post operative fungal endopthalmitis due to Geotrichum candidum." Medical mycology case reports vol. 10 (2015): 4-6. doi: https://doi.org/10.1016/j.mmcr.2015.11.001
Myint T, Dykhuizen MJ, McDonald CH, Ribes JA. Post operative fungal endopthalmitis due to Geotrichum candidum. Med Mycol Case Rep. 2015 Dec 01;10:4-6. doi: 10.1016/j.mmcr.2015.11.001. eCollection 2015 Dec. PMID: 26779419; PMCID: PMC4685175.
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The molecular biology of natural selection: reply to burton and place.

Genetics

Hartl DL, Dean AM, Dykhuizen DE.
PMID: 17246353
Genetics. 1986 Nov;114(3):1037-9. doi: 10.1093/genetics/114.3.1037.

No abstract available.

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Hartl DL, Dean AM, Dykhuizen DE. The molecular biology of natural selection: reply to burton and place. Genetics. 1986;114(3):1037-9doi: 10.1093/genetics/114.3.1037.
Hartl, D. L., Dean, A. M., & Dykhuizen, D. E. (1986). The molecular biology of natural selection: reply to burton and place. Genetics, 114(3), 1037-9. https://doi.org/10.1093/genetics/114.3.1037
Hartl, D L, et al. "The molecular biology of natural selection: reply to burton and place." Genetics vol. 114,3 (1986): 1037-9. doi: https://doi.org/10.1093/genetics/114.3.1037
Hartl DL, Dean AM, Dykhuizen DE. The molecular biology of natural selection: reply to burton and place. Genetics. 1986 Nov;114(3):1037-9. doi: 10.1093/genetics/114.3.1037. PMID: 17246353; PMCID: PMC1203006.
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[No title available]

Cancers

Kurz L, Miklyaeva A, Skowron MA, Overbeck N, Poschmann G, Becker T, Eul K, Kurz T, Schönberger S, Calaminus G, Stühler K, Dykhuizen E, Albers P, Nettersheim D.
PMID: 32272809
Cancers (Basel). 2020 Apr 07;12(4). doi: 10.3390/cancers12040905.

Germ cell tumors (GCTs) are the most common solid malignancies found in young men. Although they generally have high cure rates, metastases, resistance to cisplatin-based therapy, and late toxicities still represent a lethal threat, arguing for the need of...

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Kurz L, Miklyaeva A, Skowron MA, et al. . Cancers (Basel). 2020;12(4)doi: 10.3390/cancers12040905.
Kurz, L., Miklyaeva, A., Skowron, M. A., Overbeck, N., Poschmann, G., Becker, T., Eul, K., Kurz, T., Schönberger, S., Calaminus, G., Stühler, K., Dykhuizen, E., Albers, P., & Nettersheim, D. (2020). . Cancers, 12(4), . https://doi.org/10.3390/cancers12040905
Kurz, Lukas, et al. "." Cancers vol. 12,4 (2020). doi: https://doi.org/10.3390/cancers12040905
Kurz L, Miklyaeva A, Skowron MA, Overbeck N, Poschmann G, Becker T, Eul K, Kurz T, Schönberger S, Calaminus G, Stühler K, Dykhuizen E, Albers P, Nettersheim D. . Cancers (Basel). 2020 Apr 07;12(4). doi: 10.3390/cancers12040905. PMID: 32272809; PMCID: PMC7226530.
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Polycomb group proteins in cancer: multifaceted functions and strategies for modulation.

NAR cancer

Wang S, C Ordonez-Rubiano S, Dhiman A, Jiao G, Strohmier BP, Krusemark CJ, Dykhuizen EC.
PMID: 34617019
NAR Cancer. 2021 Oct 04;3(4):zcab039. doi: 10.1093/narcan/zcab039. eCollection 2021 Dec.

Polycomb repressive complexes (PRCs) are a heterogenous collection of dozens, if not hundreds, of protein complexes composed of various combinations of subunits. PRCs are transcriptional repressors important for cell-type specificity during development, and as such, are commonly mis-regulated in...

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Wang S, C Ordonez-Rubiano S, Dhiman A, et al. Polycomb group proteins in cancer: multifaceted functions and strategies for modulation. NAR Cancer. 2021;3(4):zcab039doi: 10.1093/narcan/zcab039.
Wang, S., C Ordonez-Rubiano, S., Dhiman, A., Jiao, G., Strohmier, B. P., Krusemark, C. J., & Dykhuizen, E. C. (2021). Polycomb group proteins in cancer: multifaceted functions and strategies for modulation. NAR cancer, 3(4), zcab039. https://doi.org/10.1093/narcan/zcab039
Wang, Sijie, et al. "Polycomb group proteins in cancer: multifaceted functions and strategies for modulation." NAR cancer vol. 3,4 (2021): zcab039. doi: https://doi.org/10.1093/narcan/zcab039
Wang S, C Ordonez-Rubiano S, Dhiman A, Jiao G, Strohmier BP, Krusemark CJ, Dykhuizen EC. Polycomb group proteins in cancer: multifaceted functions and strategies for modulation. NAR Cancer. 2021 Oct 04;3(4):zcab039. doi: 10.1093/narcan/zcab039. eCollection 2021 Dec. PMID: 34617019; PMCID: PMC8489530.
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PBRM1 Regulates Stress Response in Epithelial Cells.

iScience

Porter EG, Dhiman A, Chowdhury B, Carter BC, Lin H, Stewart JC, Kazemian M, Wendt MK, Dykhuizen EC.
PMID: 31077944
iScience. 2019 May 31;15:196-210. doi: 10.1016/j.isci.2019.04.027. Epub 2019 Apr 26.

Polybromo1 (PBRM1) is a chromatin remodeler subunit highly mutated in cancer, particularly clear cell renal carcinoma. PBRM1 is a member of the SWI/SNF subcomplex, PBAF (PBRM1-Brg1/Brm-associated factors), and is characterized by six tandem bromodomains. Here we establish a role...

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Porter EG, Dhiman A, Chowdhury B, et al. PBRM1 Regulates Stress Response in Epithelial Cells. iScience. 2019;15:196-210doi: 10.1016/j.isci.2019.04.027.
Porter, E. G., Dhiman, A., Chowdhury, B., Carter, B. C., Lin, H., Stewart, J. C., Kazemian, M., Wendt, M. K., & Dykhuizen, E. C. (2019). PBRM1 Regulates Stress Response in Epithelial Cells. iScience, 15196-210. https://doi.org/10.1016/j.isci.2019.04.027
Porter, Elizabeth G, et al. "PBRM1 Regulates Stress Response in Epithelial Cells." iScience vol. 15 (2019): 196-210. doi: https://doi.org/10.1016/j.isci.2019.04.027
Porter EG, Dhiman A, Chowdhury B, Carter BC, Lin H, Stewart JC, Kazemian M, Wendt MK, Dykhuizen EC. PBRM1 Regulates Stress Response in Epithelial Cells. iScience. 2019 May 31;15:196-210. doi: 10.1016/j.isci.2019.04.027. Epub 2019 Apr 26. PMID: 31077944; PMCID: PMC6514269.
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SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA.

Ecology

Feldgarden M, Stoebel DM, Brisson D, Dykhuizen DE.
PMID: 21423836
Ecology. 2003 Jul;84(7):1679-1687. doi: 10.1890/0012-9658(2003)084[1679:SDMMSE]2.0.CO;2.

Experimental evolution is relevant to ecology because it can connect physiology, and in particular metabolism, to questions in ecology. The investigation of the linkage between the environment and the evolution of metabolism is tractable because these experiments manipulate a...

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Feldgarden M, Stoebel DM, Brisson D, et al. SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA. Ecology. 2003;84(7):1679-1687doi: 10.1890/0012-9658(2003)084[1679:SDMMSE]2.0.CO;2.
Feldgarden, M., Stoebel, D. M., Brisson, D., & Dykhuizen, D. E. (2003). SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA. Ecology, 84(7), 1679-1687. https://doi.org/10.1890/0012-9658(2003)084[1679:SDMMSE]2.0.CO;2
Feldgarden, Michael, et al. "SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA." Ecology vol. 84,7 (2003): 1679-1687. doi: https://doi.org/10.1890/0012-9658(2003)084[1679:SDMMSE]2.0.CO;2
Feldgarden M, Stoebel DM, Brisson D, Dykhuizen DE. SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA. Ecology. 2003 Jul;84(7):1679-1687. doi: 10.1890/0012-9658(2003)084[1679:SDMMSE]2.0.CO;2. PMID: 21423836; PMCID: PMC3058633.
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Enzyme activity and fitness: Evolution in solution.

Trends in ecology & evolution

Dykhuizen DE, Dean AM.
PMID: 21232368
Trends Ecol Evol. 1990 Aug;5(8):257-62. doi: 10.1016/0169-5347(90)90067-N.

Natural selection should be studied as an end in itself, and this requires rigorous experimental tests of theoretical models linking molecular phenotypes to differences in fitness. We describe the experimental verification of one such model and thereby demonstrate that...

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Dykhuizen DE, Dean AM. Enzyme activity and fitness: Evolution in solution. Trends Ecol Evol. 1990;5(8):257-62doi: 10.1016/0169-5347(90)90067-N.
Dykhuizen, D. E., & Dean, A. M. (1990). Enzyme activity and fitness: Evolution in solution. Trends in ecology & evolution, 5(8), 257-62. https://doi.org/10.1016/0169-5347(90)90067-N
Dykhuizen, D E, and Dean, A M. "Enzyme activity and fitness: Evolution in solution." Trends in ecology & evolution vol. 5,8 (1990): 257-62. doi: https://doi.org/10.1016/0169-5347(90)90067-N
Dykhuizen DE, Dean AM. Enzyme activity and fitness: Evolution in solution. Trends Ecol Evol. 1990 Aug;5(8):257-62. doi: 10.1016/0169-5347(90)90067-N. PMID: 21232368.
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MicroRNA-directed pathway discovery elucidates an miR-221/222-mediated regulatory circuit in class switch recombination.

The Journal of experimental medicine

Wigton EJ, Mikami Y, McMonigle RJ, Castellanos CA, Wade-Vallance AK, Zhou SK, Kageyama R, Litterman A, Roy S, Kitamura D, Dykhuizen EC, Allen CDC, Hu H, O'Shea JJ, Ansel KM.
PMID: 34586363
J Exp Med. 2021 Nov 01;218(11). doi: 10.1084/jem.20201422. Epub 2021 Sep 29.

MicroRNAs (miRNAs, miRs) regulate cell fate decisions by post-transcriptionally tuning networks of mRNA targets. We used miRNA-directed pathway discovery to reveal a regulatory circuit that influences Ig class switch recombination (CSR). We developed a system to deplete mature, activated...

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Wigton EJ, Mikami Y, McMonigle RJ, et al. MicroRNA-directed pathway discovery elucidates an miR-221/222-mediated regulatory circuit in class switch recombination. J Exp Med. 2021;218(11)doi: 10.1084/jem.20201422.
Wigton, E. J., Mikami, Y., McMonigle, R. J., Castellanos, C. A., Wade-Vallance, A. K., Zhou, S. K., Kageyama, R., Litterman, A., Roy, S., Kitamura, D., Dykhuizen, E. C., Allen, C. D. C., Hu, H., O'Shea, J. J., & Ansel, K. M. (2021). MicroRNA-directed pathway discovery elucidates an miR-221/222-mediated regulatory circuit in class switch recombination. The Journal of experimental medicine, 218(11), . https://doi.org/10.1084/jem.20201422
Wigton, Eric J, et al. "MicroRNA-directed pathway discovery elucidates an miR-221/222-mediated regulatory circuit in class switch recombination." The Journal of experimental medicine vol. 218,11 (2021). doi: https://doi.org/10.1084/jem.20201422
Wigton EJ, Mikami Y, McMonigle RJ, Castellanos CA, Wade-Vallance AK, Zhou SK, Kageyama R, Litterman A, Roy S, Kitamura D, Dykhuizen EC, Allen CDC, Hu H, O'Shea JJ, Ansel KM. MicroRNA-directed pathway discovery elucidates an miR-221/222-mediated regulatory circuit in class switch recombination. J Exp Med. 2021 Nov 01;218(11). doi: 10.1084/jem.20201422. Epub 2021 Sep 29. PMID: 34586363; PMCID: PMC8485858.
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Polycomb Paralog Chromodomain Inhibitors Active against Both CBX6 and CBX8*.

ChemMedChem

Milosevich N, Wilson CR, Brown TM, Alpsoy A, Wang S, Connelly KE, Sinclair KAD, Ponio FR, Hof R, Dykhuizen EC, Hof F.
PMID: 34174168
ChemMedChem. 2021 Oct 06;16(19):3027-3034. doi: 10.1002/cmdc.202100262. Epub 2021 Jul 23.

Methyllysine reader proteins bind to methylated lysine residues and alter gene transcription by changing either the compaction state of chromatin or by the recruitment of other multiprotein complexes. The polycomb paralog family of methyllysine readers bind to trimethylated lysine...

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Milosevich N, Wilson CR, Brown TM, et al. Polycomb Paralog Chromodomain Inhibitors Active against Both CBX6 and CBX8*. ChemMedChem. 2021;16(19):3027-3034doi: 10.1002/cmdc.202100262.
Milosevich, N., Wilson, C. R., Brown, T. M., Alpsoy, A., Wang, S., Connelly, K. E., Sinclair, K. A. D., Ponio, F. R., Hof, R., Dykhuizen, E. C., & Hof, F. (2021). Polycomb Paralog Chromodomain Inhibitors Active against Both CBX6 and CBX8*. ChemMedChem, 16(19), 3027-3034. https://doi.org/10.1002/cmdc.202100262
Milosevich, Natalia, et al. "Polycomb Paralog Chromodomain Inhibitors Active against Both CBX6 and CBX8*." ChemMedChem vol. 16,19 (2021): 3027-3034. doi: https://doi.org/10.1002/cmdc.202100262
Milosevich N, Wilson CR, Brown TM, Alpsoy A, Wang S, Connelly KE, Sinclair KAD, Ponio FR, Hof R, Dykhuizen EC, Hof F. Polycomb Paralog Chromodomain Inhibitors Active against Both CBX6 and CBX8*. ChemMedChem. 2021 Oct 06;16(19):3027-3034. doi: 10.1002/cmdc.202100262. Epub 2021 Jul 23. PMID: 34174168; PMCID: PMC8497432.
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Response from sokurenko and dykhuizen .

Trends in microbiology

Sokurenko EV, Dykhuizen DE.
PMID: 10390636
Trends Microbiol. 1999 Jul;7(7):272. doi: 10.1016/s0966-842x(99)01529-2.

No abstract available.

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Sokurenko EV, Dykhuizen DE. Response from sokurenko and dykhuizen . Trends Microbiol. 1999;7(7):272doi: 10.1016/s0966-842x(99)01529-2.
Sokurenko, E. V., & Dykhuizen, D. E. (1999). Response from sokurenko and dykhuizen . Trends in microbiology, 7(7), 272. https://doi.org/10.1016/s0966-842x(99)01529-2
Sokurenko, and Dykhuizen. "Response from sokurenko and dykhuizen ." Trends in microbiology vol. 7,7 (1999): 272. doi: https://doi.org/10.1016/s0966-842x(99)01529-2
Sokurenko EV, Dykhuizen DE. Response from sokurenko and dykhuizen . Trends Microbiol. 1999 Jul;7(7):272. doi: 10.1016/s0966-842x(99)01529-2. PMID: 10390636.
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Showing 1 to 12 of 24 entries