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Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos.

Genome announcements

Nelson RL, Castro MA, Katti M, Eisen JA, Van Laar TA.
PMID: 27540060
Genome Announc. 2016 Aug 18;4(4). doi: 10.1128/genomeA.00807-16.

Avian species have the potential to serve as important reservoirs for the spread of pathogenic microorganisms. Here, we report the genome sequence of a drug-resistant strain of Bacillus pumilus, CB01, isolated from the feces of an American crow, Corvus...

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Nelson RL, Castro MA, Katti M, et al. Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos. Genome Announc. 2016;4(4)doi: 10.1128/genomeA.00807-16.
Nelson, R. L., Castro, M. A., Katti, M., Eisen, J. A., & Van Laar, T. A. (2016). Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos. Genome announcements, 4(4), . https://doi.org/10.1128/genomeA.00807-16
Nelson, R Lee, et al. "Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos." Genome announcements vol. 4,4 (2016). doi: https://doi.org/10.1128/genomeA.00807-16
Nelson RL, Castro MA, Katti M, Eisen JA, Van Laar TA. Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus, CB01, Isolated from the Feces of an American Crow, Corvus brachyrhynchos. Genome Announc. 2016 Aug 18;4(4). doi: 10.1128/genomeA.00807-16. PMID: 27540060; PMCID: PMC4991705.
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Draft Genome Sequences of .

Genome announcements

Klein BA, Lemon KP, Gajare P, Jospin G, Eisen JA, Coil DA.
PMID: 28232444
Genome Announc. 2017 Feb 23;5(8). doi: 10.1128/genomeA.01652-16.

We present here the draft genome sequences of

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Klein BA, Lemon KP, Gajare P, et al. Draft Genome Sequences of . Genome Announc. 2017;5(8)doi: 10.1128/genomeA.01652-16.
Klein, B. A., Lemon, K. P., Gajare, P., Jospin, G., Eisen, J. A., & Coil, D. A. (2017). Draft Genome Sequences of . Genome announcements, 5(8), . https://doi.org/10.1128/genomeA.01652-16
Klein, Brian A, et al. "Draft Genome Sequences of ." Genome announcements vol. 5,8 (2017). doi: https://doi.org/10.1128/genomeA.01652-16
Klein BA, Lemon KP, Gajare P, Jospin G, Eisen JA, Coil DA. Draft Genome Sequences of . Genome Announc. 2017 Feb 23;5(8). doi: 10.1128/genomeA.01652-16. PMID: 28232444; PMCID: PMC5323623.
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Systemic targeted therapy for her2-positive early female breast cancer: a systematic review of the evidence for the 2014 Cancer Care Ontario systemic therapy guideline.

Current oncology (Toronto, Ont.)

Mates M, Fletcher GG, Freedman OC, Eisen A, Gandhi S, Trudeau ME, Dent SF.
PMID: 25848335
Curr Oncol. 2015 Mar;22:S114-22. doi: 10.3747/co.22.2322.

BACKGROUND: This systematic review addresses the question "What is the optimal targeted therapy for female patients with early-stage human epidermal growth factor receptor 2 (her2)-positive breast cancer?"METHODS: The medline and embase databases were searched for the period January 2008...

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Mates M, Fletcher GG, Freedman OC, et al. Systemic targeted therapy for her2-positive early female breast cancer: a systematic review of the evidence for the 2014 Cancer Care Ontario systemic therapy guideline. Curr Oncol. 2015;22:S114-22doi: 10.3747/co.22.2322.
Mates, M., Fletcher, G. G., Freedman, O. C., Eisen, A., Gandhi, S., Trudeau, M. E., & Dent, S. F. (2015). Systemic targeted therapy for her2-positive early female breast cancer: a systematic review of the evidence for the 2014 Cancer Care Ontario systemic therapy guideline. Current oncology (Toronto, Ont.), 22S114-22. https://doi.org/10.3747/co.22.2322
Mates, M, et al. "Systemic targeted therapy for her2-positive early female breast cancer: a systematic review of the evidence for the 2014 Cancer Care Ontario systemic therapy guideline." Current oncology (Toronto, Ont.) vol. 22 (2015): S114-22. doi: https://doi.org/10.3747/co.22.2322
Mates M, Fletcher GG, Freedman OC, Eisen A, Gandhi S, Trudeau ME, Dent SF. Systemic targeted therapy for her2-positive early female breast cancer: a systematic review of the evidence for the 2014 Cancer Care Ontario systemic therapy guideline. Curr Oncol. 2015 Mar;22:S114-22. doi: 10.3747/co.22.2322. PMID: 25848335; PMCID: PMC4381787.
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CORRELATED RESPONSE IN THE DEVELOPMENTAL CHOREOGRAPHIES OF THE MOUSE MANDIBLE TO SELECTION FOR BODY COMPOSITION.

Evolution; international journal of organic evolution

Atchley WR, Cowley DE, Eisen EJ, Prasetyo H, Hawkins-Brown D.
PMID: 28567984
Evolution. 1990 May;44(3):669-688. doi: 10.1111/j.1558-5646.1990.tb05947.x.

The correlated response to 13 generations of selection for percent fatness and leanness is investigated in 11 mandible traits in mice. Five selection lines are examined including high fat (HF), low fat (LF), high lean (HL), low lean (LL)...

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Atchley WR, Cowley DE, Eisen EJ, et al. CORRELATED RESPONSE IN THE DEVELOPMENTAL CHOREOGRAPHIES OF THE MOUSE MANDIBLE TO SELECTION FOR BODY COMPOSITION. Evolution. 1990;44(3):669-688doi: 10.1111/j.1558-5646.1990.tb05947.x.
Atchley, W. R., Cowley, D. E., Eisen, E. J., Prasetyo, H., & Hawkins-Brown, D. (1990). CORRELATED RESPONSE IN THE DEVELOPMENTAL CHOREOGRAPHIES OF THE MOUSE MANDIBLE TO SELECTION FOR BODY COMPOSITION. Evolution; international journal of organic evolution, 44(3), 669-688. https://doi.org/10.1111/j.1558-5646.1990.tb05947.x
Atchley, William R, et al. "CORRELATED RESPONSE IN THE DEVELOPMENTAL CHOREOGRAPHIES OF THE MOUSE MANDIBLE TO SELECTION FOR BODY COMPOSITION." Evolution; international journal of organic evolution vol. 44,3 (1990): 669-688. doi: https://doi.org/10.1111/j.1558-5646.1990.tb05947.x
Atchley WR, Cowley DE, Eisen EJ, Prasetyo H, Hawkins-Brown D. CORRELATED RESPONSE IN THE DEVELOPMENTAL CHOREOGRAPHIES OF THE MOUSE MANDIBLE TO SELECTION FOR BODY COMPOSITION. Evolution. 1990 May;44(3):669-688. doi: 10.1111/j.1558-5646.1990.tb05947.x. PMID: 28567984.
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Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis.

Genome announcements

Alexiev A, Coil DA, Jospin G, Eisen JA, Adams JY.
PMID: 27151785
Genome Announc. 2016 May 05;4(3). doi: 10.1128/genomeA.00234-16.

Here, we present the 6,155,188-bp draft genome sequence of Klebsiella pneumoniae UCD-JA29, isolated from blood cultures from a patient with sepsis at the University of California, Davis Medical Center in Sacramento, California, USA.

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Alexiev A, Coil DA, Jospin G, et al. Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis. Genome Announc. 2016;4(3)doi: 10.1128/genomeA.00234-16.
Alexiev, A., Coil, D. A., Jospin, G., Eisen, J. A., & Adams, J. Y. (2016). Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis. Genome announcements, 4(3), . https://doi.org/10.1128/genomeA.00234-16
Alexiev, Alexandra, et al. "Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis." Genome announcements vol. 4,3 (2016). doi: https://doi.org/10.1128/genomeA.00234-16
Alexiev A, Coil DA, Jospin G, Eisen JA, Adams JY. Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis. Genome Announc. 2016 May 05;4(3). doi: 10.1128/genomeA.00234-16. PMID: 27151785; PMCID: PMC4859167.
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The residency interview is still paramount: results of a retrospective cohort study on concordance of dermatology residency applicant evaluators and influence of the applicant interview.

Dermatology online journal

Kamangar F, Davari P, Azari R, Fitzmaurice S, Li CS, Eisen DB, Fazel N.
PMID: 28537874
Dermatol Online J. 2017 May 22;23(5).

Application to dermatology residency is a highly competitive process. Although factors associated with successfully matching have been studied, less is known regarding the ability of admissions committees to screen applicants in a uniform manner or the importance of the...

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Kamangar F, Davari P, Azari R, et al. The residency interview is still paramount: results of a retrospective cohort study on concordance of dermatology residency applicant evaluators and influence of the applicant interview. Dermatol Online J. 2017;23(5)
Kamangar, F., Davari, P., Azari, R., Fitzmaurice, S., Li, C. S., Eisen, D. B., & Fazel, N. (2017). The residency interview is still paramount: results of a retrospective cohort study on concordance of dermatology residency applicant evaluators and influence of the applicant interview. Dermatology online journal, 23(5), .
Kamangar, Faranak, et al. "The residency interview is still paramount: results of a retrospective cohort study on concordance of dermatology residency applicant evaluators and influence of the applicant interview." Dermatology online journal vol. 23,5 (2017).
Kamangar F, Davari P, Azari R, Fitzmaurice S, Li CS, Eisen DB, Fazel N. The residency interview is still paramount: results of a retrospective cohort study on concordance of dermatology residency applicant evaluators and influence of the applicant interview. Dermatol Online J. 2017 May 22;23(5). PMID: 28537874.
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Genotype by environment interactions and genetic correlations involving two environmental factors.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Eisen EJ, Saxton AM.
PMID: 24258484
Theor Appl Genet. 1983 Nov;67(1):75-86. doi: 10.1007/BF00303929.

The concept of the genetic correlation for one trait across environments was extended to two environmental factors B and C. Three additive genetic correlations for the same trait were defined: rG, across both environmental factors; rG(B), across C and...

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Eisen EJ, Saxton AM. Genotype by environment interactions and genetic correlations involving two environmental factors. Theor Appl Genet. 1983;67(1):75-86doi: 10.1007/BF00303929.
Eisen, E. J., & Saxton, A. M. (1983). Genotype by environment interactions and genetic correlations involving two environmental factors. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 67(1), 75-86. https://doi.org/10.1007/BF00303929
Eisen, E J, and Saxton, A M. "Genotype by environment interactions and genetic correlations involving two environmental factors." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 67,1 (1983): 75-86. doi: https://doi.org/10.1007/BF00303929
Eisen EJ, Saxton AM. Genotype by environment interactions and genetic correlations involving two environmental factors. Theor Appl Genet. 1983 Nov;67(1):75-86. doi: 10.1007/BF00303929. PMID: 24258484.
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Forensic analysis of the microbiome of phones and shoes.

Microbiome

Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA.
PMID: 25969737
Microbiome. 2015 May 12;3:21. doi: 10.1186/s40168-015-0082-9. eCollection 2015.

BACKGROUND: Microbial interaction between human-associated objects and the environments we inhabit may have forensic implications, and the extent to which microbes are shared between individuals inhabiting the same space may be relevant to human health and disease transmission. In...

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Lax S, Hampton-Marcell JT, Gibbons SM, et al. Forensic analysis of the microbiome of phones and shoes. Microbiome. 2015;3:21doi: 10.1186/s40168-015-0082-9.
Lax, S., Hampton-Marcell, J. T., Gibbons, S. M., Colares, G. B., Smith, D., Eisen, J. A., & Gilbert, J. A. (2015). Forensic analysis of the microbiome of phones and shoes. Microbiome, 321. https://doi.org/10.1186/s40168-015-0082-9
Lax, Simon, et al. "Forensic analysis of the microbiome of phones and shoes." Microbiome vol. 3 (2015): 21. doi: https://doi.org/10.1186/s40168-015-0082-9
Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. Forensic analysis of the microbiome of phones and shoes. Microbiome. 2015 May 12;3:21. doi: 10.1186/s40168-015-0082-9. eCollection 2015. PMID: 25969737; PMCID: PMC4427962.
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Correlated responses in growth and body composition of replicated single-trait and index selected lines of mice.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Eisen EJ, Bandy T.
PMID: 24407170
Theor Appl Genet. 1977 May;49(3):133-44. doi: 10.1007/BF00281711.

Correlated responses in growth, body composition and efficiency were evaluated in lines of mice selected in the following ways: W(+)T i (o) , increased six-week body weight (WT6); W ° T i (+) , increased six-week tail length (TL6);...

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Eisen EJ, Bandy T. Correlated responses in growth and body composition of replicated single-trait and index selected lines of mice. Theor Appl Genet. 1977;49(3):133-44doi: 10.1007/BF00281711.
Eisen, E. J., & Bandy, T. (1977). Correlated responses in growth and body composition of replicated single-trait and index selected lines of mice. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 49(3), 133-44. https://doi.org/10.1007/BF00281711
Eisen, E J, and Bandy, T. "Correlated responses in growth and body composition of replicated single-trait and index selected lines of mice." TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik vol. 49,3 (1977): 133-44. doi: https://doi.org/10.1007/BF00281711
Eisen EJ, Bandy T. Correlated responses in growth and body composition of replicated single-trait and index selected lines of mice. Theor Appl Genet. 1977 May;49(3):133-44. doi: 10.1007/BF00281711. PMID: 24407170.
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Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon.

Genome announcements

Tokajian S, Eisen JA, Jospin G, Matar G, Araj GF, Coil DA.
PMID: 26823584
Genome Announc. 2016 Jan 28;4(1). doi: 10.1128/genomeA.01632-15.

We present the draft genome of highly drug-resistant Klebsiella pneumoniae KGM-IMP216, isolated from a urine sample collected from a patient in Lebanon. The draft genome sequence consisted of 77 contigs, including a combined 5,731,500 bases with 57% G+C content.

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Tokajian S, Eisen JA, Jospin G, et al. Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon. Genome Announc. 2016;4(1)doi: 10.1128/genomeA.01632-15.
Tokajian, S., Eisen, J. A., Jospin, G., Matar, G., Araj, G. F., & Coil, D. A. (2016). Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon. Genome announcements, 4(1), . https://doi.org/10.1128/genomeA.01632-15
Tokajian, Sima, et al. "Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon." Genome announcements vol. 4,1 (2016). doi: https://doi.org/10.1128/genomeA.01632-15
Tokajian S, Eisen JA, Jospin G, Matar G, Araj GF, Coil DA. Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon. Genome Announc. 2016 Jan 28;4(1). doi: 10.1128/genomeA.01632-15. PMID: 26823584; PMCID: PMC4732337.
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains.

Standards in genomic sciences

Whitman WB, Woyke T, Klenk HP, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC.
PMID: 26203337
Stand Genomic Sci. 2015 May 17;10:26. doi: 10.1186/s40793-015-0017-x. eCollection 2015.

The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project was launched by the JGI in 2007 as a pilot project to sequence about 250 bacterial and archaeal genomes of elevated phylogenetic diversity. Herein, we propose to extend this approach...

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Whitman WB, Woyke T, Klenk HP, et al. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Stand Genomic Sci. 2015;10:26doi: 10.1186/s40793-015-0017-x.
Whitman, W. B., Woyke, T., Klenk, H. P., Zhou, Y., Lilburn, T. G., Beck, B. J., De Vos, P., Vandamme, P., Eisen, J. A., Garrity, G., Hugenholtz, P., & Kyrpides, N. C. (2015). Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in genomic sciences, 1026. https://doi.org/10.1186/s40793-015-0017-x
Whitman, William B, et al. "Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains." Standards in genomic sciences vol. 10 (2015): 26. doi: https://doi.org/10.1186/s40793-015-0017-x
Whitman WB, Woyke T, Klenk HP, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Stand Genomic Sci. 2015 May 17;10:26. doi: 10.1186/s40793-015-0017-x. eCollection 2015. PMID: 26203337; PMCID: PMC4511459.
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Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon.

Genome announcements

Tokajian S, Eisen JA, Jospin G, Coil DA.
PMID: 24831139
Genome Announc. 2014 May 15;2(3). doi: 10.1128/genomeA.00358-14.

We present the draft genome sequences of nine clinical Streptococcus pyogenes isolates recovered from patients suffering from sore throat and skin infections. An average of 2,454,334 paired-end reads per sample were generated, which assembled into 21 to 198 contigs,...

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Tokajian S, Eisen JA, Jospin G, et al. Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon. Genome Announc. 2014;2(3)doi: 10.1128/genomeA.00358-14.
Tokajian, S., Eisen, J. A., Jospin, G., & Coil, D. A. (2014). Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon. Genome announcements, 2(3), . https://doi.org/10.1128/genomeA.00358-14
Tokajian, Sima, et al. "Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon." Genome announcements vol. 2,3 (2014). doi: https://doi.org/10.1128/genomeA.00358-14
Tokajian S, Eisen JA, Jospin G, Coil DA. Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon. Genome Announc. 2014 May 15;2(3). doi: 10.1128/genomeA.00358-14. PMID: 24831139; PMCID: PMC4022803.
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Showing 1 to 12 of 472 entries