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Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells.

PloS one

Acanda de la Rocha AM, López-Bertoni H, Guruceaga E, González-Huarriz M, Martínez-Vélez N, Xipell E, Fueyo J, Gomez-Manzano C, Alonso MM.
PMID: 27669421
PLoS One. 2016 Sep 26;11(9):e0163155. doi: 10.1371/journal.pone.0163155. eCollection 2016.

INTRODUCTION: Glioblastoma is the most malignant brain tumor in adults and is associated with poor survival despite multimodal treatments. Glioma stem-like cells (GSCs) are cells functionally defined by their self-renewal potential and the ability to reconstitute the original tumor...

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Acanda de la Rocha AM, López-Bertoni H, Guruceaga E, et al. Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells. PLoS One. 2016;11(9):e0163155doi: 10.1371/journal.pone.0163155.
Acanda de la Rocha, A. M., López-Bertoni, H., Guruceaga, E., González-Huarriz, M., Martínez-Vélez, N., Xipell, E., Fueyo, J., Gomez-Manzano, C., & Alonso, M. M. (2016). Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells. PloS one, 11(9), e0163155. https://doi.org/10.1371/journal.pone.0163155
Acanda de la Rocha, Arlet M, et al. "Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells." PloS one vol. 11,9 (2016): e0163155. doi: https://doi.org/10.1371/journal.pone.0163155
Acanda de la Rocha AM, López-Bertoni H, Guruceaga E, González-Huarriz M, Martínez-Vélez N, Xipell E, Fueyo J, Gomez-Manzano C, Alonso MM. Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells. PLoS One. 2016 Sep 26;11(9):e0163155. doi: 10.1371/journal.pone.0163155. eCollection 2016. PMID: 27669421; PMCID: PMC5036841.
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On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs.

Proceedings of SPIE--the International Society for Optical Engineering

Lawson PR, Poyneer L, Barrett H, Frazin R, Caucci L, Devaney N, Furenlid L, Gładysz S, Guyon O, Krist J, Maire J, Marois C, Mawet D, Mouillet D, Mugnier L, Pearson I, Perrin M, Pueyo L, Savransky D.
PMID: 26347393
Proc SPIE Int Soc Opt Eng. 2012 Jul 01;8447. doi: 10.1117/12.925099.

The direct imaging of planets around nearby stars is exceedingly difficult. Only about 14 exoplanets have been imaged to date that have masses less than 13 times that of Jupiter. The next generation of planet-finding coronagraphs, including VLT-SPHERE, the...

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Lawson PR, Poyneer L, Barrett H, et al. On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs. Proc SPIE Int Soc Opt Eng. 2012;8447doi: 10.1117/12.925099.
Lawson, P. R., Poyneer, L., Barrett, H., Frazin, R., Caucci, L., Devaney, N., Furenlid, L., Gładysz, S., Guyon, O., Krist, J., Maire, J., Marois, C., Mawet, D., Mouillet, D., Mugnier, L., Pearson, I., Perrin, M., Pueyo, L., & Savransky, D. (2012). On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs. Proceedings of SPIE--the International Society for Optical Engineering, 8447. https://doi.org/10.1117/12.925099
Lawson, Peter R, et al. "On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs." Proceedings of SPIE--the International Society for Optical Engineering vol. 8447 (2012). doi: https://doi.org/10.1117/12.925099
Lawson PR, Poyneer L, Barrett H, Frazin R, Caucci L, Devaney N, Furenlid L, Gładysz S, Guyon O, Krist J, Maire J, Marois C, Mawet D, Mouillet D, Mugnier L, Pearson I, Perrin M, Pueyo L, Savransky D. On Advanced Estimation Techniques for Exoplanet Detection and Characterization Using Ground-based Coronagraphs. Proc SPIE Int Soc Opt Eng. 2012 Jul 01;8447. doi: 10.1117/12.925099. PMID: 26347393; PMCID: PMC4558925.
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xCELLigence system for real-time label-free monitoring of growth and viability of cell lines from hematological malignancies.

OncoTargets and therapy

Martinez-Serra J, Gutierrez A, Muñoz-Capó S, Navarro-Palou M, Ros T, Amat JC, Lopez B, Marcus TF, Fueyo L, Suquia AG, Gines J, Rubio F, Ramos R, Besalduch J.
PMID: 24959085
Onco Targets Ther. 2014 Jun 12;7:985-94. doi: 10.2147/OTT.S62887. eCollection 2014.

The xCELLigence system is a new technological approach that allows the real-time cell analysis of adherent tumor cells. To date, xCELLigence has not been able to monitor the growth or cytotoxicity of nonadherent cells derived from hematological malignancies. The...

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Martinez-Serra J, Gutierrez A, Muñoz-Capó S, et al. xCELLigence system for real-time label-free monitoring of growth and viability of cell lines from hematological malignancies. Onco Targets Ther. 2014;7:985-94doi: 10.2147/OTT.S62887.
Martinez-Serra, J., Gutierrez, A., Muñoz-Capó, S., Navarro-Palou, M., Ros, T., Amat, J. C., Lopez, B., Marcus, T. F., Fueyo, L., Suquia, A. G., Gines, J., Rubio, F., Ramos, R., & Besalduch, J. (2014). xCELLigence system for real-time label-free monitoring of growth and viability of cell lines from hematological malignancies. OncoTargets and therapy, 7985-94. https://doi.org/10.2147/OTT.S62887
Martinez-Serra, Jordi, et al. "xCELLigence system for real-time label-free monitoring of growth and viability of cell lines from hematological malignancies." OncoTargets and therapy vol. 7 (2014): 985-94. doi: https://doi.org/10.2147/OTT.S62887
Martinez-Serra J, Gutierrez A, Muñoz-Capó S, Navarro-Palou M, Ros T, Amat JC, Lopez B, Marcus TF, Fueyo L, Suquia AG, Gines J, Rubio F, Ramos R, Besalduch J. xCELLigence system for real-time label-free monitoring of growth and viability of cell lines from hematological malignancies. Onco Targets Ther. 2014 Jun 12;7:985-94. doi: 10.2147/OTT.S62887. eCollection 2014. PMID: 24959085; PMCID: PMC4061162.
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Luminescent Coordination Glass: Remarkable Morphological Strategy for Assembled Eu(III) Complexes.

Inorganic chemistry

Hirai Y, Nakanishi T, Kitagawa Y, Fushimi K, Seki T, Ito H, Fueno H, Tanaka K, Satoh T, Hasegawa Y.
PMID: 25872587
Inorg Chem. 2015 May 04;54(9):4364-70. doi: 10.1021/acs.inorgchem.5b00145. Epub 2015 Apr 15.

Syntheses of novel luminescent Eu(III) coordination glasses 1 ([Eu(hfa)3(o-dpeb)]2), 2 ([Eu(hfa)3(m-dpeb)]3), and 3 ([Eu(hfa)3(p-dpeb)]n) are reported. They are composed of Eu(III) ions, hexafluoroacetylacetonato (hfa) ligands, and unique bent-angled phosphine oxide (o-, m-, p-dpeb) ligands with ethynyl groups. Their coordination...

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Hirai Y, Nakanishi T, Kitagawa Y, et al. Luminescent Coordination Glass: Remarkable Morphological Strategy for Assembled Eu(III) Complexes. Inorg Chem. 2015;54(9):4364-70doi: 10.1021/acs.inorgchem.5b00145.
Hirai, Y., Nakanishi, T., Kitagawa, Y., Fushimi, K., Seki, T., Ito, H., Fueno, H., Tanaka, K., Satoh, T., & Hasegawa, Y. (2015). Luminescent Coordination Glass: Remarkable Morphological Strategy for Assembled Eu(III) Complexes. Inorganic chemistry, 54(9), 4364-70. https://doi.org/10.1021/acs.inorgchem.5b00145
Hirai, Yuichi, et al. "Luminescent Coordination Glass: Remarkable Morphological Strategy for Assembled Eu(III) Complexes." Inorganic chemistry vol. 54,9 (2015): 4364-70. doi: https://doi.org/10.1021/acs.inorgchem.5b00145
Hirai Y, Nakanishi T, Kitagawa Y, Fushimi K, Seki T, Ito H, Fueno H, Tanaka K, Satoh T, Hasegawa Y. Luminescent Coordination Glass: Remarkable Morphological Strategy for Assembled Eu(III) Complexes. Inorg Chem. 2015 May 04;54(9):4364-70. doi: 10.1021/acs.inorgchem.5b00145. Epub 2015 Apr 15. PMID: 25872587.
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Editorial: Protein Crops: Food and Feed for the Future.

Frontiers in plant science

De Ron AM, Sparvoli F, Pueyo JJ, Bazile D.
PMID: 28220133
Front Plant Sci. 2017 Feb 06;8:105. doi: 10.3389/fpls.2017.00105. eCollection 2017.

No abstract available.

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De Ron AM, Sparvoli F, Pueyo JJ, et al. Editorial: Protein Crops: Food and Feed for the Future. Front Plant Sci. 2017;8:105doi: 10.3389/fpls.2017.00105.
De Ron, A. M., Sparvoli, F., Pueyo, J. J., & Bazile, D. (2017). Editorial: Protein Crops: Food and Feed for the Future. Frontiers in plant science, 8105. https://doi.org/10.3389/fpls.2017.00105
De Ron, Antonio M, et al. "Editorial: Protein Crops: Food and Feed for the Future." Frontiers in plant science vol. 8 (2017): 105. doi: https://doi.org/10.3389/fpls.2017.00105
De Ron AM, Sparvoli F, Pueyo JJ, Bazile D. Editorial: Protein Crops: Food and Feed for the Future. Front Plant Sci. 2017 Feb 06;8:105. doi: 10.3389/fpls.2017.00105. eCollection 2017. PMID: 28220133; PMCID: PMC5292564.
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The molecular and supramolecular structures of the isomeric compounds 5,7-dimethoxyimidazo[1,2-c]pyrimidine and 7-methoxy-1-methylimidazo[1,2-a]pyrimidin-5(1H)-one.

Acta crystallographica. Section C, Crystal structure communications

Bueno J, Melguizo M, Quijano ML, Low JN.
PMID: 12855857
Acta Crystallogr C. 2003 Jul;59:o363-6. doi: 10.1107/s0108270103010266. Epub 2003 Jun 11.

The supramolecular structures of the isomeric compounds 5,7-dimethoxyimidazo[1,2-c]pyrimidine, C(8)H(9)N(3)O(2), (I), and 7-methoxy-1-methylimidazo[1,2-a]pyrimidin-5(1H)-one, C(8)H(9)N(3)O(2), (II), are determined by weak C-H.N and C-H.O hydrogen bonds in (I), which generate alternating linked centrosymmetric R(2)(2)(8) and R(2)(2)(10) rings that form a ribbon running...

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Bueno J, Melguizo M, Quijano ML, et al. The molecular and supramolecular structures of the isomeric compounds 5,7-dimethoxyimidazo[1,2-c]pyrimidine and 7-methoxy-1-methylimidazo[1,2-a]pyrimidin-5(1H)-one. Acta Crystallogr C. 2003;59:o363-6doi: 10.1107/s0108270103010266.
Bueno, J., Melguizo, M., Quijano, M. L., & Low, J. N. (2003). The molecular and supramolecular structures of the isomeric compounds 5,7-dimethoxyimidazo[1,2-c]pyrimidine and 7-methoxy-1-methylimidazo[1,2-a]pyrimidin-5(1H)-one. Acta crystallographica. Section C, Crystal structure communications, 59o363-6. https://doi.org/10.1107/s0108270103010266
Bueno, Jesus, et al. "The molecular and supramolecular structures of the isomeric compounds 5,7-dimethoxyimidazo[1,2-c]pyrimidine and 7-methoxy-1-methylimidazo[1,2-a]pyrimidin-5(1H)-one." Acta crystallographica. Section C, Crystal structure communications vol. 59 (2003): o363-6. doi: https://doi.org/10.1107/s0108270103010266
Bueno J, Melguizo M, Quijano ML, Low JN. The molecular and supramolecular structures of the isomeric compounds 5,7-dimethoxyimidazo[1,2-c]pyrimidine and 7-methoxy-1-methylimidazo[1,2-a]pyrimidin-5(1H)-one. Acta Crystallogr C. 2003 Jul;59:o363-6. doi: 10.1107/s0108270103010266. Epub 2003 Jun 11. PMID: 12855857.
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Apparatus for real-time acoustic imaging of Rayleigh-Benard convection.

The Review of scientific instruments

Kuehn K, Polfer J, Furno J, Finke N.
PMID: 18052477
Rev Sci Instrum. 2007 Nov;78(11):113704. doi: 10.1063/1.2804133.

We have designed and built an apparatus for real-time acoustic imaging of convective flow patterns in optically opaque fluids. This apparatus takes advantage of recent advances in two-dimensional ultrasound transducer array technology; it employs a modified version of a...

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Kuehn K, Polfer J, Furno J, et al. Apparatus for real-time acoustic imaging of Rayleigh-Benard convection. Rev Sci Instrum. 2007;78(11):113704doi: 10.1063/1.2804133.
Kuehn, K., Polfer, J., Furno, J., & Finke, N. (2007). Apparatus for real-time acoustic imaging of Rayleigh-Benard convection. The Review of scientific instruments, 78(11), 113704. https://doi.org/10.1063/1.2804133
Kuehn, Kerry, et al. "Apparatus for real-time acoustic imaging of Rayleigh-Benard convection." The Review of scientific instruments vol. 78,11 (2007): 113704. doi: https://doi.org/10.1063/1.2804133
Kuehn K, Polfer J, Furno J, Finke N. Apparatus for real-time acoustic imaging of Rayleigh-Benard convection. Rev Sci Instrum. 2007 Nov;78(11):113704. doi: 10.1063/1.2804133. PMID: 18052477.
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Improved high-contrast imaging with on-axis telescopes using a multistage vortex coronagraph.

Optics letters

Mawet D, Serabyn E, Wallace JK, Pueyo L.
PMID: 21499405
Opt Lett. 2011 Apr 15;36(8):1506-8. doi: 10.1364/OL.36.001506.

The vortex coronagraph is one of the most promising coronagraphs for high-contrast imaging because of its simplicity, small inner working angle, high throughput, and clear off-axis discovery space. However, as with most coronagraphs, centrally obscured on-axis telescopes degrade contrast....

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Mawet D, Serabyn E, Wallace JK, et al. Improved high-contrast imaging with on-axis telescopes using a multistage vortex coronagraph. Opt Lett. 2011;36(8):1506-8doi: 10.1364/OL.36.001506.
Mawet, D., Serabyn, E., Wallace, J. K., & Pueyo, L. (2011). Improved high-contrast imaging with on-axis telescopes using a multistage vortex coronagraph. Optics letters, 36(8), 1506-8. https://doi.org/10.1364/OL.36.001506
Mawet, Dimitri, et al. "Improved high-contrast imaging with on-axis telescopes using a multistage vortex coronagraph." Optics letters vol. 36,8 (2011): 1506-8. doi: https://doi.org/10.1364/OL.36.001506
Mawet D, Serabyn E, Wallace JK, Pueyo L. Improved high-contrast imaging with on-axis telescopes using a multistage vortex coronagraph. Opt Lett. 2011 Apr 15;36(8):1506-8. doi: 10.1364/OL.36.001506. PMID: 21499405.
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An Integrated Genomic and Immunoinformatic Approach to .

Immunome research

Ardito M, Fueyo J, Tassone R, Terry F, DaSilva K, Zhang S, Martin W, De Groot AS, Moss SF, Moise L.
PMID: 25152768
Immunome Res. 2011;7(2). doi: 10.4172/1745-7580.1000049.

BACKGROUND: One useful application of pattern matching algorithms is identification of major histocompatability complex (MHC) ligands and T-cell epitopes. Peptides that bind to MHC molecules and interact with T cell receptors to stimulate the immune system are critical antigens...

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Ardito M, Fueyo J, Tassone R, et al. An Integrated Genomic and Immunoinformatic Approach to . Immunome Res. 2011;7(2)doi: 10.4172/1745-7580.1000049.
Ardito, M., Fueyo, J., Tassone, R., Terry, F., DaSilva, K., Zhang, S., Martin, W., De Groot, A. S., Moss, S. F., & Moise, L. (2011). An Integrated Genomic and Immunoinformatic Approach to . Immunome research, 7(2), . https://doi.org/10.4172/1745-7580.1000049
Ardito, Matthew, et al. "An Integrated Genomic and Immunoinformatic Approach to ." Immunome research vol. 7,2 (2011). doi: https://doi.org/10.4172/1745-7580.1000049
Ardito M, Fueyo J, Tassone R, Terry F, DaSilva K, Zhang S, Martin W, De Groot AS, Moss SF, Moise L. An Integrated Genomic and Immunoinformatic Approach to . Immunome Res. 2011;7(2). doi: 10.4172/1745-7580.1000049. PMID: 25152768; PMCID: PMC4138956.
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Meat quality of lambs produced in the Mesopotamia region of Argentina finished on different diets.

Meat science

Perlo F, Bonato P, Teira G, Tisocco O, Vicentin J, Pueyo J, Mansilla A.
PMID: 22062919
Meat Sci. 2008 Jul;79(3):576-81. doi: 10.1016/j.meatsci.2007.10.005. Epub 2007 Oct 22.

The meat quality of Corriedale lambs (40kg live weight) produced in the Mesopotamia region (Argentina) was assessed. These lambs had different finishing diets: only native grass pasture, ground alfalfa and alfalfa-linseed pellet (70/30). Carcass yield, longissimus dorsi area, backfat...

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Perlo F, Bonato P, Teira G, et al. Meat quality of lambs produced in the Mesopotamia region of Argentina finished on different diets. Meat Sci. 2007;79(3):576-81doi: 10.1016/j.meatsci.2007.10.005.
Perlo, F., Bonato, P., Teira, G., Tisocco, O., Vicentin, J., Pueyo, J., & Mansilla, A. (2008). Meat quality of lambs produced in the Mesopotamia region of Argentina finished on different diets. Meat science, 79(3), 576-81. https://doi.org/10.1016/j.meatsci.2007.10.005
Perlo, F, et al. "Meat quality of lambs produced in the Mesopotamia region of Argentina finished on different diets." Meat science vol. 79,3 (2008): 576-81. doi: https://doi.org/10.1016/j.meatsci.2007.10.005
Perlo F, Bonato P, Teira G, Tisocco O, Vicentin J, Pueyo J, Mansilla A. Meat quality of lambs produced in the Mesopotamia region of Argentina finished on different diets. Meat Sci. 2008 Jul;79(3):576-81. doi: 10.1016/j.meatsci.2007.10.005. Epub 2007 Oct 22. PMID: 22062919.
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Harnessing the power of genomics and immunoinformatics to produce improved vaccines.

Expert opinion on drug discovery

Moise L, Cousens L, Fueyo J, De Groot AS.
PMID: 22646824
Expert Opin Drug Discov. 2011 Jan;6(1):9-15. doi: 10.1517/17460441.2011.534454. Epub 2010 Dec 01.

The role of cellular immunity as a mediator of protection against disease is gaining recognition, particularly with regard to the many pathogens for which we presently lack effective vaccines. As a result, there is an ever-increasing need to understand...

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Moise L, Cousens L, Fueyo J, et al. Harnessing the power of genomics and immunoinformatics to produce improved vaccines. Expert Opin Drug Discov. 2010;6(1):9-15doi: 10.1517/17460441.2011.534454.
Moise, L., Cousens, L., Fueyo, J., & De Groot, A. S. (2011). Harnessing the power of genomics and immunoinformatics to produce improved vaccines. Expert opinion on drug discovery, 6(1), 9-15. https://doi.org/10.1517/17460441.2011.534454
Moise, Leonard, et al. "Harnessing the power of genomics and immunoinformatics to produce improved vaccines." Expert opinion on drug discovery vol. 6,1 (2011): 9-15. doi: https://doi.org/10.1517/17460441.2011.534454
Moise L, Cousens L, Fueyo J, De Groot AS. Harnessing the power of genomics and immunoinformatics to produce improved vaccines. Expert Opin Drug Discov. 2011 Jan;6(1):9-15. doi: 10.1517/17460441.2011.534454. Epub 2010 Dec 01. PMID: 22646824; PMCID: PMC4041379.
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Low Level of Her-2 Locus Amplification by Fluorescent In Situ Hybridization Does Not Correlate with Her-2 Protein Overexpression by Immunohistochemistry in Barrett's Esophagus.

Journal of oncology

Rygiel AM, Milano F, Ten Kate FJ, Bergman JJ, Krishnadath KK.
PMID: 20628513
J Oncol. 2010;2010:382582. doi: 10.1155/2010/382582. Epub 2010 Jun 09.

An accurate evaluation of the Her-2 status has important prognostic and therapeutic implications in many carcinomas. The aim of the study was to correlate Her-2 locus (17q11.2) amplification and chromosome 17 gains as assessed by fluorescent in situ hybridization...

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Rygiel AM, Milano F, Ten Kate FJ, et al. Low Level of Her-2 Locus Amplification by Fluorescent In Situ Hybridization Does Not Correlate with Her-2 Protein Overexpression by Immunohistochemistry in Barrett's Esophagus. J Oncol. 2010;2010:382582doi: 10.1155/2010/382582.
Rygiel, A. M., Milano, F., Ten Kate, F. J., Bergman, J. J., & Krishnadath, K. K. (2010). Low Level of Her-2 Locus Amplification by Fluorescent In Situ Hybridization Does Not Correlate with Her-2 Protein Overexpression by Immunohistochemistry in Barrett's Esophagus. Journal of oncology, 2010382582. https://doi.org/10.1155/2010/382582
Rygiel, Agnieszka M, et al. "Low Level of Her-2 Locus Amplification by Fluorescent In Situ Hybridization Does Not Correlate with Her-2 Protein Overexpression by Immunohistochemistry in Barrett's Esophagus." Journal of oncology vol. 2010 (2010): 382582. doi: https://doi.org/10.1155/2010/382582
Rygiel AM, Milano F, Ten Kate FJ, Bergman JJ, Krishnadath KK. Low Level of Her-2 Locus Amplification by Fluorescent In Situ Hybridization Does Not Correlate with Her-2 Protein Overexpression by Immunohistochemistry in Barrett's Esophagus. J Oncol. 2010;2010:382582. doi: 10.1155/2010/382582. Epub 2010 Jun 09. PMID: 20628513; PMCID: PMC2902046.
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