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AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana

pipeline programs

Hamada M.
GSID: RsIKDP6Pz_UJ
K Ishii, Y Kazama, T Hirano, M Hamada… - Genes & genetic …, 2016 - jstage.jst.go.jp

… In this study, we have developed a novel pipeline, AMAP (Automated Mutation Analysis Pipeline), for conducting a set of mutation analyses, mapping, removal of potential PCR duplicates, and detecting mutations using several programs. In AMAP, false positives are...

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Ishii, K., Kazama, Y., Hirano, T., Hamada, M., Ono, Y., Yamada, M., & Abe, T. (2016). AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana. Genes & genetic systems, 15-00078.
Ishii, Kotaro, et al. "AMAP: A pipeline for whole-genome mutation detection in Arabidopsis thaliana." Genes & genetic systems (2016): 15-00078.
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[Discussion. Experience in psychological conference].

Kangogaku zasshi

Yasuda C, Imano T, Watanuki K, Yamamoto N, Hamada I.
PMID: 4992129
Kangogaku Zasshi. 1970 Oct;34(10):18-31.

No abstract available.

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Yasuda C, Imano T, Watanuki K, et al. [Discussion. Experience in psychological conference]. Kangogaku Zasshi. 1970;34(10):18-31
Yasuda, C., Imano, T., Watanuki, K., Yamamoto, N., & Hamada, I. (1970). [Discussion. Experience in psychological conference]. Kangogaku zasshi, 34(10), 18-31.
Yasuda, C, et al. "[Discussion. Experience in psychological conference]." Kangogaku zasshi vol. 34,10 (1970): 18-31.
Yasuda C, Imano T, Watanuki K, Yamamoto N, Hamada I. [Discussion. Experience in psychological conference]. Kangogaku Zasshi. 1970 Oct;34(10):18-31. Japanese. PMID: 4992129.
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[Computer analysis of EEG signals based on a uniform computer system].

Ceskoslovenska psychiatrie

Pogády J, Hamala K, Krajcík J, Martisová D.
PMID: 3365790
Cesk Psychiatr. 1988 Feb;84(1):24-7.

No abstract available.

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Pogády J, Hamala K, Krajcík J, et al. Pocítacová analýza EEG signálu na báze pocítacov jednotného systému. [Computer analysis of EEG signals based on a uniform computer system]. Cesk Psychiatr. 1988;84(1):24-7
Pogády, J., Hamala, K., Krajcík, J., & Martisová, D. (1988). Pocítacová analýza EEG signálu na báze pocítacov jednotného systému. [Computer analysis of EEG signals based on a uniform computer system]. Ceskoslovenska psychiatrie, 84(1), 24-7.
Pogády, J, et al. "Pocítacová analýza EEG signálu na báze pocítacov jednotného systému." [Computer analysis of EEG signals based on a uniform computer system]. Ceskoslovenska psychiatrie vol. 84,1 (1988): 24-7.
Pogády J, Hamala K, Krajcík J, Martisová D. Pocítacová analýza EEG signálu na báze pocítacov jednotného systému. [Computer analysis of EEG signals based on a uniform computer system]. Cesk Psychiatr. 1988 Feb;84(1):24-7. Slovak. PMID: 3365790.
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Efficiency and validity of abbreviated ECG lead system composed of leads aVf, V1 and V5 as a screening test.

Annual report of the Research Institute of Environmental Medicine, Nagoya University

Yamada K, Okajima M, Okamoto N, Hori K, Kamijo M.
PMID: 5385340
Annu Rep Res Inst Environ Med Nagoya Univ. 1969;17:15-24.

No abstract available.

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Yamada K, Okajima M, Okamoto N, et al. Efficiency and validity of abbreviated ECG lead system composed of leads aVf, V1 and V5 as a screening test. Annu Rep Res Inst Environ Med Nagoya Univ. 1969;17:15-24
Yamada, K., Okajima, M., Okamoto, N., Hori, K., & Kamijo, M. (1969). Efficiency and validity of abbreviated ECG lead system composed of leads aVf, V1 and V5 as a screening test. Annual report of the Research Institute of Environmental Medicine, Nagoya University, 1715-24.
Yamada, K, et al. "Efficiency and validity of abbreviated ECG lead system composed of leads aVf, V1 and V5 as a screening test." Annual report of the Research Institute of Environmental Medicine, Nagoya University vol. 17 (1969): 15-24.
Yamada K, Okajima M, Okamoto N, Hori K, Kamijo M. Efficiency and validity of abbreviated ECG lead system composed of leads aVf, V1 and V5 as a screening test. Annu Rep Res Inst Environ Med Nagoya Univ. 1969;17:15-24. PMID: 5385340.
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[Study on mental comfort - the role of the nurse concerning mental comfort of the patient].

[Kango gijutsu] : [Nursing technique]

Yamada K.
PMID: 255649
Kango Gijutsu. 1979 Jun;25(8):140-9.

No abstract available.

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Yamada K. [Study on mental comfort - the role of the nurse concerning mental comfort of the patient]. Kango Gijutsu. 1979;25(8):140-9
Yamada, K. (1979). [Study on mental comfort - the role of the nurse concerning mental comfort of the patient]. [Kango gijutsu] : [Nursing technique], 25(8), 140-9.
Yamada, K. "[Study on mental comfort - the role of the nurse concerning mental comfort of the patient]." [Kango gijutsu] : [Nursing technique] vol. 25,8 (1979): 140-9.
Yamada K. [Study on mental comfort - the role of the nurse concerning mental comfort of the patient]. Kango Gijutsu. 1979 Jun;25(8):140-9. Japanese. PMID: 255649.
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[Benign clear cell tumor of the lung: a case report].

Kyobu geka. The Japanese journal of thoracic surgery

Higashi T, Hamada N, Toyohira H, Maruko M, Tabata D, Nishimura M, Makino M, Nakamura T.
PMID: 3326959
Kyobu Geka. 1987 Dec;40(13):1090-3.

No abstract available.

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Higashi T, Hamada N, Toyohira H, et al. [Benign clear cell tumor of the lung: a case report]. Kyobu Geka. 1987;40(13):1090-3
Higashi, T., Hamada, N., Toyohira, H., Maruko, M., Tabata, D., Nishimura, M., Makino, M., & Nakamura, T. (1987). [Benign clear cell tumor of the lung: a case report]. Kyobu geka. The Japanese journal of thoracic surgery, 40(13), 1090-3.
Higashi, T, et al. "[Benign clear cell tumor of the lung: a case report]." Kyobu geka. The Japanese journal of thoracic surgery vol. 40,13 (1987): 1090-3.
Higashi T, Hamada N, Toyohira H, Maruko M, Tabata D, Nishimura M, Makino M, Nakamura T. [Benign clear cell tumor of the lung: a case report]. Kyobu Geka. 1987 Dec;40(13):1090-3. Japanese. PMID: 3326959.
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[Statistical investigation of crowns and bridges. 1. Single crown].

Hiroshima Daigaku shigaku zasshi. The Journal of Hiroshima University Dental Society

Yamada K, Ishida H, Tamamoto M, Hamada T.
PMID: 2134244
Hiroshima Daigaku Shigaku Zasshi. 1990 Jun;22(1):190-3.

No abstract available.

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Yamada K, Ishida H, Tamamoto M, et al. [Statistical investigation of crowns and bridges. 1. Single crown]. Hiroshima Daigaku Shigaku Zasshi. 1990;22(1):190-3
Yamada, K., Ishida, H., Tamamoto, M., & Hamada, T. (1990). [Statistical investigation of crowns and bridges. 1. Single crown]. Hiroshima Daigaku shigaku zasshi. The Journal of Hiroshima University Dental Society, 22(1), 190-3.
Yamada, K, et al. "[Statistical investigation of crowns and bridges. 1. Single crown]." Hiroshima Daigaku shigaku zasshi. The Journal of Hiroshima University Dental Society vol. 22,1 (1990): 190-3.
Yamada K, Ishida H, Tamamoto M, Hamada T. [Statistical investigation of crowns and bridges. 1. Single crown]. Hiroshima Daigaku Shigaku Zasshi. 1990 Jun;22(1):190-3. Japanese. PMID: 2134244.
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[Considerations on the etiology of diabetes mellitus].

Nihon rinsho. Japanese journal of clinical medicine

Kuzuya K, Mimura G, Sasaki A, Ihara N, Yamada K.
PMID: 6069399
Nihon Rinsho. 1967 Feb;25(2):280-4.

No abstract available.

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Kuzuya K, Mimura G, Sasaki A, et al. [Considerations on the etiology of diabetes mellitus]. Nihon Rinsho. 1967;25(2):280-4
Kuzuya, K., Mimura, G., Sasaki, A., Ihara, N., & Yamada, K. (1967). [Considerations on the etiology of diabetes mellitus]. Nihon rinsho. Japanese journal of clinical medicine, 25(2), 280-4.
Kuzuya, K, et al. "[Considerations on the etiology of diabetes mellitus]." Nihon rinsho. Japanese journal of clinical medicine vol. 25,2 (1967): 280-4.
Kuzuya K, Mimura G, Sasaki A, Ihara N, Yamada K. [Considerations on the etiology of diabetes mellitus]. Nihon Rinsho. 1967 Feb;25(2):280-4. Japanese. PMID: 6069399.
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Rotator cuff tears in the patient with paraplegia.

Journal of shoulder and elbow surgery

Hanada K, Fukuda H, Hamada K, Nakajima T.
PMID: 22971671
J Shoulder Elbow Surg. 1993 Mar;2(2):64-9. doi: 10.1016/1058-2746(93)90002-X. Epub 2009 Feb 25.

Shoulder problems are common in patients with paraplegia because of long-term weight bearing that occurs when crutches or wheelchairs are used and when transfers are done. Two moderate and two large rotator cuff tears in three patients with paraplegia...

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Hanada K, Fukuda H, Hamada K, et al. Rotator cuff tears in the patient with paraplegia. J Shoulder Elbow Surg. 2009;2(2):64-9doi: 10.1016/1058-2746(93)90002-X.
Hanada, K., Fukuda, H., Hamada, K., & Nakajima, T. (1993). Rotator cuff tears in the patient with paraplegia. Journal of shoulder and elbow surgery, 2(2), 64-9. https://doi.org/10.1016/1058-2746(93)90002-X
Hanada, K, et al. "Rotator cuff tears in the patient with paraplegia." Journal of shoulder and elbow surgery vol. 2,2 (1993): 64-9. doi: https://doi.org/10.1016/1058-2746(93)90002-X
Hanada K, Fukuda H, Hamada K, Nakajima T. Rotator cuff tears in the patient with paraplegia. J Shoulder Elbow Surg. 1993 Mar;2(2):64-9. doi: 10.1016/1058-2746(93)90002-X. Epub 2009 Feb 25. PMID: 22971671.
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A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report.

Respiratory medicine case reports

Mikumo H, Hamada N, Harada E, Yanagihara T, Ogata S, Yabuuchi H, Ijichi K, Takayama K, Nakanishi Y.
PMID: 28443233
Respir Med Case Rep. 2017 Apr 08;21:89-92. doi: 10.1016/j.rmcr.2017.03.023. eCollection 2017.

A 48-year-old man was admitted for evaluation of abnormal shadows on chest radiograph. Chest computed tomography (CT) showed cysts, nodules, and cervical and axillary lymphadenopathies. Elevated serum levels of IgG4 and interleukin (IL)-6 suggested IgG4-related disease (IgG4-RD) or multicentric...

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Mikumo H, Hamada N, Harada E, et al. A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report. Respir Med Case Rep. 2017;21:89-92doi: 10.1016/j.rmcr.2017.03.023.
Mikumo, H., Hamada, N., Harada, E., Yanagihara, T., Ogata, S., Yabuuchi, H., Ijichi, K., Takayama, K., & Nakanishi, Y. (2017). A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report. Respiratory medicine case reports, 2189-92. https://doi.org/10.1016/j.rmcr.2017.03.023
Mikumo, Hironori, et al. "A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report." Respiratory medicine case reports vol. 21 (2017): 89-92. doi: https://doi.org/10.1016/j.rmcr.2017.03.023
Mikumo H, Hamada N, Harada E, Yanagihara T, Ogata S, Yabuuchi H, Ijichi K, Takayama K, Nakanishi Y. A case of immunoglobulin G4-related respiratory disease with multiple lung cysts: A case report. Respir Med Case Rep. 2017 Apr 08;21:89-92. doi: 10.1016/j.rmcr.2017.03.023. eCollection 2017. PMID: 28443233; PMCID: PMC5392773.
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Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells .

Oncology letters

Harada K, Ferdous T, Harada T, Takenawa T, Ueyama Y.
PMID: 28927087
Oncol Lett. 2017 Sep;14(3):3349-3356. doi: 10.3892/ol.2017.6602. Epub 2017 Jul 18.

Gimeracil or 5-chloro-2,4-dihydroxypyridine (CDHP) enhances the antitumor effects of 5-fluorouracil (5-FU) by inhibiting dihydropyrimidine dehydrogenase (DPD), which is involved in the degradation of 5-FU. CDHP, as part of a combination therapy, was also reported to exert a radiosensitizing effect....

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Harada K, Ferdous T, Harada T, et al. Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells . Oncol Lett. 2017;14(3):3349-3356doi: 10.3892/ol.2017.6602.
Harada, K., Ferdous, T., Harada, T., Takenawa, T., & Ueyama, Y. (2017). Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells . Oncology letters, 14(3), 3349-3356. https://doi.org/10.3892/ol.2017.6602
Harada, Koji, et al. "Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells ." Oncology letters vol. 14,3 (2017): 3349-3356. doi: https://doi.org/10.3892/ol.2017.6602
Harada K, Ferdous T, Harada T, Takenawa T, Ueyama Y. Gimeracil enhances the antitumor effect of cisplatin in oral squamous cell carcinoma cells . Oncol Lett. 2017 Sep;14(3):3349-3356. doi: 10.3892/ol.2017.6602. Epub 2017 Jul 18. PMID: 28927087; PMCID: PMC5587992.
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Acute gastric volvulus in a patient with trisomy 21.

Surgical case reports

Arima K, Hashimoto D, Takata N, Doi Y, Yoshinaka I, Harada K, Baba H.
PMID: 26943373
Surg Case Rep. 2015 Dec;1(1):5. doi: 10.1186/s40792-014-0005-1. Epub 2015 Jan 16.

Acute gastric volvulus is a torsion of the stomach by more than 180° and a life-threatening condition. We present a 50-year-old male patient with acute abdominal pain who has Down syndrome/trisomy 21. Computed tomography showed a significant distended stomach...

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Arima K, Hashimoto D, Takata N, et al. Acute gastric volvulus in a patient with trisomy 21. Surg Case Rep. 2015;1(1):5doi: 10.1186/s40792-014-0005-1.
Arima, K., Hashimoto, D., Takata, N., Doi, Y., Yoshinaka, I., Harada, K., & Baba, H. (2015). Acute gastric volvulus in a patient with trisomy 21. Surgical case reports, 1(1), 5. https://doi.org/10.1186/s40792-014-0005-1
Arima, Kota, et al. "Acute gastric volvulus in a patient with trisomy 21." Surgical case reports vol. 1,1 (2015): 5. doi: https://doi.org/10.1186/s40792-014-0005-1
Arima K, Hashimoto D, Takata N, Doi Y, Yoshinaka I, Harada K, Baba H. Acute gastric volvulus in a patient with trisomy 21. Surg Case Rep. 2015 Dec;1(1):5. doi: 10.1186/s40792-014-0005-1. Epub 2015 Jan 16. PMID: 26943373; PMCID: PMC4747932.
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Showing 1 to 12 of 3942 entries