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Tissue and Temperature-Specific RNA-Seq Analysis Reveals Genomic Versatility and Adaptive Potential in Wild Sea Turtle Hatchlings (Caretta caretta)

EPSCoR Research Infrastructure Improvement Program AND Program Evaluation

Chow JC, Godfrey MH, Harms CA.
GSID: TKdCBIwKJgQJ
JC Chow, N Kyritsis, M Mills, MH Godfrey, CA Harms… - Animals, 2021 - mdpi.com

Simple Summary Digital transcriptomics is rapidly emerging as a powerful new technology for modelling the environmental dynamics of the adaptive landscape in diverse lineages. This is particularly valuable in taxa such as turtles and tortoises (order Testudines) which contain...

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Chow, J. C., Kyritsis, N., Mills, M., Godfrey, M. H., Harms, C. A., Anderson, P. E., & Shedlock, A. M. (2021). Tissue and Temperature-Specific RNA-Seq Analysis Reveals Genomic Versatility and Adaptive Potential in Wild Sea Turtle Hatchlings (Caretta caretta). Animals, 11(11), 3013.
Chow, Julie C., et al. "Tissue and Temperature-Specific RNA-Seq Analysis Reveals Genomic Versatility and Adaptive Potential in Wild Sea Turtle Hatchlings (Caretta caretta)." Animals 11.11 (2021): 3013.
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EBF2 promotes the recruitment of beige adipocytes in white adipose tissue.

Molecular metabolism

Stine RR, Shapira SN, Lim HW, Ishibashi J, Harms M, Won KJ, Seale P.
PMID: 26844207
Mol Metab. 2015 Nov 14;5(1):57-65. doi: 10.1016/j.molmet.2015.11.001. eCollection 2016 Jan.

OBJECTIVE: The induction of beige/brite adipose cells in white adipose tissue (WAT) is associated with protection against high fat diet-induced obesity and insulin resistance in animals. The helix-loop-helix transcription factor Early B-Cell Factor-2 (EBF2) regulates brown adipose tissue development....

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Stine RR, Shapira SN, Lim HW, et al. EBF2 promotes the recruitment of beige adipocytes in white adipose tissue. Mol Metab. 2015;5(1):57-65doi: 10.1016/j.molmet.2015.11.001.
Stine, R. R., Shapira, S. N., Lim, H. W., Ishibashi, J., Harms, M., Won, K. J., & Seale, P. (2016). EBF2 promotes the recruitment of beige adipocytes in white adipose tissue. Molecular metabolism, 5(1), 57-65. https://doi.org/10.1016/j.molmet.2015.11.001
Stine, Rachel R, et al. "EBF2 promotes the recruitment of beige adipocytes in white adipose tissue." Molecular metabolism vol. 5,1 (2016): 57-65. doi: https://doi.org/10.1016/j.molmet.2015.11.001
Stine RR, Shapira SN, Lim HW, Ishibashi J, Harms M, Won KJ, Seale P. EBF2 promotes the recruitment of beige adipocytes in white adipose tissue. Mol Metab. 2015 Nov 14;5(1):57-65. doi: 10.1016/j.molmet.2015.11.001. eCollection 2016 Jan. PMID: 26844207; PMCID: PMC4703852.
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Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening.

International journal of genomics

Gurumurthy CB, Joshi PS, Kurz SG, Ohtsuka M, Quadros RM, Harms DW, Lloyd KC.
PMID: 25815306
Int J Genomics. 2015;2015:735845. doi: 10.1155/2015/735845. Epub 2015 Feb 28.

Marker assisted speed congenics technique is commonly used to facilitate backcrossing of mouse strains in nearly half the time it normally takes otherwise. Traditionally, the technique is performed by analyzing PCR amplified regions of simple sequence length polymorphism (SSLP)...

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Gurumurthy CB, Joshi PS, Kurz SG, et al. Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening. Int J Genomics. 2015;2015:735845doi: 10.1155/2015/735845.
Gurumurthy, C. B., Joshi, P. S., Kurz, S. G., Ohtsuka, M., Quadros, R. M., Harms, D. W., & Lloyd, K. C. (2015). Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening. International journal of genomics, 2015735845. https://doi.org/10.1155/2015/735845
Gurumurthy, Channabasavaiah B, et al. "Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening." International journal of genomics vol. 2015 (2015): 735845. doi: https://doi.org/10.1155/2015/735845
Gurumurthy CB, Joshi PS, Kurz SG, Ohtsuka M, Quadros RM, Harms DW, Lloyd KC. Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening. Int J Genomics. 2015;2015:735845. doi: 10.1155/2015/735845. Epub 2015 Feb 28. PMID: 25815306; PMCID: PMC4359823.
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L'enregistrement des essais cliniques dans les revues de physiothérapie : recommandations de l'International Society of Physiotherapy Journal Editors.

Physiotherapy Canada. Physiotherapie Canada

Costa LO, Lin CW, Grossi DB, Mancini MC, Swisher AK, Cook C, Vaughn D, Elkins MR, Sheikh U, Moore A, Jull G, Craik RL, Maher CG, Guirro RR, Marques AP, Harms M, Brooks D, Simoneau GG, Strupstad JH.
PMID: 24403670
Physiother Can. 2013;65(2):109-15. doi: 10.3138/ptc.65.2.GEF.

No abstract available.

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Costa LO, Lin CW, Grossi DB, et al. L'enregistrement des essais cliniques dans les revues de physiothérapie : recommandations de l'International Society of Physiotherapy Journal Editors. Physiother Can. 2013;65(2):109-15doi: 10.3138/ptc.65.2.GEF.
Costa, L. O., Lin, C. W., Grossi, D. B., Mancini, M. C., Swisher, A. K., Cook, C., Vaughn, D., Elkins, M. R., Sheikh, U., Moore, A., Jull, G., Craik, R. L., Maher, C. G., Guirro, R. R., Marques, A. P., Harms, M., Brooks, D., Simoneau, G. G., & Strupstad, J. H. (2013). L'enregistrement des essais cliniques dans les revues de physiothérapie : recommandations de l'International Society of Physiotherapy Journal Editors. Physiotherapy Canada. Physiotherapie Canada, 65(2), 109-15. https://doi.org/10.3138/ptc.65.2.GEF
Costa, Leonardo O P, et al. "L'enregistrement des essais cliniques dans les revues de physiothérapie : recommandations de l'International Society of Physiotherapy Journal Editors." Physiotherapy Canada. Physiotherapie Canada vol. 65,2 (2013): 109-15. doi: https://doi.org/10.3138/ptc.65.2.GEF
Costa LO, Lin CW, Grossi DB, Mancini MC, Swisher AK, Cook C, Vaughn D, Elkins MR, Sheikh U, Moore A, Jull G, Craik RL, Maher CG, Guirro RR, Marques AP, Harms M, Brooks D, Simoneau GG, Strupstad JH. L'enregistrement des essais cliniques dans les revues de physiothérapie : recommandations de l'International Society of Physiotherapy Journal Editors. Physiother Can. 2013;65(2):109-15. doi: 10.3138/ptc.65.2.GEF. PMID: 24403670; PMCID: PMC3673787.
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Transgenic plants of Orchardgrass (Dactylis glomerata L.) from protoplasts.

Plant cell reports

Horn ME, Shillito RD, Conger BV, Harms CT.
PMID: 24240393
Plant Cell Rep. 1988 Dec;7(7):469-72. doi: 10.1007/BF00272733.

We have demonstrated the transfer and expression of a foreign chimeric gene in the grass species, Dactylis glomerata L. This species is a member of the Gramineae sub-family Pooideae, which includes the small grain cereals, from which transformed plants...

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Horn ME, Shillito RD, Conger BV, et al. Transgenic plants of Orchardgrass (Dactylis glomerata L.) from protoplasts. Plant Cell Rep. 1988;7(7):469-72doi: 10.1007/BF00272733.
Horn, M. E., Shillito, R. D., Conger, B. V., & Harms, C. T. (1988). Transgenic plants of Orchardgrass (Dactylis glomerata L.) from protoplasts. Plant cell reports, 7(7), 469-72. https://doi.org/10.1007/BF00272733
Horn, M E, et al. "Transgenic plants of Orchardgrass (Dactylis glomerata L.) from protoplasts." Plant cell reports vol. 7,7 (1988): 469-72. doi: https://doi.org/10.1007/BF00272733
Horn ME, Shillito RD, Conger BV, Harms CT. Transgenic plants of Orchardgrass (Dactylis glomerata L.) from protoplasts. Plant Cell Rep. 1988 Dec;7(7):469-72. doi: 10.1007/BF00272733. PMID: 24240393.
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Half-life determination of the ground state decay of ¹¹¹Ag.

Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine

Collins SM, Harms AV, Regan PH.
PMID: 26720263
Appl Radiat Isot. 2016 Feb;108:143-147. doi: 10.1016/j.apradiso.2015.12.044. Epub 2015 Dec 18.

The radioactive decay half-life of the β(-)-emitter (111)Ag has been measured using decay transitions identified using a high purity germanium γ-ray spectrometer. The time series of measurements of the net peak areas of the 96.8 keV, 245.4 keV and...

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Collins SM, Harms AV, Regan PH. Half-life determination of the ground state decay of ¹¹¹Ag. Appl Radiat Isot. 2015;108:143-147doi: 10.1016/j.apradiso.2015.12.044.
Collins, S. M., Harms, A. V., & Regan, P. H. (2016). Half-life determination of the ground state decay of ¹¹¹Ag. Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine, 108143-147. https://doi.org/10.1016/j.apradiso.2015.12.044
Collins, S M, et al. "Half-life determination of the ground state decay of ¹¹¹Ag." Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine vol. 108 (2016): 143-147. doi: https://doi.org/10.1016/j.apradiso.2015.12.044
Collins SM, Harms AV, Regan PH. Half-life determination of the ground state decay of ¹¹¹Ag. Appl Radiat Isot. 2016 Feb;108:143-147. doi: 10.1016/j.apradiso.2015.12.044. Epub 2015 Dec 18. PMID: 26720263.
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Determination of Zn in high-purity GaAs with neutron activation analysis.

Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine

Kohler M, Harms AV, Alber D.
PMID: 10879861
Appl Radiat Isot. 2000 Jul;53(1):197-201. doi: 10.1016/s0969-8043(00)00133-0.

Neutron activation analysis was used to analyse Zn concentrations in high-purity GaAs. A combination of chemical separation of the neutron-induced 65Zn from the GaAs-matrix with anion-exchange chromatography and ultra low-level gamma-ray spectrometry in an underground laboratory was applied. Zn...

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Kohler M, Harms AV, Alber D. Determination of Zn in high-purity GaAs with neutron activation analysis. Appl Radiat Isot. 2000;53(1):197-201doi: 10.1016/s0969-8043(00)00133-0.
Kohler, M., Harms, A. V., & Alber, D. (2000). Determination of Zn in high-purity GaAs with neutron activation analysis. Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine, 53(1), 197-201. https://doi.org/10.1016/s0969-8043(00)00133-0
Kohler, et al. "Determination of Zn in high-purity GaAs with neutron activation analysis." Applied radiation and isotopes : including data, instrumentation and methods for use in agriculture, industry and medicine vol. 53,1 (2000): 197-201. doi: https://doi.org/10.1016/s0969-8043(00)00133-0
Kohler M, Harms AV, Alber D. Determination of Zn in high-purity GaAs with neutron activation analysis. Appl Radiat Isot. 2000 Jul;53(1):197-201. doi: 10.1016/s0969-8043(00)00133-0. PMID: 10879861.
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Gelation of a highly fluorescent urea-functionalized perylene bisimide dye.

Organic letters

Würthner F, Hanke B, Lysetska M, Lambright G, Harms GS.
PMID: 15760115
Org Lett. 2005 Mar 17;7(6):967-70. doi: 10.1021/ol0475820.

[structure: see text] A urea-containing tetraphenoxy-substituted perylene bisimide has been synthesized, and its gelation ability has been studied. This functional dye forms fluorescent organogels in toluene and tetrachloromethane through self-assembly by hydrogen-bonding and pi-pi-stacking interactions. AFM and confocal laser...

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Würthner F, Hanke B, Lysetska M, et al. Gelation of a highly fluorescent urea-functionalized perylene bisimide dye. Org Lett. 2005;7(6):967-70doi: 10.1021/ol0475820.
Würthner, F., Hanke, B., Lysetska, M., Lambright, G., & Harms, G. S. (2005). Gelation of a highly fluorescent urea-functionalized perylene bisimide dye. Organic letters, 7(6), 967-70. https://doi.org/10.1021/ol0475820
Würthner, Frank, et al. "Gelation of a highly fluorescent urea-functionalized perylene bisimide dye." Organic letters vol. 7,6 (2005): 967-70. doi: https://doi.org/10.1021/ol0475820
Würthner F, Hanke B, Lysetska M, Lambright G, Harms GS. Gelation of a highly fluorescent urea-functionalized perylene bisimide dye. Org Lett. 2005 Mar 17;7(6):967-70. doi: 10.1021/ol0475820. PMID: 15760115.
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The Low Blood Sugar Curve of Sprue.

Transactions of the American Clinical and Climatological Association

Hanes FM.
PMID: 21407520
Trans Am Clin Climatol Assoc. 1936;52:76-84.

No abstract available.

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Hanes FM. The Low Blood Sugar Curve of Sprue. Trans Am Clin Climatol Assoc. 1936;52:76-84
Hanes, F. M. (1936). The Low Blood Sugar Curve of Sprue. Transactions of the American Clinical and Climatological Association, 5276-84.
Hanes, F M. "The Low Blood Sugar Curve of Sprue." Transactions of the American Clinical and Climatological Association vol. 52 (1936): 76-84.
Hanes FM. The Low Blood Sugar Curve of Sprue. Trans Am Clin Climatol Assoc. 1936;52:76-84. PMID: 21407520; PMCID: PMC2242126.
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CHARACTERISTICS OF GROWTH OF SARCOMA AND CARCINOMA CULTIVATED IN VITRO.

The Journal of experimental medicine

Lambert RA, Hanes FM.
PMID: 19867430
J Exp Med. 1911 May 01;13(5):495-504. doi: 10.1084/jem.13.5.495.

1. The transplantable sarcomata of rats and mice grow very readily by the method of cultivating tissues in vitro. 2. Sarcomatous tissue grows in conformity to a type which may be regarded as characteristic for tissues of mesenchymal origin....

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Lambert RA, Hanes FM. CHARACTERISTICS OF GROWTH OF SARCOMA AND CARCINOMA CULTIVATED IN VITRO. J Exp Med. 1911;13(5):495-504doi: 10.1084/jem.13.5.495.
Lambert, R. A., & Hanes, F. M. (1911). CHARACTERISTICS OF GROWTH OF SARCOMA AND CARCINOMA CULTIVATED IN VITRO. The Journal of experimental medicine, 13(5), 495-504. https://doi.org/10.1084/jem.13.5.495
Lambert, R A, and Hanes, F M. "CHARACTERISTICS OF GROWTH OF SARCOMA AND CARCINOMA CULTIVATED IN VITRO." The Journal of experimental medicine vol. 13,5 (1911): 495-504. doi: https://doi.org/10.1084/jem.13.5.495
Lambert RA, Hanes FM. CHARACTERISTICS OF GROWTH OF SARCOMA AND CARCINOMA CULTIVATED IN VITRO. J Exp Med. 1911 May 01;13(5):495-504. doi: 10.1084/jem.13.5.495. PMID: 19867430; PMCID: PMC2124894.
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A STUDY OF CANCER IMMUNITY BY THE METHOD OF CULTIVATING TISSUES OUTSIDE THE BODY.

The Journal of experimental medicine

Lambert RA, Hanes FM.
PMID: 19867431
J Exp Med. 1911 May 01;13(5):505-10. doi: 10.1084/jem.13.5.505.

1. Sarcoma cultivated in plasma from immune animals grows quite as vigorously as in plasma from normal and tumor-bearing animals, thus affording further proof of the absence of specific cytolytic substances in the body fluids of animals immune to...

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Lambert RA, Hanes FM. A STUDY OF CANCER IMMUNITY BY THE METHOD OF CULTIVATING TISSUES OUTSIDE THE BODY. J Exp Med. 1911;13(5):505-10doi: 10.1084/jem.13.5.505.
Lambert, R. A., & Hanes, F. M. (1911). A STUDY OF CANCER IMMUNITY BY THE METHOD OF CULTIVATING TISSUES OUTSIDE THE BODY. The Journal of experimental medicine, 13(5), 505-10. https://doi.org/10.1084/jem.13.5.505
Lambert, R A, and Hanes, F M. "A STUDY OF CANCER IMMUNITY BY THE METHOD OF CULTIVATING TISSUES OUTSIDE THE BODY." The Journal of experimental medicine vol. 13,5 (1911): 505-10. doi: https://doi.org/10.1084/jem.13.5.505
Lambert RA, Hanes FM. A STUDY OF CANCER IMMUNITY BY THE METHOD OF CULTIVATING TISSUES OUTSIDE THE BODY. J Exp Med. 1911 May 01;13(5):505-10. doi: 10.1084/jem.13.5.505. PMID: 19867431; PMCID: PMC2124885.
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THE CULTIVATION OF TISSUE IN PLASMA FROM ALIEN SPECIES.

The Journal of experimental medicine

Lambert RA, Hanes FM.
PMID: 19867459
J Exp Med. 1911 Aug 01;14(2):129-38. doi: 10.1084/jem.14.2.129.

1. Rat sarcoma may be cultivated in mouse plasma and guinea pig plasma, and the growth differs only in extent from that observed in rat plasma. The cells may show active wandering in guinea pig plasma after thirty days,...

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Lambert RA, Hanes FM. THE CULTIVATION OF TISSUE IN PLASMA FROM ALIEN SPECIES. J Exp Med. 1911;14(2):129-38doi: 10.1084/jem.14.2.129.
Lambert, R. A., & Hanes, F. M. (1911). THE CULTIVATION OF TISSUE IN PLASMA FROM ALIEN SPECIES. The Journal of experimental medicine, 14(2), 129-38. https://doi.org/10.1084/jem.14.2.129
Lambert, R A, and Hanes, F M. "THE CULTIVATION OF TISSUE IN PLASMA FROM ALIEN SPECIES." The Journal of experimental medicine vol. 14,2 (1911): 129-38. doi: https://doi.org/10.1084/jem.14.2.129
Lambert RA, Hanes FM. THE CULTIVATION OF TISSUE IN PLASMA FROM ALIEN SPECIES. J Exp Med. 1911 Aug 01;14(2):129-38. doi: 10.1084/jem.14.2.129. PMID: 19867459; PMCID: PMC2124913.
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Showing 1 to 12 of 163 entries