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The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Biotechnology for biofuels

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.
PMID: 24834124
Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

BACKGROUND: The industrially important yeast Blastobotrys (Arxula) adeninivorans is an asexual hemiascomycete phylogenetically very distant from Saccharomyces cerevisiae. Its unusual metabolic flexibility allows it to use a wide range of carbon and nitrogen sources, while being thermotolerant, xerotolerant and...

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Kunze G, Gaillardin C, Czernicka M, et al. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels. 2014;7:66doi: 10.1186/1754-6834-7-66.
Kunze, G., Gaillardin, C., Czernicka, M., Durrens, P., Martin, T., Böer, E., Gabaldón, T., Cruz, J. A., Talla, E., Marck, C., Goffeau, A., Barbe, V., Baret, P., Baronian, K., Beier, S., Bleykasten, C., Bode, R., Casaregola, S., Despons, L., Fairhead, C., Giersberg, M., Gierski, P. P., Hähnel, U., Hartmann, A., Jankowska, D., Jubin, C., Jung, P., Lafontaine, I., Leh-Louis, V., Lemaire, M., Marcet-Houben, M., Mascher, M., Morel, G., Richard, G. F., Riechen, J., Sacerdot, C., Sarkar, A., Savel, G., Schacherer, J., Sherman, D. J., Stein, N., Straub, M. L., Thierry, A., Trautwein-Schult, A., Vacherie, B., Westhof, E., Worch, S., Dujon, B., Souciet, J. L., Wincker, P., Scholz, U., & Neuvéglise, C. (2014). The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnology for biofuels, 766. https://doi.org/10.1186/1754-6834-7-66
Kunze, Gotthard, et al. "The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest." Biotechnology for biofuels vol. 7 (2014): 66. doi: https://doi.org/10.1186/1754-6834-7-66
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014. PMID: 24834124; PMCID: PMC4022394.
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The Randomized Controlled STRAWINSKI Trial: Procalcitonin-Guided Antibiotic Therapy after Stroke.

Frontiers in neurology

Ulm L, Hoffmann S, Nabavi D, Hermans M, Mackert BM, Hamilton F, Schmehl I, Jungehuelsing GJ, Montaner J, Bustamante A, Katan M, Hartmann A, Ebmeyer S, Dinter C, Wiemer JC, Hertel S, Meisel C, Anker SD, Meisel A.
PMID: 28484421
Front Neurol. 2017 Apr 24;8:153. doi: 10.3389/fneur.2017.00153. eCollection 2017.

BACKGROUND: Pneumonia is among the most common acute complications after stroke and is associated with poor long-term outcome. Biomarkers may help identifying stroke patients at high risk for developing stroke-associated pneumonia (SAP) and to guide early treatment.AIMS: This trial...

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Ulm L, Hoffmann S, Nabavi D, et al. The Randomized Controlled STRAWINSKI Trial: Procalcitonin-Guided Antibiotic Therapy after Stroke. Front Neurol. 2017;8:153doi: 10.3389/fneur.2017.00153.
Ulm, L., Hoffmann, S., Nabavi, D., Hermans, M., Mackert, B. M., Hamilton, F., Schmehl, I., Jungehuelsing, G. J., Montaner, J., Bustamante, A., Katan, M., Hartmann, A., Ebmeyer, S., Dinter, C., Wiemer, J. C., Hertel, S., Meisel, C., Anker, S. D., & Meisel, A. (2017). The Randomized Controlled STRAWINSKI Trial: Procalcitonin-Guided Antibiotic Therapy after Stroke. Frontiers in neurology, 8153. https://doi.org/10.3389/fneur.2017.00153
Ulm, Lena, et al. "The Randomized Controlled STRAWINSKI Trial: Procalcitonin-Guided Antibiotic Therapy after Stroke." Frontiers in neurology vol. 8 (2017): 153. doi: https://doi.org/10.3389/fneur.2017.00153
Ulm L, Hoffmann S, Nabavi D, Hermans M, Mackert BM, Hamilton F, Schmehl I, Jungehuelsing GJ, Montaner J, Bustamante A, Katan M, Hartmann A, Ebmeyer S, Dinter C, Wiemer JC, Hertel S, Meisel C, Anker SD, Meisel A. The Randomized Controlled STRAWINSKI Trial: Procalcitonin-Guided Antibiotic Therapy after Stroke. Front Neurol. 2017 Apr 24;8:153. doi: 10.3389/fneur.2017.00153. eCollection 2017. PMID: 28484421; PMCID: PMC5402305.
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Predictive value of molecular subtyping in NMIBC by RT-qPCR of ERBB2, ESR1, PGR and MKI67 from formalin fixed TUR biopsies.

Oncotarget

Breyer J, Wirtz RM, Otto W, Laible M, Schlombs K, Erben P, Kriegmair MC, Stoehr R, Eidt S, Denzinger S, Burger M, Hartmann A.
PMID: 28978063
Oncotarget. 2017 Jun 28;8(40):67684-67695. doi: 10.18632/oncotarget.18804. eCollection 2017 Sep 15.

Expression of ESR1, PGR, HER2 and Ki67 is important for risk stratification and therapy in breast cancer. Hormone receptor expression can also be found in MIBC, reflecting luminal and basal subtypes of breast cancer. Thus the purpose was to...

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Breyer J, Wirtz RM, Otto W, et al. Predictive value of molecular subtyping in NMIBC by RT-qPCR of ERBB2, ESR1, PGR and MKI67 from formalin fixed TUR biopsies. Oncotarget. 2017;8(40):67684-67695doi: 10.18632/oncotarget.18804.
Breyer, J., Wirtz, R. M., Otto, W., Laible, M., Schlombs, K., Erben, P., Kriegmair, M. C., Stoehr, R., Eidt, S., Denzinger, S., Burger, M., & Hartmann, A. (2017). Predictive value of molecular subtyping in NMIBC by RT-qPCR of ERBB2, ESR1, PGR and MKI67 from formalin fixed TUR biopsies. Oncotarget, 8(40), 67684-67695. https://doi.org/10.18632/oncotarget.18804
Breyer, Johannes, et al. "Predictive value of molecular subtyping in NMIBC by RT-qPCR of ERBB2, ESR1, PGR and MKI67 from formalin fixed TUR biopsies." Oncotarget vol. 8,40 (2017): 67684-67695. doi: https://doi.org/10.18632/oncotarget.18804
Breyer J, Wirtz RM, Otto W, Laible M, Schlombs K, Erben P, Kriegmair MC, Stoehr R, Eidt S, Denzinger S, Burger M, Hartmann A. Predictive value of molecular subtyping in NMIBC by RT-qPCR of ERBB2, ESR1, PGR and MKI67 from formalin fixed TUR biopsies. Oncotarget. 2017 Jun 28;8(40):67684-67695. doi: 10.18632/oncotarget.18804. eCollection 2017 Sep 15. PMID: 28978063; PMCID: PMC5620203.
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Integrative analysis of metabolic models - from structure to dynamics.

Frontiers in bioengineering and biotechnology

Hartmann A, Schreiber F.
PMID: 25674560
Front Bioeng Biotechnol. 2015 Jan 26;2:91. doi: 10.3389/fbioe.2014.00091. eCollection 2014.

The characterization of biological systems with respect to their behavior and functionality based on versatile biochemical interactions is a major challenge. To understand these complex mechanisms at systems level modeling approaches are investigated. Different modeling formalisms allow metabolic models...

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Hartmann A, Schreiber F. Integrative analysis of metabolic models - from structure to dynamics. Front Bioeng Biotechnol. 2015;2:91doi: 10.3389/fbioe.2014.00091.
Hartmann, A., & Schreiber, F. (2014). Integrative analysis of metabolic models - from structure to dynamics. Frontiers in bioengineering and biotechnology, 291. https://doi.org/10.3389/fbioe.2014.00091
Hartmann, Anja, and Schreiber, Falk. "Integrative analysis of metabolic models - from structure to dynamics." Frontiers in bioengineering and biotechnology vol. 2 (2014): 91. doi: https://doi.org/10.3389/fbioe.2014.00091
Hartmann A, Schreiber F. Integrative analysis of metabolic models - from structure to dynamics. Front Bioeng Biotechnol. 2015 Jan 26;2:91. doi: 10.3389/fbioe.2014.00091. eCollection 2014. PMID: 25674560; PMCID: PMC4306315.
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Maternal and infant infections stimulate a rapid leukocyte response in breastmilk.

Clinical & translational immunology

Hassiotou F, Hepworth AR, Metzger P, Tat Lai C, Trengove N, Hartmann PE, Filgueira L.
PMID: 25505951
Clin Transl Immunology. 2013 Apr 12;2(4):e3. doi: 10.1038/cti.2013.1. eCollection 2013 Apr.

Breastmilk protects infants against infections; however, specific responses of breastmilk immune factors to different infections of either the mother or the infant are not well understood. Here, we examined the baseline range of breastmilk leukocytes and immunomodulatory biomolecules in...

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Hassiotou F, Hepworth AR, Metzger P, et al. Maternal and infant infections stimulate a rapid leukocyte response in breastmilk. Clin Transl Immunology. 2013;2(4):e3doi: 10.1038/cti.2013.1.
Hassiotou, F., Hepworth, A. R., Metzger, P., Tat Lai, C., Trengove, N., Hartmann, P. E., & Filgueira, L. (2013). Maternal and infant infections stimulate a rapid leukocyte response in breastmilk. Clinical & translational immunology, 2(4), e3. https://doi.org/10.1038/cti.2013.1
Hassiotou, Foteini, et al. "Maternal and infant infections stimulate a rapid leukocyte response in breastmilk." Clinical & translational immunology vol. 2,4 (2013): e3. doi: https://doi.org/10.1038/cti.2013.1
Hassiotou F, Hepworth AR, Metzger P, Tat Lai C, Trengove N, Hartmann PE, Filgueira L. Maternal and infant infections stimulate a rapid leukocyte response in breastmilk. Clin Transl Immunology. 2013 Apr 12;2(4):e3. doi: 10.1038/cti.2013.1. eCollection 2013 Apr. PMID: 25505951; PMCID: PMC4232055.
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Unresolved trauma in fibromyalgia: A cross-sectional study.

Journal of health psychology

Waller E, Scheidt CE, Endorf K, Hartmann A, Zimmermann P.
PMID: 25930076
J Health Psychol. 2016 Nov;21(11):2457-2465. doi: 10.1177/1359105315580460. Epub 2016 Jul 10.

This study examined the prevalence of unresolved attachment-related trauma and its association with physical and psychological health status in 34 patients with fibromyalgia. Unresolved trauma was assessed with the Adult Attachment Interview. In addition, participants completed self-report measures of...

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Waller E, Scheidt CE, Endorf K, et al. Unresolved trauma in fibromyalgia: A cross-sectional study. J Health Psychol. 2016;21(11):2457-2465doi: 10.1177/1359105315580460.
Waller, E., Scheidt, C. E., Endorf, K., Hartmann, A., & Zimmermann, P. (2016). Unresolved trauma in fibromyalgia: A cross-sectional study. Journal of health psychology, 21(11), 2457-2465. https://doi.org/10.1177/1359105315580460
Waller, Elisabeth, et al. "Unresolved trauma in fibromyalgia: A cross-sectional study." Journal of health psychology vol. 21,11 (2016): 2457-2465. doi: https://doi.org/10.1177/1359105315580460
Waller E, Scheidt CE, Endorf K, Hartmann A, Zimmermann P. Unresolved trauma in fibromyalgia: A cross-sectional study. J Health Psychol. 2016 Nov;21(11):2457-2465. doi: 10.1177/1359105315580460. Epub 2016 Jul 10. PMID: 25930076.
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Colonization of plants by human pathogenic bacteria in the course of organic vegetable production.

Frontiers in microbiology

Hofmann A, Fischer D, Hartmann A, Schmid M.
PMID: 24829562
Front Microbiol. 2014 May 05;5:191. doi: 10.3389/fmicb.2014.00191. eCollection 2014.

In recent years, increasing numbers of outbreaks caused by the consumption of vegetables contaminated with human pathogenic bacteria were reported. The application of organic fertilizers during vegetable production is one of the possible reasons for contamination with those pathogens....

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Hofmann A, Fischer D, Hartmann A, et al. Colonization of plants by human pathogenic bacteria in the course of organic vegetable production. Front Microbiol. 2014;5:191doi: 10.3389/fmicb.2014.00191.
Hofmann, A., Fischer, D., Hartmann, A., & Schmid, M. (2014). Colonization of plants by human pathogenic bacteria in the course of organic vegetable production. Frontiers in microbiology, 5191. https://doi.org/10.3389/fmicb.2014.00191
Hofmann, Andreas, et al. "Colonization of plants by human pathogenic bacteria in the course of organic vegetable production." Frontiers in microbiology vol. 5 (2014): 191. doi: https://doi.org/10.3389/fmicb.2014.00191
Hofmann A, Fischer D, Hartmann A, Schmid M. Colonization of plants by human pathogenic bacteria in the course of organic vegetable production. Front Microbiol. 2014 May 05;5:191. doi: 10.3389/fmicb.2014.00191. eCollection 2014. PMID: 24829562; PMCID: PMC4017148.
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Controlling arbitrary humidity without convection.

Journal of colloid and interface science

Wasnik PS, N'guessan HE, Tadmor R.
PMID: 26072445
J Colloid Interface Sci. 2015 Oct 01;455:212-9. doi: 10.1016/j.jcis.2015.04.072. Epub 2015 May 29.

In this paper we show a way that allows for the first time to induce arbitrary humidity of desired value for systems without convective flow. To enable this novelty we utilize a semi-closed environment in which evaporation is not...

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Wasnik PS, N'guessan HE, Tadmor R. Controlling arbitrary humidity without convection. J Colloid Interface Sci. 2015;455:212-9doi: 10.1016/j.jcis.2015.04.072.
Wasnik, P. S., N'guessan, H. E., & Tadmor, R. (2015). Controlling arbitrary humidity without convection. Journal of colloid and interface science, 455212-9. https://doi.org/10.1016/j.jcis.2015.04.072
Wasnik, Priyanka S, et al. "Controlling arbitrary humidity without convection." Journal of colloid and interface science vol. 455 (2015): 212-9. doi: https://doi.org/10.1016/j.jcis.2015.04.072
Wasnik PS, N'guessan HE, Tadmor R. Controlling arbitrary humidity without convection. J Colloid Interface Sci. 2015 Oct 01;455:212-9. doi: 10.1016/j.jcis.2015.04.072. Epub 2015 May 29. PMID: 26072445.
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Gastric bulging confirmed as a pancreatic solid pseudopapillary tumor by endoscopic ultrasound-guided fine needle aspiration.

Endoscopic ultrasound

Lopes CV, Hartmann AA, Almeida RF, Weiss PB.
PMID: 28621302
Endosc Ultrasound. 2017 May-Jun;6(3):212-214. doi: 10.4103/2303-9027.208175.

No abstract available.

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Lopes CV, Hartmann AA, Almeida RF, et al. Gastric bulging confirmed as a pancreatic solid pseudopapillary tumor by endoscopic ultrasound-guided fine needle aspiration. Endosc Ultrasound. 2017;6(3):212-214doi: 10.4103/2303-9027.208175.
Lopes, C. V., Hartmann, A. A., Almeida, R. F., & Weiss, P. B. (2017). Gastric bulging confirmed as a pancreatic solid pseudopapillary tumor by endoscopic ultrasound-guided fine needle aspiration. Endoscopic ultrasound, 6(3), 212-214. https://doi.org/10.4103/2303-9027.208175
Lopes, César Vivian, et al. "Gastric bulging confirmed as a pancreatic solid pseudopapillary tumor by endoscopic ultrasound-guided fine needle aspiration." Endoscopic ultrasound vol. 6,3 (2017): 212-214. doi: https://doi.org/10.4103/2303-9027.208175
Lopes CV, Hartmann AA, Almeida RF, Weiss PB. Gastric bulging confirmed as a pancreatic solid pseudopapillary tumor by endoscopic ultrasound-guided fine needle aspiration. Endosc Ultrasound. 2017 May-Jun;6(3):212-214. doi: 10.4103/2303-9027.208175. PMID: 28621302; PMCID: PMC5488528.
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Erratum to: DAPK plays an important role in panobinostat-induced autophagy and commits cells to apoptosis under autophagy deficient conditions.

Apoptosis : an international journal on programmed cell death

Gandesiri M, Chakilam S, Ivanovska J, Benderska N, Ocker M, Di Fazio P, Feoktistova M, Gali-Muhtasib H, Rave-Fränk M, Prante O, Christiansen H, Leverkus M, Hartmann A, Schneider-Stock R.
PMID: 26960313
Apoptosis. 2016 May;21(5):671-4. doi: 10.1007/s10495-016-1224-7.

No abstract available.

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Gandesiri M, Chakilam S, Ivanovska J, et al. Erratum to: DAPK plays an important role in panobinostat-induced autophagy and commits cells to apoptosis under autophagy deficient conditions. Apoptosis. 2016;21(5):671-4doi: 10.1007/s10495-016-1224-7.
Gandesiri, M., Chakilam, S., Ivanovska, J., Benderska, N., Ocker, M., Di Fazio, P., Feoktistova, M., Gali-Muhtasib, H., Rave-Fränk, M., Prante, O., Christiansen, H., Leverkus, M., Hartmann, A., & Schneider-Stock, R. (2016). Erratum to: DAPK plays an important role in panobinostat-induced autophagy and commits cells to apoptosis under autophagy deficient conditions. Apoptosis : an international journal on programmed cell death, 21(5), 671-4. https://doi.org/10.1007/s10495-016-1224-7
Gandesiri, Muktheshwar, et al. "Erratum to: DAPK plays an important role in panobinostat-induced autophagy and commits cells to apoptosis under autophagy deficient conditions." Apoptosis : an international journal on programmed cell death vol. 21,5 (2016): 671-4. doi: https://doi.org/10.1007/s10495-016-1224-7
Gandesiri M, Chakilam S, Ivanovska J, Benderska N, Ocker M, Di Fazio P, Feoktistova M, Gali-Muhtasib H, Rave-Fränk M, Prante O, Christiansen H, Leverkus M, Hartmann A, Schneider-Stock R. Erratum to: DAPK plays an important role in panobinostat-induced autophagy and commits cells to apoptosis under autophagy deficient conditions. Apoptosis. 2016 May;21(5):671-4. doi: 10.1007/s10495-016-1224-7. PMID: 26960313.
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Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast .

Frontiers in microbiology

Meier AK, Worch S, Böer E, Hartmann A, Mascher M, Marzec M, Scholz U, Riechen J, Baronian K, Schauer F, Bode R, Kunze G.
PMID: 28966611
Front Microbiol. 2017 Sep 15;8:1777. doi: 10.3389/fmicb.2017.01777. eCollection 2017.

Tannins and hydroxylated aromatic acids, such as gallic acid (3,4,5-trihydroxybenzoic acid), are plant secondary metabolites which protect plants against herbivores and plant-associated microorganisms. Some microbes, such as the yeast

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Meier AK, Worch S, Böer E, et al. Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast . Front Microbiol. 2017;8:1777doi: 10.3389/fmicb.2017.01777.
Meier, A. K., Worch, S., Böer, E., Hartmann, A., Mascher, M., Marzec, M., Scholz, U., Riechen, J., Baronian, K., Schauer, F., Bode, R., & Kunze, G. (2017). Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast . Frontiers in microbiology, 81777. https://doi.org/10.3389/fmicb.2017.01777
Meier, Anna K, et al. "Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast ." Frontiers in microbiology vol. 8 (2017): 1777. doi: https://doi.org/10.3389/fmicb.2017.01777
Meier AK, Worch S, Böer E, Hartmann A, Mascher M, Marzec M, Scholz U, Riechen J, Baronian K, Schauer F, Bode R, Kunze G. Agdc1p - a Gallic Acid Decarboxylase Involved in the Degradation of Tannic Acid in the Yeast . Front Microbiol. 2017 Sep 15;8:1777. doi: 10.3389/fmicb.2017.01777. eCollection 2017. PMID: 28966611; PMCID: PMC5605622.
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Impaired T-bet-pSTAT1α and perforin-mediated immune responses in the tumoral region of lung adenocarcinoma.

British journal of cancer

Andreev K, Trufa DI, Siegemund R, Rieker R, Hartmann A, Schmidt J, Sirbu H, Finotto S.
PMID: 27657338
Br J Cancer. 2016 Oct 25;115(9):e11. doi: 10.1038/bjc.2016.299. Epub 2016 Sep 22.

No abstract available.

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Andreev K, Trufa DI, Siegemund R, et al. Impaired T-bet-pSTAT1α and perforin-mediated immune responses in the tumoral region of lung adenocarcinoma. Br J Cancer. 2016;115(9):e11doi: 10.1038/bjc.2016.299.
Andreev, K., Trufa, D. I., Siegemund, R., Rieker, R., Hartmann, A., Schmidt, J., Sirbu, H., & Finotto, S. (2016). Impaired T-bet-pSTAT1α and perforin-mediated immune responses in the tumoral region of lung adenocarcinoma. British journal of cancer, 115(9), e11. https://doi.org/10.1038/bjc.2016.299
Andreev, Katerina, et al. "Impaired T-bet-pSTAT1α and perforin-mediated immune responses in the tumoral region of lung adenocarcinoma." British journal of cancer vol. 115,9 (2016): e11. doi: https://doi.org/10.1038/bjc.2016.299
Andreev K, Trufa DI, Siegemund R, Rieker R, Hartmann A, Schmidt J, Sirbu H, Finotto S. Impaired T-bet-pSTAT1α and perforin-mediated immune responses in the tumoral region of lung adenocarcinoma. Br J Cancer. 2016 Oct 25;115(9):e11. doi: 10.1038/bjc.2016.299. Epub 2016 Sep 22. PMID: 27657338; PMCID: PMC5117792.
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