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The Deep-Time Digital Earth program: data-driven discovery in geosciences

Cultural Transformation in the Geoscience Community AND Program Evaluation

Cheng Q, Hazen RM.
GSID: Spo-BG70gdEJ
C Wang, RM Hazen, Q Cheng… - … Science Review, 2021 - academic.oup.com

Current barriers hindering data-driven discoveries in deep-time Earth (DE) include: substantial volumes of DE data are not digitized; many DE databases do not adhere to FAIR (findable, accessible, interoperable and reusable) principles; we lack a systematic knowledge graph for...

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Wang, C., Hazen, R. M., Cheng, Q., Stephenson, M. H., Zhou, C., Fox, P., ... & Schiffries, C. M. (2021). The Deep-Time Digital Earth program: data-driven discovery in geosciences. National Science Review, 8(9), nwab027.
Wang, Chengshan, et al. "The Deep-Time Digital Earth program: data-driven discovery in geosciences." National Science Review 8.9 (2021): nwab027.
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Data-driven abductive discovery in mineralogy

Cultural Transformation in the Geoscience Community AND Program Evaluation

Hazen RM.
GSID: 7mi-ZB1oQ68J
RM Hazen - American Mineralogist, 2014 - pubs.geoscienceworld.org

Traditional pathways to discovery in Earth sciences rely in large measure on deductive and inductive approaches, by which measurements and observations are made in the context of established principles or testable, predictive hypotheses about the natural world. Vast, but...

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Hazen, R. M. (2014). Data-driven abductive discovery in mineralogy. American Mineralogist, 99(11-12), 2165-2170.
Hazen, Robert M. "Data-driven abductive discovery in mineralogy." American Mineralogist 99.11-12 (2014): 2165-2170.
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Saccharomyces boulardii to Prevent Antibiotic-Associated Diarrhea: A Randomized, Double-Masked, Placebo-Controlled Trial.

Open forum infectious diseases

Ehrhardt S, Guo N, Hinz R, Schoppen S, May J, Reiser M, Schroeder MP, Schmiedel S, Keuchel M, Reisinger EC, Langeheinecke A, de Weerth A, Schuchmann M, Schaberg T, Ligges S, Eveslage M, Hagen RM, Burchard GD, Lohse AW.
PMID: 26973849
Open Forum Infect Dis. 2016 Jan 29;3(1):ofw011. doi: 10.1093/ofid/ofw011. eCollection 2016 Jan.

Background.  Antibiotic-associated diarrhea (AAD) and Clostridium difficile-associated diarrhea (CDAD) are common complications of antibiotic use. Data on the efficacy of probiotics to prevent AAD and CDAD are unclear. We aimed to evaluate the efficacy of Saccharomyces boulardii to prevent...

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Ehrhardt S, Guo N, Hinz R, et al. Saccharomyces boulardii to Prevent Antibiotic-Associated Diarrhea: A Randomized, Double-Masked, Placebo-Controlled Trial. Open Forum Infect Dis. 2016;3(1):ofw011doi: 10.1093/ofid/ofw011.
Ehrhardt, S., Guo, N., Hinz, R., Schoppen, S., May, J., Reiser, M., Schroeder, M. P., Schmiedel, S., Keuchel, M., Reisinger, E. C., Langeheinecke, A., de Weerth, A., Schuchmann, M., Schaberg, T., Ligges, S., Eveslage, M., Hagen, R. M., Burchard, G. D., & Lohse, A. W. (2016). Saccharomyces boulardii to Prevent Antibiotic-Associated Diarrhea: A Randomized, Double-Masked, Placebo-Controlled Trial. Open forum infectious diseases, 3(1), ofw011. https://doi.org/10.1093/ofid/ofw011
Ehrhardt, Stephan, et al. "Saccharomyces boulardii to Prevent Antibiotic-Associated Diarrhea: A Randomized, Double-Masked, Placebo-Controlled Trial." Open forum infectious diseases vol. 3,1 (2016): ofw011. doi: https://doi.org/10.1093/ofid/ofw011
Ehrhardt S, Guo N, Hinz R, Schoppen S, May J, Reiser M, Schroeder MP, Schmiedel S, Keuchel M, Reisinger EC, Langeheinecke A, de Weerth A, Schuchmann M, Schaberg T, Ligges S, Eveslage M, Hagen RM, Burchard GD, Lohse AW. Saccharomyces boulardii to Prevent Antibiotic-Associated Diarrhea: A Randomized, Double-Masked, Placebo-Controlled Trial. Open Forum Infect Dis. 2016 Jan 29;3(1):ofw011. doi: 10.1093/ofid/ofw011. eCollection 2016 Jan. PMID: 26973849; PMCID: PMC4785405.
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Management of Neuropathic Pain Associated with Spinal Cord Injury.

Pain and therapy

Hagen EM, Rekand T.
PMID: 25744501
Pain Ther. 2015 Jun;4(1):51-65. doi: 10.1007/s40122-015-0033-y. Epub 2015 Mar 06.

Spinal cord injury (SCI) is an injury to the spinal cord that leads to varying degrees of motor and/or sensory deficits and paralysis. Chronic pain of both neuropathic and nociceptive type is common and contributes to reduced quality of...

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Hagen EM, Rekand T. Management of Neuropathic Pain Associated with Spinal Cord Injury. Pain Ther. 2015;4(1):51-65doi: 10.1007/s40122-015-0033-y.
Hagen, E. M., & Rekand, T. (2015). Management of Neuropathic Pain Associated with Spinal Cord Injury. Pain and therapy, 4(1), 51-65. https://doi.org/10.1007/s40122-015-0033-y
Hagen, Ellen M, and Rekand, Tiina. "Management of Neuropathic Pain Associated with Spinal Cord Injury." Pain and therapy vol. 4,1 (2015): 51-65. doi: https://doi.org/10.1007/s40122-015-0033-y
Hagen EM, Rekand T. Management of Neuropathic Pain Associated with Spinal Cord Injury. Pain Ther. 2015 Jun;4(1):51-65. doi: 10.1007/s40122-015-0033-y. Epub 2015 Mar 06. PMID: 25744501; PMCID: PMC4470971.
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GENETICS OF MIMICRY IN THE TIGER SWALLOWTAIL BUTTERFLIES, PAPILIO GLAUCUS AND P. CANADENSIS (LEPIDOPTERA: PAPILIONIDAE).

Evolution; international journal of organic evolution

Scriber JM, Hagen RH, Lederhouse RC.
PMID: 28568864
Evolution. 1996 Feb;50(1):222-236. doi: 10.1111/j.1558-5646.1996.tb04487.x.

The tiger swallowtail butterfly, Papilio glaucus, exhibits a female-limited polymorphism for Batesian mimicry; the Canadian tiger swallowtail, Papilio canadensis, lacks the mimetic (dark) form entirely. The species hybridize to a limited extent where their ranges overlap. Field collections and...

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Scriber JM, Hagen RH, Lederhouse RC. GENETICS OF MIMICRY IN THE TIGER SWALLOWTAIL BUTTERFLIES, PAPILIO GLAUCUS AND P. CANADENSIS (LEPIDOPTERA: PAPILIONIDAE). Evolution. 1996;50(1):222-236doi: 10.1111/j.1558-5646.1996.tb04487.x.
Scriber, J. M., Hagen, R. H., & Lederhouse, R. C. (1996). GENETICS OF MIMICRY IN THE TIGER SWALLOWTAIL BUTTERFLIES, PAPILIO GLAUCUS AND P. CANADENSIS (LEPIDOPTERA: PAPILIONIDAE). Evolution; international journal of organic evolution, 50(1), 222-236. https://doi.org/10.1111/j.1558-5646.1996.tb04487.x
Scriber, J Mark, et al. "GENETICS OF MIMICRY IN THE TIGER SWALLOWTAIL BUTTERFLIES, PAPILIO GLAUCUS AND P. CANADENSIS (LEPIDOPTERA: PAPILIONIDAE)." Evolution; international journal of organic evolution vol. 50,1 (1996): 222-236. doi: https://doi.org/10.1111/j.1558-5646.1996.tb04487.x
Scriber JM, Hagen RH, Lederhouse RC. GENETICS OF MIMICRY IN THE TIGER SWALLOWTAIL BUTTERFLIES, PAPILIO GLAUCUS AND P. CANADENSIS (LEPIDOPTERA: PAPILIONIDAE). Evolution. 1996 Feb;50(1):222-236. doi: 10.1111/j.1558-5646.1996.tb04487.x. PMID: 28568864.
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Incorporating big data into treatment plan evaluation: Development of statistical DVH metrics and visualization dashboards.

Advances in radiation oncology

Mayo CS, Yao J, Eisbruch A, Balter JM, Litzenberg DW, Matuszak MM, Kessler ML, Weyburn G, Anderson CJ, Owen D, Jackson WC, Haken RT.
PMID: 29114619
Adv Radiat Oncol. 2017 Apr 27;2(3):503-514. doi: 10.1016/j.adro.2017.04.005. eCollection 2017.

PURPOSE: To develop statistical dose-volume histogram (DVH)-based metrics and a visualization method to quantify the comparison of treatment plans with historical experience and among different institutions.METHODS AND MATERIALS: The descriptive statistical summary (ie, median, first and third quartiles, and...

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Mayo CS, Yao J, Eisbruch A, et al. Incorporating big data into treatment plan evaluation: Development of statistical DVH metrics and visualization dashboards. Adv Radiat Oncol. 2017;2(3):503-514doi: 10.1016/j.adro.2017.04.005.
Mayo, C. S., Yao, J., Eisbruch, A., Balter, J. M., Litzenberg, D. W., Matuszak, M. M., Kessler, M. L., Weyburn, G., Anderson, C. J., Owen, D., Jackson, W. C., & Haken, R. T. (2017). Incorporating big data into treatment plan evaluation: Development of statistical DVH metrics and visualization dashboards. Advances in radiation oncology, 2(3), 503-514. https://doi.org/10.1016/j.adro.2017.04.005
Mayo, Charles S, et al. "Incorporating big data into treatment plan evaluation: Development of statistical DVH metrics and visualization dashboards." Advances in radiation oncology vol. 2,3 (2017): 503-514. doi: https://doi.org/10.1016/j.adro.2017.04.005
Mayo CS, Yao J, Eisbruch A, Balter JM, Litzenberg DW, Matuszak MM, Kessler ML, Weyburn G, Anderson CJ, Owen D, Jackson WC, Haken RT. Incorporating big data into treatment plan evaluation: Development of statistical DVH metrics and visualization dashboards. Adv Radiat Oncol. 2017 Apr 27;2(3):503-514. doi: 10.1016/j.adro.2017.04.005. eCollection 2017. PMID: 29114619; PMCID: PMC5605288.
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Hepatic Function Model Based Upon HIDA SPECT and Dose for Physiological Adaptive RT.

Practical radiation oncology

Wang H, Feng M, Frey K, Balter J, Haken RT, Lawrence T, Cao Y.
PMID: 24674506
Pract Radiat Oncol. 2013 Apr-Jun;3(2):S2. doi: 10.1016/j.prro.2013.01.010. Epub 2013 Mar 25.

No abstract available.

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Wang H, Feng M, Frey K, et al. Hepatic Function Model Based Upon HIDA SPECT and Dose for Physiological Adaptive RT. Pract Radiat Oncol. 2013;3(2):S2doi: 10.1016/j.prro.2013.01.010.
Wang, H., Feng, M., Frey, K., Balter, J., Haken, R. T., Lawrence, T., & Cao, Y. (2013). Hepatic Function Model Based Upon HIDA SPECT and Dose for Physiological Adaptive RT. Practical radiation oncology, 3(2), S2. https://doi.org/10.1016/j.prro.2013.01.010
Wang, H, et al. "Hepatic Function Model Based Upon HIDA SPECT and Dose for Physiological Adaptive RT." Practical radiation oncology vol. 3,2 (2013): S2. doi: https://doi.org/10.1016/j.prro.2013.01.010
Wang H, Feng M, Frey K, Balter J, Haken RT, Lawrence T, Cao Y. Hepatic Function Model Based Upon HIDA SPECT and Dose for Physiological Adaptive RT. Pract Radiat Oncol. 2013 Apr-Jun;3(2):S2. doi: 10.1016/j.prro.2013.01.010. Epub 2013 Mar 25. PMID: 24674506.
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Reply.

Pain

Andresen SR, Hansen RM, Biering-Sørensen F, Hagen EM, Rice ASC, Bach FW, Finnerup NB.
PMID: 28301406
Pain. 2017 Apr;158(4):764-765. doi: 10.1097/j.pain.0000000000000822.

No abstract available.

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Andresen SR, Hansen RM, Biering-Sørensen F, et al. Reply. Pain. 2017;158(4):764-765doi: 10.1097/j.pain.0000000000000822.
Andresen, S. R., Hansen, R. M., Biering-Sørensen, F., Hagen, E. M., Rice, A. S. C., Bach, F. W., & Finnerup, N. B. (2017). Reply. Pain, 158(4), 764-765. https://doi.org/10.1097/j.pain.0000000000000822
Andresen, Sven R, et al. "Reply." Pain vol. 158,4 (2017): 764-765. doi: https://doi.org/10.1097/j.pain.0000000000000822
Andresen SR, Hansen RM, Biering-Sørensen F, Hagen EM, Rice ASC, Bach FW, Finnerup NB. Reply. Pain. 2017 Apr;158(4):764-765. doi: 10.1097/j.pain.0000000000000822. PMID: 28301406.
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Osteoporosis-Pseudoglioma in a Mauritanian Child due to a Novel Mutation in LRP5.

Case reports in genetics

Biha N, Ghaber SM, Hacen MM, Collet C.
PMID: 26904320
Case Rep Genet. 2016;2016:9814928. doi: 10.1155/2016/9814928. Epub 2016 Jan 19.

Osteoporosis-pseudoglioma (OPPG) syndrome is a very rare autosomal recessive disorder, caused by mutations in the low-density lipoprotein receptor-related protein 5 (LRP5) gene. It manifests by severe juvenile osteoporosis with congenital or infancy-onset visual loss. We describe a case of...

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Biha N, Ghaber SM, Hacen MM, et al. Osteoporosis-Pseudoglioma in a Mauritanian Child due to a Novel Mutation in LRP5. Case Rep Genet. 2016;2016:9814928doi: 10.1155/2016/9814928.
Biha, N., Ghaber, S. M., Hacen, M. M., & Collet, C. (2016). Osteoporosis-Pseudoglioma in a Mauritanian Child due to a Novel Mutation in LRP5. Case reports in genetics, 20169814928. https://doi.org/10.1155/2016/9814928
Biha, Noura, et al. "Osteoporosis-Pseudoglioma in a Mauritanian Child due to a Novel Mutation in LRP5." Case reports in genetics vol. 2016 (2016): 9814928. doi: https://doi.org/10.1155/2016/9814928
Biha N, Ghaber SM, Hacen MM, Collet C. Osteoporosis-Pseudoglioma in a Mauritanian Child due to a Novel Mutation in LRP5. Case Rep Genet. 2016;2016:9814928. doi: 10.1155/2016/9814928. Epub 2016 Jan 19. PMID: 26904320; PMCID: PMC4745298.
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Difficult identification of Haemophilus influenzae, a typical cause of upper respiratory tract infections, in the microbiological diagnostic routine.

European journal of microbiology & immunology

Hinz R, Zautner AE, Hagen RM, Frickmann H.
PMID: 25883794
Eur J Microbiol Immunol (Bp). 2015 Mar;5(1):62-7. doi: 10.1556/EUJMI-D-14-00033. Epub 2015 Mar 26.

Haemophilus influenzae is a key pathogen of upper respiratory tract infections. Its reliable discrimination from nonpathogenic Haemophilus spp. is necessary because merely colonizing bacteria are frequent at primarily unsterile sites. Due to close phylogenetic relationship, it is not easy...

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Hinz R, Zautner AE, Hagen RM, et al. Difficult identification of Haemophilus influenzae, a typical cause of upper respiratory tract infections, in the microbiological diagnostic routine. Eur J Microbiol Immunol (Bp). 2015;5(1):62-7doi: 10.1556/EUJMI-D-14-00033.
Hinz, R., Zautner, A. E., Hagen, R. M., & Frickmann, H. (2015). Difficult identification of Haemophilus influenzae, a typical cause of upper respiratory tract infections, in the microbiological diagnostic routine. European journal of microbiology & immunology, 5(1), 62-7. https://doi.org/10.1556/EUJMI-D-14-00033
Hinz, Rebecca, et al. "Difficult identification of Haemophilus influenzae, a typical cause of upper respiratory tract infections, in the microbiological diagnostic routine." European journal of microbiology & immunology vol. 5,1 (2015): 62-7. doi: https://doi.org/10.1556/EUJMI-D-14-00033
Hinz R, Zautner AE, Hagen RM, Frickmann H. Difficult identification of Haemophilus influenzae, a typical cause of upper respiratory tract infections, in the microbiological diagnostic routine. Eur J Microbiol Immunol (Bp). 2015 Mar;5(1):62-7. doi: 10.1556/EUJMI-D-14-00033. Epub 2015 Mar 26. PMID: 25883794; PMCID: PMC4397848.
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Molecular Epidemiology of Carbapenem-Resistant Acinetobacter Baumannii Complex Isolates from Patients that were Injured During the Eastern Ukrainian Conflict.

European journal of microbiology & immunology

Granzer H, Hagen RM, Warnke P, Bock W, Baumann T, Schwarz NG, Podbielski A, Frickmann H, Koeller T.
PMID: 27429793
Eur J Microbiol Immunol (Bp). 2016 May 17;6(2):109-17. doi: 10.1556/1886.2016.00014. eCollection 2016 Jun 24.

This study addressed carbapenem-resistant Acinetobacter baumannii complex (ABC) isolates from patients that were injured during the military conflict in the Eastern Ukraine and treated at German Armed Forces Hospitals in 2014 and 2015. Clonal diversity of the strains and...

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Granzer H, Hagen RM, Warnke P, et al. Molecular Epidemiology of Carbapenem-Resistant Acinetobacter Baumannii Complex Isolates from Patients that were Injured During the Eastern Ukrainian Conflict. Eur J Microbiol Immunol (Bp). 2016;6(2):109-17doi: 10.1556/1886.2016.00014.
Granzer, H., Hagen, R. M., Warnke, P., Bock, W., Baumann, T., Schwarz, N. G., Podbielski, A., Frickmann, H., & Koeller, T. (2016). Molecular Epidemiology of Carbapenem-Resistant Acinetobacter Baumannii Complex Isolates from Patients that were Injured During the Eastern Ukrainian Conflict. European journal of microbiology & immunology, 6(2), 109-17. https://doi.org/10.1556/1886.2016.00014
Granzer, Heike, et al. "Molecular Epidemiology of Carbapenem-Resistant Acinetobacter Baumannii Complex Isolates from Patients that were Injured During the Eastern Ukrainian Conflict." European journal of microbiology & immunology vol. 6,2 (2016): 109-17. doi: https://doi.org/10.1556/1886.2016.00014
Granzer H, Hagen RM, Warnke P, Bock W, Baumann T, Schwarz NG, Podbielski A, Frickmann H, Koeller T. Molecular Epidemiology of Carbapenem-Resistant Acinetobacter Baumannii Complex Isolates from Patients that were Injured During the Eastern Ukrainian Conflict. Eur J Microbiol Immunol (Bp). 2016 May 17;6(2):109-17. doi: 10.1556/1886.2016.00014. eCollection 2016 Jun 24. PMID: 27429793; PMCID: PMC4936333.
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Comparative Compressibilities of Silicate Spinels: Anomalous Behavior of (Mg,Fe)2SiO4.

Science (New York, N.Y.)

Hazen RM.
PMID: 17790986
Science. 1993 Jan 08;259(5092):206-9. doi: 10.1126/science.259.5092.206.

Compressibilities of five silicate spinels, including gamma-Mg(2)SiO(4), gamma-Fe(2)SiO(4), Ni(2)SiO(4) and two ferromagnesian compositions, were determined on crystals positioned in the same high-pressure mount. Subjection of all crystals simultaneously to the same pressure revealed differences in compressibility that resulted from...

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Hazen RM. Comparative Compressibilities of Silicate Spinels: Anomalous Behavior of (Mg,Fe)2SiO4. Science. 1993;259(5092):206-9doi: 10.1126/science.259.5092.206.
Hazen, R. M. (1993). Comparative Compressibilities of Silicate Spinels: Anomalous Behavior of (Mg,Fe)2SiO4. Science (New York, N.Y.), 259(5092), 206-9. https://doi.org/10.1126/science.259.5092.206
Hazen, R M. "Comparative Compressibilities of Silicate Spinels: Anomalous Behavior of (Mg,Fe)2SiO4." Science (New York, N.Y.) vol. 259,5092 (1993): 206-9. doi: https://doi.org/10.1126/science.259.5092.206
Hazen RM. Comparative Compressibilities of Silicate Spinels: Anomalous Behavior of (Mg,Fe)2SiO4. Science. 1993 Jan 08;259(5092):206-9. doi: 10.1126/science.259.5092.206. PMID: 17790986.
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Showing 1 to 12 of 223 entries