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Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A.

Genome announcements

Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y.
PMID: 26659677
Genome Announc. 2015 Dec 10;3(6). doi: 10.1128/genomeA.01430-15.

Nonomuraea sp. TP-A0861 produces the nonribosomal peptide myxochelin A, which is known as a microbial siderophore. Here, we report its draft genome sequence. The genome contains at least three nonribosomal peptide synthetase gene clusters, one of which is proposed...

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Komaki H, Ichikawa N, Hosoyama A, et al. Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A. Genome Announc. 2015;3(6)doi: 10.1128/genomeA.01430-15.
Komaki, H., Ichikawa, N., Hosoyama, A., Fujita, N., & Igarashi, Y. (2015). Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A. Genome announcements, 3(6), . https://doi.org/10.1128/genomeA.01430-15
Komaki, Hisayuki, et al. "Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A." Genome announcements vol. 3,6 (2015). doi: https://doi.org/10.1128/genomeA.01430-15
Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A. Genome Announc. 2015 Dec 10;3(6). doi: 10.1128/genomeA.01430-15. PMID: 26659677; PMCID: PMC4675942.
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EVOLUTIONARY ANALYSES OF THE NUCLEAR-ENCODED PHOTOSYNTHETIC GENE psbO FROM TERTIARY PLASTID-CONTAINING ALGAE IN DINOPHYTA(1).

Journal of phycology

Yokoyama A, Takahashi F, Kataoka H, Hara Y, Nozaki H.
PMID: 27021871
J Phycol. 2011 Apr;47(2):407-14. doi: 10.1111/j.1529-8817.2011.00961.x. Epub 2011 Mar 30.

Although the dinophytes generally possess red-algal-derived secondary plastids, tertiary plastids originating from haptophyte and diatom ancestors are recognized in some lineages within the Dinophyta. However, little is known about the nuclear-encoded genes of plastid-targeted proteins from the dinophytes with...

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Yokoyama A, Takahashi F, Kataoka H, et al. EVOLUTIONARY ANALYSES OF THE NUCLEAR-ENCODED PHOTOSYNTHETIC GENE psbO FROM TERTIARY PLASTID-CONTAINING ALGAE IN DINOPHYTA(1). J Phycol. 2011;47(2):407-14doi: 10.1111/j.1529-8817.2011.00961.x.
Yokoyama, A., Takahashi, F., Kataoka, H., Hara, Y., & Nozaki, H. (2011). EVOLUTIONARY ANALYSES OF THE NUCLEAR-ENCODED PHOTOSYNTHETIC GENE psbO FROM TERTIARY PLASTID-CONTAINING ALGAE IN DINOPHYTA(1). Journal of phycology, 47(2), 407-14. https://doi.org/10.1111/j.1529-8817.2011.00961.x
Yokoyama, Akiko, et al. "EVOLUTIONARY ANALYSES OF THE NUCLEAR-ENCODED PHOTOSYNTHETIC GENE psbO FROM TERTIARY PLASTID-CONTAINING ALGAE IN DINOPHYTA(1)." Journal of phycology vol. 47,2 (2011): 407-14. doi: https://doi.org/10.1111/j.1529-8817.2011.00961.x
Yokoyama A, Takahashi F, Kataoka H, Hara Y, Nozaki H. EVOLUTIONARY ANALYSES OF THE NUCLEAR-ENCODED PHOTOSYNTHETIC GENE psbO FROM TERTIARY PLASTID-CONTAINING ALGAE IN DINOPHYTA(1). J Phycol. 2011 Apr;47(2):407-14. doi: 10.1111/j.1529-8817.2011.00961.x. Epub 2011 Mar 30. PMID: 27021871.
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Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.

Genome announcements

Fujihara H, Yamazoe A, Hosoyama A, Suenaga H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Furukawa K.
PMID: 25977441
Genome Announc. 2015 May 14;3(3). doi: 10.1128/genomeA.00473-15.

Pseudomonas abietaniphila KF701 utilizes biphenyl as a sole source of carbon and degrades polychlorinated biphenyls (PCBs). Here, we report the 6,886,250-bp draft genome sequence of KF701, which contains 6,315 coding sequences and 59.4 mol% G+C content. The strain possesses...

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Fujihara H, Yamazoe A, Hosoyama A, et al. Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil. Genome Announc. 2015;3(3)doi: 10.1128/genomeA.00473-15.
Fujihara, H., Yamazoe, A., Hosoyama, A., Suenaga, H., Kimura, N., Hirose, J., Watanabe, T., Futagami, T., Goto, M., & Furukawa, K. (2015). Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil. Genome announcements, 3(3), . https://doi.org/10.1128/genomeA.00473-15
Fujihara, Hidehiko, et al. "Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil." Genome announcements vol. 3,3 (2015). doi: https://doi.org/10.1128/genomeA.00473-15
Fujihara H, Yamazoe A, Hosoyama A, Suenaga H, Kimura N, Hirose J, Watanabe T, Futagami T, Goto M, Furukawa K. Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil. Genome Announc. 2015 May 14;3(3). doi: 10.1128/genomeA.00473-15. PMID: 25977441; PMCID: PMC4432347.
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Co-localization of iron binding on silica with p62/sequestosome1 (SQSTM1) in lung granulomas of mice with acute silicosis.

Journal of clinical biochemistry and nutrition

Shimizu Y, Dobashi K, Nagase H, Ohta K, Sano T, Matsuzaki S, Ishii Y, Satoh T, Koka M, Yokoyama A, Ohkubo T, Ishii Y, Kamiya T.
PMID: 25834305
J Clin Biochem Nutr. 2015 Jan;56(1):74-83. doi: 10.3164/jcbn.14-44. Epub 2014 Nov 28.

The cellular mechanisms involved in the development of silicosis have not been fully elucidated. This study aimed to examine influence of silica-induced lung injury on autophagy. Suspensions of crystalline silica particles were administered transnasally to C57BL/6j mice. Immunohistochemical examination...

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Shimizu Y, Dobashi K, Nagase H, et al. Co-localization of iron binding on silica with p62/sequestosome1 (SQSTM1) in lung granulomas of mice with acute silicosis. J Clin Biochem Nutr. 2014;56(1):74-83doi: 10.3164/jcbn.14-44.
Shimizu, Y., Dobashi, K., Nagase, H., Ohta, K., Sano, T., Matsuzaki, S., Ishii, Y., Satoh, T., Koka, M., Yokoyama, A., Ohkubo, T., Ishii, Y., & Kamiya, T. (2015). Co-localization of iron binding on silica with p62/sequestosome1 (SQSTM1) in lung granulomas of mice with acute silicosis. Journal of clinical biochemistry and nutrition, 56(1), 74-83. https://doi.org/10.3164/jcbn.14-44
Shimizu, Yasuo, et al. "Co-localization of iron binding on silica with p62/sequestosome1 (SQSTM1) in lung granulomas of mice with acute silicosis." Journal of clinical biochemistry and nutrition vol. 56,1 (2015): 74-83. doi: https://doi.org/10.3164/jcbn.14-44
Shimizu Y, Dobashi K, Nagase H, Ohta K, Sano T, Matsuzaki S, Ishii Y, Satoh T, Koka M, Yokoyama A, Ohkubo T, Ishii Y, Kamiya T. Co-localization of iron binding on silica with p62/sequestosome1 (SQSTM1) in lung granulomas of mice with acute silicosis. J Clin Biochem Nutr. 2015 Jan;56(1):74-83. doi: 10.3164/jcbn.14-44. Epub 2014 Nov 28. PMID: 25834305; PMCID: PMC4306660.
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Operational derivation of Boltzmann distribution with Maxwell's demon model.

Scientific reports

Hosoya A, Maruyama K, Shikano Y.
PMID: 26598363
Sci Rep. 2015 Nov 24;5:17011. doi: 10.1038/srep17011.

The resolution of the Maxwell's demon paradox linked thermodynamics with information theory through information erasure principle. By considering a demon endowed with a Turing-machine consisting of a memory tape and a processor, we attempt to explore the link towards...

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Hosoya A, Maruyama K, Shikano Y. Operational derivation of Boltzmann distribution with Maxwell's demon model. Sci Rep. 2015;5:17011doi: 10.1038/srep17011.
Hosoya, A., Maruyama, K., & Shikano, Y. (2015). Operational derivation of Boltzmann distribution with Maxwell's demon model. Scientific reports, 517011. https://doi.org/10.1038/srep17011
Hosoya, Akio, et al. "Operational derivation of Boltzmann distribution with Maxwell's demon model." Scientific reports vol. 5 (2015): 17011. doi: https://doi.org/10.1038/srep17011
Hosoya A, Maruyama K, Shikano Y. Operational derivation of Boltzmann distribution with Maxwell's demon model. Sci Rep. 2015 Nov 24;5:17011. doi: 10.1038/srep17011. PMID: 26598363; PMCID: PMC4657058.
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Draft Genome Sequence of Acinetobacter calcoaceticus Strain P23, a Plant Growth-Promoting Bacterium of Duckweed.

Genome announcements

Sugawara M, Hosoyama A, Yamazoe A, Morikawa M.
PMID: 25720680
Genome Announc. 2015 Feb 26;3(1). doi: 10.1128/genomeA.00026-15.

Acinetobacter calcoaceticus strain P23 is a plant growth-promoting bacterium, which was isolated from the surface of duckweed. We report here the draft genome sequence of strain P23. The genome data will serve as a valuable reference for understanding the...

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Sugawara M, Hosoyama A, Yamazoe A, et al. Draft Genome Sequence of Acinetobacter calcoaceticus Strain P23, a Plant Growth-Promoting Bacterium of Duckweed. Genome Announc. 2015;3(1)doi: 10.1128/genomeA.00026-15.
Sugawara, M., Hosoyama, A., Yamazoe, A., & Morikawa, M. (2015). Draft Genome Sequence of Acinetobacter calcoaceticus Strain P23, a Plant Growth-Promoting Bacterium of Duckweed. Genome announcements, 3(1), . https://doi.org/10.1128/genomeA.00026-15
Sugawara, Masayuki, et al. "Draft Genome Sequence of Acinetobacter calcoaceticus Strain P23, a Plant Growth-Promoting Bacterium of Duckweed." Genome announcements vol. 3,1 (2015). doi: https://doi.org/10.1128/genomeA.00026-15
Sugawara M, Hosoyama A, Yamazoe A, Morikawa M. Draft Genome Sequence of Acinetobacter calcoaceticus Strain P23, a Plant Growth-Promoting Bacterium of Duckweed. Genome Announc. 2015 Feb 26;3(1). doi: 10.1128/genomeA.00026-15. PMID: 25720680; PMCID: PMC4342421.
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Re-certification of respiratory professionals: current practice and the future - educational forum report.

Breathe (Sheffield, England)

Sehlbach C, Thomson C, Bennett J, Perez de Llano L, Smeenk F, Yokoyama A, Horváth I, Driessen E, Rohde G.
PMID: 28620426
Breathe (Sheff). 2017 Jun;13(2):77-80. doi: 10.1183/20734735.001817.

No abstract available.

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Sehlbach C, Thomson C, Bennett J, et al. Re-certification of respiratory professionals: current practice and the future - educational forum report. Breathe (Sheff). 2017;13(2):77-80doi: 10.1183/20734735.001817.
Sehlbach, C., Thomson, C., Bennett, J., Perez de Llano, L., Smeenk, F., Yokoyama, A., Horváth, I., Driessen, E., & Rohde, G. (2017). Re-certification of respiratory professionals: current practice and the future - educational forum report. Breathe (Sheffield, England), 13(2), 77-80. https://doi.org/10.1183/20734735.001817
Sehlbach, Carolin, et al. "Re-certification of respiratory professionals: current practice and the future - educational forum report." Breathe (Sheffield, England) vol. 13,2 (2017): 77-80. doi: https://doi.org/10.1183/20734735.001817
Sehlbach C, Thomson C, Bennett J, Perez de Llano L, Smeenk F, Yokoyama A, Horváth I, Driessen E, Rohde G. Re-certification of respiratory professionals: current practice and the future - educational forum report. Breathe (Sheff). 2017 Jun;13(2):77-80. doi: 10.1183/20734735.001817. PMID: 28620426; PMCID: PMC5467866.
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Assembly, Thermodynamics, and Structure of a Two-Wheeled Composite of a Dumbbell-Shaped Molecule and Cylindrical Molecules with Different Edges.

Angewandte Chemie (International ed. in English)

Matsuno T, Kamata S, Sato S, Yokoyama A, Sarkar P, Isobe H.
PMID: 28994189
Angew Chem Int Ed Engl. 2017 Nov 20;56(47):15020-15024. doi: 10.1002/anie.201709442. Epub 2017 Oct 23.

A carbonaceous dumbbell was able to spontaneously glue two tubular receptors to form a unique two-wheeled composite through van der Waals interactions, thus forcing the wheel components into contact with each other at the edges. In the present study,...

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Matsuno T, Kamata S, Sato S, et al. Assembly, Thermodynamics, and Structure of a Two-Wheeled Composite of a Dumbbell-Shaped Molecule and Cylindrical Molecules with Different Edges. Angew Chem Int Ed Engl. 2017;56(47):15020-15024doi: 10.1002/anie.201709442.
Matsuno, T., Kamata, S., Sato, S., Yokoyama, A., Sarkar, P., & Isobe, H. (2017). Assembly, Thermodynamics, and Structure of a Two-Wheeled Composite of a Dumbbell-Shaped Molecule and Cylindrical Molecules with Different Edges. Angewandte Chemie (International ed. in English), 56(47), 15020-15024. https://doi.org/10.1002/anie.201709442
Matsuno, Taisuke, et al. "Assembly, Thermodynamics, and Structure of a Two-Wheeled Composite of a Dumbbell-Shaped Molecule and Cylindrical Molecules with Different Edges." Angewandte Chemie (International ed. in English) vol. 56,47 (2017): 15020-15024. doi: https://doi.org/10.1002/anie.201709442
Matsuno T, Kamata S, Sato S, Yokoyama A, Sarkar P, Isobe H. Assembly, Thermodynamics, and Structure of a Two-Wheeled Composite of a Dumbbell-Shaped Molecule and Cylindrical Molecules with Different Edges. Angew Chem Int Ed Engl. 2017 Nov 20;56(47):15020-15024. doi: 10.1002/anie.201709442. Epub 2017 Oct 23. PMID: 28994189.
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Zero volt paper spray ionization mass spectrometry for direct analysis of samples on filter paper substrate.

Rapid communications in mass spectrometry : RCM

Motoyama A, Kihara K.
PMID: 26411512
Rapid Commun Mass Spectrom. 2015 Oct 30;29(20):1905-16. doi: 10.1002/rcm.7292.

RATIONALE: Zero volt paper spray ionization (zvPSI) is a newly developed sample introduction/ionization technique for mass spectrometry (MS), which combines favorable features of paper spray ionization (PSI) and solvent-assisted inlet ionization (SAII). With a simple platform similar to PSI,...

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Motoyama A, Kihara K. Zero volt paper spray ionization mass spectrometry for direct analysis of samples on filter paper substrate. Rapid Commun Mass Spectrom. 2015;29(20):1905-16doi: 10.1002/rcm.7292.
Motoyama, A., & Kihara, K. (2015). Zero volt paper spray ionization mass spectrometry for direct analysis of samples on filter paper substrate. Rapid communications in mass spectrometry : RCM, 29(20), 1905-16. https://doi.org/10.1002/rcm.7292
Motoyama, Akira, and Kihara, Keishi. "Zero volt paper spray ionization mass spectrometry for direct analysis of samples on filter paper substrate." Rapid communications in mass spectrometry : RCM vol. 29,20 (2015): 1905-16. doi: https://doi.org/10.1002/rcm.7292
Motoyama A, Kihara K. Zero volt paper spray ionization mass spectrometry for direct analysis of samples on filter paper substrate. Rapid Commun Mass Spectrom. 2015 Oct 30;29(20):1905-16. doi: 10.1002/rcm.7292. PMID: 26411512.
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Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa.

Proceedings of the National Academy of Sciences of the United States of America

Honda S, Bicocca VT, Gessaman JD, Rountree MR, Yokoyama A, Yu EY, Selker JM, Selker EU.
PMID: 27681634
Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):E6135-E6144. doi: 10.1073/pnas.1614279113. Epub 2016 Sep 28.

DNA methylation, heterochromatin protein 1 (HP1), histone H3 lysine 9 (H3K9) methylation, histone deacetylation, and highly repeated sequences are prototypical heterochromatic features, but their interrelationships are not fully understood. Prior work showed that H3K9 methylation directs DNA methylation and...

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Honda S, Bicocca VT, Gessaman JD, et al. Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa. Proc Natl Acad Sci U S A. 2016;113(41):E6135-E6144doi: 10.1073/pnas.1614279113.
Honda, S., Bicocca, V. T., Gessaman, J. D., Rountree, M. R., Yokoyama, A., Yu, E. Y., Selker, J. M., & Selker, E. U. (2016). Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America, 113(41), E6135-E6144. https://doi.org/10.1073/pnas.1614279113
Honda, Shinji, et al. "Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa." Proceedings of the National Academy of Sciences of the United States of America vol. 113,41 (2016): E6135-E6144. doi: https://doi.org/10.1073/pnas.1614279113
Honda S, Bicocca VT, Gessaman JD, Rountree MR, Yokoyama A, Yu EY, Selker JM, Selker EU. Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa. Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):E6135-E6144. doi: 10.1073/pnas.1614279113. Epub 2016 Sep 28. PMID: 27681634; PMCID: PMC5068333.
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Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin.

Genome announcements

Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y.
PMID: 26659684
Genome Announc. 2015 Dec 10;3(6). doi: 10.1128/genomeA.01446-15.

Here, we report the draft genome sequence of Streptomyces sp. TP-A0356, a producer of a potent antitumor antibiotic, yatakemycin, to evaluate potential for secondary metabolite production. The genome sequence data suggest the presence of at least nine gene clusters...

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Komaki H, Ichikawa N, Hosoyama A, et al. Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin. Genome Announc. 2015;3(6)doi: 10.1128/genomeA.01446-15.
Komaki, H., Ichikawa, N., Hosoyama, A., Fujita, N., & Igarashi, Y. (2015). Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin. Genome announcements, 3(6), . https://doi.org/10.1128/genomeA.01446-15
Komaki, Hisayuki, et al. "Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin." Genome announcements vol. 3,6 (2015). doi: https://doi.org/10.1128/genomeA.01446-15
Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y. Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin. Genome Announc. 2015 Dec 10;3(6). doi: 10.1128/genomeA.01446-15. PMID: 26659684; PMCID: PMC4675949.
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Rapid production of engineered human primary hepatocyte/fibroblast sheets.

Data in brief

Sakai Y, Koike M, Soyama A, Hidaka M, Kuroki T, Eguchi S.
PMID: 26629493
Data Brief. 2015 Oct 09;5:498-501. doi: 10.1016/j.dib.2015.09.044. eCollection 2015 Dec.

This data article contains data related to the research article entitled "Vascularized subcutaneous human liver tissue from engineered hepatocyte/fibroblast sheets in mice," published in Biomaterials[1]. Engineered hepatocyte/fibroblast sheets (EHFSs) are used for construction of vascularized subcutaneous liver tissue without...

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Sakai Y, Koike M, Soyama A, et al. Rapid production of engineered human primary hepatocyte/fibroblast sheets. Data Brief. 2015;5:498-501doi: 10.1016/j.dib.2015.09.044.
Sakai, Y., Koike, M., Soyama, A., Hidaka, M., Kuroki, T., & Eguchi, S. (2015). Rapid production of engineered human primary hepatocyte/fibroblast sheets. Data in brief, 5498-501. https://doi.org/10.1016/j.dib.2015.09.044
Sakai, Yusuke, et al. "Rapid production of engineered human primary hepatocyte/fibroblast sheets." Data in brief vol. 5 (2015): 498-501. doi: https://doi.org/10.1016/j.dib.2015.09.044
Sakai Y, Koike M, Soyama A, Hidaka M, Kuroki T, Eguchi S. Rapid production of engineered human primary hepatocyte/fibroblast sheets. Data Brief. 2015 Oct 09;5:498-501. doi: 10.1016/j.dib.2015.09.044. eCollection 2015 Dec. PMID: 26629493; PMCID: PMC4631890.
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Showing 1 to 12 of 351 entries