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The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest.

Biotechnology for biofuels

Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C.
PMID: 24834124
Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014.

BACKGROUND: The industrially important yeast Blastobotrys (Arxula) adeninivorans is an asexual hemiascomycete phylogenetically very distant from Saccharomyces cerevisiae. Its unusual metabolic flexibility allows it to use a wide range of carbon and nitrogen sources, while being thermotolerant, xerotolerant and...

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Kunze G, Gaillardin C, Czernicka M, et al. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels. 2014;7:66doi: 10.1186/1754-6834-7-66.
Kunze, G., Gaillardin, C., Czernicka, M., Durrens, P., Martin, T., Böer, E., Gabaldón, T., Cruz, J. A., Talla, E., Marck, C., Goffeau, A., Barbe, V., Baret, P., Baronian, K., Beier, S., Bleykasten, C., Bode, R., Casaregola, S., Despons, L., Fairhead, C., Giersberg, M., Gierski, P. P., Hähnel, U., Hartmann, A., Jankowska, D., Jubin, C., Jung, P., Lafontaine, I., Leh-Louis, V., Lemaire, M., Marcet-Houben, M., Mascher, M., Morel, G., Richard, G. F., Riechen, J., Sacerdot, C., Sarkar, A., Savel, G., Schacherer, J., Sherman, D. J., Stein, N., Straub, M. L., Thierry, A., Trautwein-Schult, A., Vacherie, B., Westhof, E., Worch, S., Dujon, B., Souciet, J. L., Wincker, P., Scholz, U., & Neuvéglise, C. (2014). The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnology for biofuels, 766. https://doi.org/10.1186/1754-6834-7-66
Kunze, Gotthard, et al. "The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest." Biotechnology for biofuels vol. 7 (2014): 66. doi: https://doi.org/10.1186/1754-6834-7-66
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, Bleykasten C, Bode R, Casaregola S, Despons L, Fairhead C, Giersberg M, Gierski PP, Hähnel U, Hartmann A, Jankowska D, Jubin C, Jung P, Lafontaine I, Leh-Louis V, Lemaire M, Marcet-Houben M, Mascher M, Morel G, Richard GF, Riechen J, Sacerdot C, Sarkar A, Savel G, Schacherer J, Sherman DJ, Stein N, Straub ML, Thierry A, Trautwein-Schult A, Vacherie B, Westhof E, Worch S, Dujon B, Souciet JL, Wincker P, Scholz U, Neuvéglise C. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnol Biofuels. 2014 Apr 24;7:66. doi: 10.1186/1754-6834-7-66. eCollection 2014. PMID: 24834124; PMCID: PMC4022394.
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A Single-Molecular AND Gate Operated with Two Orthogonal Switching Mechanisms.

Advanced materials (Deerfield Beach, Fla.)

Zhang N, Lo WY, Jose A, Cai Z, Li L, Yu L.
PMID: 28512786
Adv Mater. 2017 Jul;29(28). doi: 10.1002/adma.201701248. Epub 2017 May 17.

Single-molecular electronics is a potential solution to nanoscale electronic devices. While simple functional single-molecule devices such as diodes, switches, and wires are well studied, complex single-molecular systems with multiple functional units are rarely investigated. Here, a single-molecule AND logic...

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Zhang N, Lo WY, Jose A, et al. A Single-Molecular AND Gate Operated with Two Orthogonal Switching Mechanisms. Adv Mater. 2017;29(28)doi: 10.1002/adma.201701248.
Zhang, N., Lo, W. Y., Jose, A., Cai, Z., Li, L., & Yu, L. (2017). A Single-Molecular AND Gate Operated with Two Orthogonal Switching Mechanisms. Advanced materials (Deerfield Beach, Fla.), 29(28), . https://doi.org/10.1002/adma.201701248
Zhang, Na, et al. "A Single-Molecular AND Gate Operated with Two Orthogonal Switching Mechanisms." Advanced materials (Deerfield Beach, Fla.) vol. 29,28 (2017). doi: https://doi.org/10.1002/adma.201701248
Zhang N, Lo WY, Jose A, Cai Z, Li L, Yu L. A Single-Molecular AND Gate Operated with Two Orthogonal Switching Mechanisms. Adv Mater. 2017 Jul;29(28). doi: 10.1002/adma.201701248. Epub 2017 May 17. PMID: 28512786.
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The role of neoadjuvant therapy in the management of locally advanced renal cell carcinoma.

Therapeutic advances in urology

Borregales LD, Adibi M, Thomas AZ, Wood CG, Karam JA.
PMID: 27034725
Ther Adv Urol. 2016 Apr;8(2):130-41. doi: 10.1177/1756287215612962. Epub 2015 Nov 20.

In the past decade, the armamentarium of targeted therapy agents for the treatment of metastatic renal cell carcinoma (RCC) has significantly increased. Improvements in response rates and survival, with more manageable side effects compared with interleukin 2/interferon immunotherapy, have...

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Borregales LD, Adibi M, Thomas AZ, et al. The role of neoadjuvant therapy in the management of locally advanced renal cell carcinoma. Ther Adv Urol. 2015;8(2):130-41doi: 10.1177/1756287215612962.
Borregales, L. D., Adibi, M., Thomas, A. Z., Wood, C. G., & Karam, J. A. (2016). The role of neoadjuvant therapy in the management of locally advanced renal cell carcinoma. Therapeutic advances in urology, 8(2), 130-41. https://doi.org/10.1177/1756287215612962
Borregales, Leonardo D, et al. "The role of neoadjuvant therapy in the management of locally advanced renal cell carcinoma." Therapeutic advances in urology vol. 8,2 (2016): 130-41. doi: https://doi.org/10.1177/1756287215612962
Borregales LD, Adibi M, Thomas AZ, Wood CG, Karam JA. The role of neoadjuvant therapy in the management of locally advanced renal cell carcinoma. Ther Adv Urol. 2016 Apr;8(2):130-41. doi: 10.1177/1756287215612962. Epub 2015 Nov 20. PMID: 27034725; PMCID: PMC4772353.
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Blood Transcriptomic Meta-analysis Identifies Dysregulation of Hemoglobin and Iron Metabolism in Parkinson' Disease.

Frontiers in aging neuroscience

Santiago JA, Potashkin JA.
PMID: 28424608
Front Aging Neurosci. 2017 Mar 29;9:73. doi: 10.3389/fnagi.2017.00073. eCollection 2017.

Disrupted iron metabolism has been implicated in the pathogenesis of Parkinson's disease (PD), a progressive neurodegenerative disorder that severely affects movement and coordination, yet the molecular mechanisms underlying this association remain unknown. To this end, we performed a transcriptomic...

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Santiago JA, Potashkin JA. Blood Transcriptomic Meta-analysis Identifies Dysregulation of Hemoglobin and Iron Metabolism in Parkinson' Disease. Front Aging Neurosci. 2017;9:73doi: 10.3389/fnagi.2017.00073.
Santiago, J. A., & Potashkin, J. A. (2017). Blood Transcriptomic Meta-analysis Identifies Dysregulation of Hemoglobin and Iron Metabolism in Parkinson' Disease. Frontiers in aging neuroscience, 973. https://doi.org/10.3389/fnagi.2017.00073
Santiago, Jose A, and Potashkin, Judith A. "Blood Transcriptomic Meta-analysis Identifies Dysregulation of Hemoglobin and Iron Metabolism in Parkinson' Disease." Frontiers in aging neuroscience vol. 9 (2017): 73. doi: https://doi.org/10.3389/fnagi.2017.00073
Santiago JA, Potashkin JA. Blood Transcriptomic Meta-analysis Identifies Dysregulation of Hemoglobin and Iron Metabolism in Parkinson' Disease. Front Aging Neurosci. 2017 Mar 29;9:73. doi: 10.3389/fnagi.2017.00073. eCollection 2017. PMID: 28424608; PMCID: PMC5372821.
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Structural Segmentation of Toru Takemitsu's Piece, Itinerant, by Advanced Level Music Graduate Students.

i-Perception

Ordoñana JA, Laucirica A.
PMID: 28515863
Iperception. 2017 May 05;8(3):2041669517705387. doi: 10.1177/2041669517705387. eCollection 2017.

This work attempts to study the way higher music graduate students segment a contemporary music work, Itinerant, and to understand the influence of musical feature on segmentation. It attempts to test the theory stating that saliences contribute to organising...

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Ordoñana JA, Laucirica A. Structural Segmentation of Toru Takemitsu's Piece, Itinerant, by Advanced Level Music Graduate Students. Iperception. 2017;8(3):2041669517705387doi: 10.1177/2041669517705387.
Ordoñana, J. A., & Laucirica, A. (2017). Structural Segmentation of Toru Takemitsu's Piece, Itinerant, by Advanced Level Music Graduate Students. i-Perception, 8(3), 2041669517705387. https://doi.org/10.1177/2041669517705387
Ordoñana, Jose A, and Laucirica, Ana. "Structural Segmentation of Toru Takemitsu's Piece, Itinerant, by Advanced Level Music Graduate Students." i-Perception vol. 8,3 (2017): 2041669517705387. doi: https://doi.org/10.1177/2041669517705387
Ordoñana JA, Laucirica A. Structural Segmentation of Toru Takemitsu's Piece, Itinerant, by Advanced Level Music Graduate Students. Iperception. 2017 May 05;8(3):2041669517705387. doi: 10.1177/2041669517705387. eCollection 2017. PMID: 28515863; PMCID: PMC5423594.
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Spin crossover star-shaped metallomesogens of iron(II).

Inorganic chemistry

Seredyuk M, Muñoz MC, Ksenofontov V, Gütlich P, Galyametdinov Y, Real JA.
PMID: 25084478
Inorg Chem. 2014 Aug 18;53(16):8442-54. doi: 10.1021/ic5010159. Epub 2014 Aug 01.

Three new types of spin crossover (SCO) metallomesogens of Fe(II) based on symmetric tripod ligands and their magnetic and structural properties are reported here. These were obtained by condensation of tris(2-aminoethyl)amin (tren) with the aldehyde derived from 3-alkoxy-6-methylpyridine (mpyN,...

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Seredyuk M, Muñoz MC, Ksenofontov V, et al. Spin crossover star-shaped metallomesogens of iron(II). Inorg Chem. 2014;53(16):8442-54doi: 10.1021/ic5010159.
Seredyuk, M., Muñoz, M. C., Ksenofontov, V., Gütlich, P., Galyametdinov, Y., & Real, J. A. (2014). Spin crossover star-shaped metallomesogens of iron(II). Inorganic chemistry, 53(16), 8442-54. https://doi.org/10.1021/ic5010159
Seredyuk, Maksym, et al. "Spin crossover star-shaped metallomesogens of iron(II)." Inorganic chemistry vol. 53,16 (2014): 8442-54. doi: https://doi.org/10.1021/ic5010159
Seredyuk M, Muñoz MC, Ksenofontov V, Gütlich P, Galyametdinov Y, Real JA. Spin crossover star-shaped metallomesogens of iron(II). Inorg Chem. 2014 Aug 18;53(16):8442-54. doi: 10.1021/ic5010159. Epub 2014 Aug 01. PMID: 25084478.
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The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis.

Frontiers in plant science

Jones DM, Murray CM, Ketelaar KJ, Thomas JJ, Villalobos JA, Wallace IS.
PMID: 27252710
Front Plant Sci. 2016 May 24;7:684. doi: 10.3389/fpls.2016.00684. eCollection 2016.

Plant cell walls are extracellular matrices that surround plant cells and critically influence basic cellular processes, such as cell division and expansion. Cellulose is a major constituent of plant cell walls, and this paracrystalline polysaccharide is synthesized at the...

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Jones DM, Murray CM, Ketelaar KJ, et al. The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis. Front Plant Sci. 2016;7:684doi: 10.3389/fpls.2016.00684.
Jones, D. M., Murray, C. M., Ketelaar, K. J., Thomas, J. J., Villalobos, J. A., & Wallace, I. S. (2016). The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis. Frontiers in plant science, 7684. https://doi.org/10.3389/fpls.2016.00684
Jones, Danielle M, et al. "The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis." Frontiers in plant science vol. 7 (2016): 684. doi: https://doi.org/10.3389/fpls.2016.00684
Jones DM, Murray CM, Ketelaar KJ, Thomas JJ, Villalobos JA, Wallace IS. The Emerging Role of Protein Phosphorylation as a Critical Regulatory Mechanism Controlling Cellulose Biosynthesis. Front Plant Sci. 2016 May 24;7:684. doi: 10.3389/fpls.2016.00684. eCollection 2016. PMID: 27252710; PMCID: PMC4877384.
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Correction: Metformin Induces Cell Cycle Arrest, Reduced Proliferation, Wound Healing Impairment In Vivo and Is Associated to Clinical Outcomes in Diabetic Foot Ulcer Patients.

PloS one

Ochoa-Gonzalez F, Cervantes-Villagrana AR, Fernandez-Ruiz JC, Nava-Ramirez HS, Hernandez-Correa AC, Enciso-Moreno JA, Castañeda-Delgado JE.
PMID: 27403528
PLoS One. 2016 Jul 12;11(7):e0159468. doi: 10.1371/journal.pone.0159468. eCollection 2016.

[This corrects the article DOI: 10.1371/journal.pone.0150900.].

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Ochoa-Gonzalez F, Cervantes-Villagrana AR, Fernandez-Ruiz JC, et al. Correction: Metformin Induces Cell Cycle Arrest, Reduced Proliferation, Wound Healing Impairment In Vivo and Is Associated to Clinical Outcomes in Diabetic Foot Ulcer Patients. PLoS One. 2016;11(7):e0159468doi: 10.1371/journal.pone.0159468.
Ochoa-Gonzalez, F., Cervantes-Villagrana, A. R., Fernandez-Ruiz, J. C., Nava-Ramirez, H. S., Hernandez-Correa, A. C., Enciso-Moreno, J. A., & Castañeda-Delgado, J. E. (2016). Correction: Metformin Induces Cell Cycle Arrest, Reduced Proliferation, Wound Healing Impairment In Vivo and Is Associated to Clinical Outcomes in Diabetic Foot Ulcer Patients. PloS one, 11(7), e0159468. https://doi.org/10.1371/journal.pone.0159468
Ochoa-Gonzalez, Fatima, et al. "Correction: Metformin Induces Cell Cycle Arrest, Reduced Proliferation, Wound Healing Impairment In Vivo and Is Associated to Clinical Outcomes in Diabetic Foot Ulcer Patients." PloS one vol. 11,7 (2016): e0159468. doi: https://doi.org/10.1371/journal.pone.0159468
Ochoa-Gonzalez F, Cervantes-Villagrana AR, Fernandez-Ruiz JC, Nava-Ramirez HS, Hernandez-Correa AC, Enciso-Moreno JA, Castañeda-Delgado JE. Correction: Metformin Induces Cell Cycle Arrest, Reduced Proliferation, Wound Healing Impairment In Vivo and Is Associated to Clinical Outcomes in Diabetic Foot Ulcer Patients. PLoS One. 2016 Jul 12;11(7):e0159468. doi: 10.1371/journal.pone.0159468. eCollection 2016. PMID: 27403528; PMCID: PMC4942031.
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Ternary ionic liquid-water pretreatment systems of an agave bagasse and municipal solid waste blend.

Biotechnology for biofuels

Perez-Pimienta JA, Sathitsuksanoh N, Thompson VS, Tran K, Ponce-Noyola T, Stavila V, Singh S, Simmons BA.
PMID: 28344647
Biotechnol Biofuels. 2017 Mar 21;10:72. doi: 10.1186/s13068-017-0758-4. eCollection 2017.

BACKGROUND: Pretreatment is necessary to reduce biomass recalcitrance and enhance the efficiency of enzymatic saccharification for biofuel production. Ionic liquid (IL) pretreatment has gained a significant interest as a pretreatment process that can reduce cellulose crystallinity and remove lignin,...

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Perez-Pimienta JA, Sathitsuksanoh N, Thompson VS, et al. Ternary ionic liquid-water pretreatment systems of an agave bagasse and municipal solid waste blend. Biotechnol Biofuels. 2017;10:72doi: 10.1186/s13068-017-0758-4.
Perez-Pimienta, J. A., Sathitsuksanoh, N., Thompson, V. S., Tran, K., Ponce-Noyola, T., Stavila, V., Singh, S., & Simmons, B. A. (2017). Ternary ionic liquid-water pretreatment systems of an agave bagasse and municipal solid waste blend. Biotechnology for biofuels, 1072. https://doi.org/10.1186/s13068-017-0758-4
Perez-Pimienta, Jose A, et al. "Ternary ionic liquid-water pretreatment systems of an agave bagasse and municipal solid waste blend." Biotechnology for biofuels vol. 10 (2017): 72. doi: https://doi.org/10.1186/s13068-017-0758-4
Perez-Pimienta JA, Sathitsuksanoh N, Thompson VS, Tran K, Ponce-Noyola T, Stavila V, Singh S, Simmons BA. Ternary ionic liquid-water pretreatment systems of an agave bagasse and municipal solid waste blend. Biotechnol Biofuels. 2017 Mar 21;10:72. doi: 10.1186/s13068-017-0758-4. eCollection 2017. PMID: 28344647; PMCID: PMC5361851.
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Characterization of Phytophthora nicotianae isolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR.

Journal of the science of food and agriculture

Blaya J, Lacasa C, Lacasa A, Martínez V, Santísima-Trinidad AB, Pascual JA, Ros M.
PMID: 26132099
J Sci Food Agric. 2015 Aug 30;95(11):2354. doi: 10.1002/jsfa.7300. Epub 2015 Jun 09.

No abstract available.

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Blaya J, Lacasa C, Lacasa A, et al. Characterization of Phytophthora nicotianae isolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR. J Sci Food Agric. 2015;95(11):2354doi: 10.1002/jsfa.7300.
Blaya, J., Lacasa, C., Lacasa, A., Martínez, V., Santísima-Trinidad, A. B., Pascual, J. A., & Ros, M. (2015). Characterization of Phytophthora nicotianae isolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR. Journal of the science of food and agriculture, 95(11), 2354. https://doi.org/10.1002/jsfa.7300
Blaya, Josefa, et al. "Characterization of Phytophthora nicotianae isolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR." Journal of the science of food and agriculture vol. 95,11 (2015): 2354. doi: https://doi.org/10.1002/jsfa.7300
Blaya J, Lacasa C, Lacasa A, Martínez V, Santísima-Trinidad AB, Pascual JA, Ros M. Characterization of Phytophthora nicotianae isolates in southeast Spain and their detection and quantification through a real-time TaqMan PCR. J Sci Food Agric. 2015 Aug 30;95(11):2354. doi: 10.1002/jsfa.7300. Epub 2015 Jun 09. PMID: 26132099.
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Jammed elastic shells - a 3D experimental soft frictionless granular system.

Soft matter

Jose J, Blab GA, van Blaaderen A, Imhof A.
PMID: 25608643
Soft Matter. 2015 Mar 07;11(9):1800-13. doi: 10.1039/c4sm02098g.

We present a new experimental system of monodisperse, soft, frictionless, fluorescent labeled elastic shells for the characterization of structure, universal scaling laws and force networks in 3D jammed matter. The elastic shells in a jammed packing are deformed in...

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Jose J, Blab GA, van Blaaderen A, et al. Jammed elastic shells - a 3D experimental soft frictionless granular system. Soft Matter. 2015;11(9):1800-13doi: 10.1039/c4sm02098g.
Jose, J., Blab, G. A., van Blaaderen, A., & Imhof, A. (2015). Jammed elastic shells - a 3D experimental soft frictionless granular system. Soft matter, 11(9), 1800-13. https://doi.org/10.1039/c4sm02098g
Jose, Jissy, et al. "Jammed elastic shells - a 3D experimental soft frictionless granular system." Soft matter vol. 11,9 (2015): 1800-13. doi: https://doi.org/10.1039/c4sm02098g
Jose J, Blab GA, van Blaaderen A, Imhof A. Jammed elastic shells - a 3D experimental soft frictionless granular system. Soft Matter. 2015 Mar 07;11(9):1800-13. doi: 10.1039/c4sm02098g. PMID: 25608643.
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Gastrointestinal Kaposi's sarcoma involving stomach, duodenum, and colon.

Annals of gastroenterology

Gonzalez-Moreno EI, Martinez-Cabriales SA, Gonzalez-Gonzalez JA, Garcia-Compean D, Ocampo-Candiani J, Maldonado-Garza HJ.
PMID: 26126662
Ann Gastroenterol. 2015 Jul-Sep;28(3):405.

No abstract available.

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Gonzalez-Moreno EI, Martinez-Cabriales SA, Gonzalez-Gonzalez JA, et al. Gastrointestinal Kaposi's sarcoma involving stomach, duodenum, and colon. Ann Gastroenterol. 2015;28(3):405
Gonzalez-Moreno, E. I., Martinez-Cabriales, S. A., Gonzalez-Gonzalez, J. A., Garcia-Compean, D., Ocampo-Candiani, J., & Maldonado-Garza, H. J. (2015). Gastrointestinal Kaposi's sarcoma involving stomach, duodenum, and colon. Annals of gastroenterology, 28(3), 405.
Gonzalez-Moreno, Emmanuel I, et al. "Gastrointestinal Kaposi's sarcoma involving stomach, duodenum, and colon." Annals of gastroenterology vol. 28,3 (2015): 405.
Gonzalez-Moreno EI, Martinez-Cabriales SA, Gonzalez-Gonzalez JA, Garcia-Compean D, Ocampo-Candiani J, Maldonado-Garza HJ. Gastrointestinal Kaposi's sarcoma involving stomach, duodenum, and colon. Ann Gastroenterol. 2015 Jul-Sep;28(3):405. PMID: 26126662; PMCID: PMC4460382.
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