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Design and Development: NSF Engineering Research Centers Unite: Developing and Testing a Suite of Instruments to Enhance Overall Education Program …

Broadening participation in STEM

Carberry A, Jordan M, Larson J.
GSID: S_pAwygNheYJ
Z Zhao, A Carberry, J Larson, M Jordan… - American Society for …, 2021 - par.nsf.gov

National Science Foundation (NSF) funded Engineering Research Centers (ERC) must complement their technical research with various education and outreach opportunities to: 1) improve and promote engineering education, both within the center and to the local community; 2) encourage and...

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Zhao, Z., Carberry, A., Larson, J., Jordan, M., Savenye, W., Eustice, K., ... & Farnsworth, K. (2021, January). Design and Development: NSF Engineering Research Centers Unite: Developing and Testing a Suite of Instruments to Enhance Overall Education Program Evaluation. In American Society for Engineering Education.
Zhao, Zhen, et al. "Design and Development: NSF Engineering Research Centers Unite: Developing and Testing a Suite of Instruments to Enhance Overall Education Program Evaluation." American Society for Engineering Education. 2021.
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New measurements of high-momentum nucleons and short-range structures in nuclei.

Physical review letters

Fomin N, Arrington J, Asaturyan R, Benmokhtar F, Boeglin W, Bosted P, Bruell A, Bukhari MH, Christy ME, Chudakov E, Clasie B, Connell SH, Dalton MM, Daniel A, Day DB, Dutta D, Ent R, El Fassi L, Fenker H, Filippone BW, Garrow K, Gaskell D, Hill C, Holt RJ, Horn T, Jones MK, Jourdan J, Kalantarians N, Keppel CE, Kiselev D, Kotulla M, Lindgren R, Lung AF, Malace S, Markowitz P, McKee P, Meekins DG, Mkrtchyan H, Navasardyan T, Niculescu G, Opper AK, Perdrisat C, Potterveld DH, Punjabi V, Qian X, Reimer PE, Roche J, Rodriguez VM, Rondon O, Schulte E, Seely J, Segbefia E, Slifer K, Smith GR, Solvignon P, Tadevosyan V, Tajima S, Tang L, Testa G, Trojer R, Tvaskis V, Vulcan WF, Wasko C, Wesselmann FR, Wood SA, Wright J, Zheng X.
PMID: 22463628
Phys Rev Lett. 2012 Mar 02;108(9):092502. doi: 10.1103/PhysRevLett.108.092502. Epub 2012 Feb 29.

We present new measurements of electron scattering from high-momentum nucleons in nuclei. These data allow an improved determination of the strength of two-nucleon correlations for several nuclei, including light nuclei where clustering effects can, for the first time, be...

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Fomin N, Arrington J, Asaturyan R, et al. New measurements of high-momentum nucleons and short-range structures in nuclei. Phys Rev Lett. 2012;108(9):092502doi: 10.1103/PhysRevLett.108.092502.
Fomin, N., Arrington, J., Asaturyan, R., Benmokhtar, F., Boeglin, W., Bosted, P., Bruell, A., Bukhari, M. H., Christy, M. E., Chudakov, E., Clasie, B., Connell, S. H., Dalton, M. M., Daniel, A., Day, D. B., Dutta, D., Ent, R., El Fassi, L., Fenker, H., Filippone, B. W., Garrow, K., Gaskell, D., Hill, C., Holt, R. J., Horn, T., Jones, M. K., Jourdan, J., Kalantarians, N., Keppel, C. E., Kiselev, D., Kotulla, M., Lindgren, R., Lung, A. F., Malace, S., Markowitz, P., McKee, P., Meekins, D. G., Mkrtchyan, H., Navasardyan, T., Niculescu, G., Opper, A. K., Perdrisat, C., Potterveld, D. H., Punjabi, V., Qian, X., Reimer, P. E., Roche, J., Rodriguez, V. M., Rondon, O., Schulte, E., Seely, J., Segbefia, E., Slifer, K., Smith, G. R., Solvignon, P., Tadevosyan, V., Tajima, S., Tang, L., Testa, G., Trojer, R., Tvaskis, V., Vulcan, W. F., Wasko, C., Wesselmann, F. R., Wood, S. A., Wright, J., & Zheng, X. (2012). New measurements of high-momentum nucleons and short-range structures in nuclei. Physical review letters, 108(9), 092502. https://doi.org/10.1103/PhysRevLett.108.092502
Fomin, N, et al. "New measurements of high-momentum nucleons and short-range structures in nuclei." Physical review letters vol. 108,9 (2012): 092502. doi: https://doi.org/10.1103/PhysRevLett.108.092502
Fomin N, Arrington J, Asaturyan R, Benmokhtar F, Boeglin W, Bosted P, Bruell A, Bukhari MH, Christy ME, Chudakov E, Clasie B, Connell SH, Dalton MM, Daniel A, Day DB, Dutta D, Ent R, El Fassi L, Fenker H, Filippone BW, Garrow K, Gaskell D, Hill C, Holt RJ, Horn T, Jones MK, Jourdan J, Kalantarians N, Keppel CE, Kiselev D, Kotulla M, Lindgren R, Lung AF, Malace S, Markowitz P, McKee P, Meekins DG, Mkrtchyan H, Navasardyan T, Niculescu G, Opper AK, Perdrisat C, Potterveld DH, Punjabi V, Qian X, Reimer PE, Roche J, Rodriguez VM, Rondon O, Schulte E, Seely J, Segbefia E, Slifer K, Smith GR, Solvignon P, Tadevosyan V, Tajima S, Tang L, Testa G, Trojer R, Tvaskis V, Vulcan WF, Wasko C, Wesselmann FR, Wood SA, Wright J, Zheng X. New measurements of high-momentum nucleons and short-range structures in nuclei. Phys Rev Lett. 2012 Mar 02;108(9):092502. doi: 10.1103/PhysRevLett.108.092502. Epub 2012 Feb 29. PMID: 22463628.
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Reply to Sun et al.: Confirming the evidence for Late Oligocene-Early Miocene birth of the Taklimakan Desert.

Proceedings of the National Academy of Sciences of the United States of America

Zheng H, Wei X, Tada R, Clift PD, Wang B, Jourdan F, Wang P, He M.
PMID: 26430244
Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):E5558-9. doi: 10.1073/pnas.1517735112. Epub 2015 Oct 01.

No abstract available.

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Zheng H, Wei X, Tada R, et al. Reply to Sun et al.: Confirming the evidence for Late Oligocene-Early Miocene birth of the Taklimakan Desert. Proc Natl Acad Sci U S A. 2015;112(41):E5558-9doi: 10.1073/pnas.1517735112.
Zheng, H., Wei, X., Tada, R., Clift, P. D., Wang, B., Jourdan, F., Wang, P., & He, M. (2015). Reply to Sun et al.: Confirming the evidence for Late Oligocene-Early Miocene birth of the Taklimakan Desert. Proceedings of the National Academy of Sciences of the United States of America, 112(41), E5558-9. https://doi.org/10.1073/pnas.1517735112
Zheng, Hongbo, et al. "Reply to Sun et al.: Confirming the evidence for Late Oligocene-Early Miocene birth of the Taklimakan Desert." Proceedings of the National Academy of Sciences of the United States of America vol. 112,41 (2015): E5558-9. doi: https://doi.org/10.1073/pnas.1517735112
Zheng H, Wei X, Tada R, Clift PD, Wang B, Jourdan F, Wang P, He M. Reply to Sun et al.: Confirming the evidence for Late Oligocene-Early Miocene birth of the Taklimakan Desert. Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):E5558-9. doi: 10.1073/pnas.1517735112. Epub 2015 Oct 01. PMID: 26430244; PMCID: PMC4611666.
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An Algorithm for Calculating the Probability of Classes of Data Patterns on a Genealogy.

PLoS currents

Koch JM, Holder MT.
PMID: 23868168
PLoS Curr. 2012 Dec 14;4:e4fd1286980c08. doi: 10.1371/4fd1286980c08.

Felsenstein's pruning algorithm allows one to calculate the probability of any particular data pattern arising on a phylogeny given a model of character evolution. Here we present a similar dynamic programming algorithm. Our algorithm treats the tree and model...

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Koch JM, Holder MT. An Algorithm for Calculating the Probability of Classes of Data Patterns on a Genealogy. PLoS Curr. 2012;4:e4fd1286980c08doi: 10.1371/4fd1286980c08.
Koch, J. M., & Holder, M. T. (2012). An Algorithm for Calculating the Probability of Classes of Data Patterns on a Genealogy. PLoS currents, 4e4fd1286980c08. https://doi.org/10.1371/4fd1286980c08
Koch, Jordan M, and Holder, Mark T. "An Algorithm for Calculating the Probability of Classes of Data Patterns on a Genealogy." PLoS currents vol. 4 (2012): e4fd1286980c08. doi: https://doi.org/10.1371/4fd1286980c08
Koch JM, Holder MT. An Algorithm for Calculating the Probability of Classes of Data Patterns on a Genealogy. PLoS Curr. 2012 Dec 14;4:e4fd1286980c08. doi: 10.1371/4fd1286980c08. PMID: 23868168; PMCID: PMC3712476.
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Complications after Fusion for Thoracolumbar Fractures in Patients with Ankylosing Spondylitis.

Global spine journal

Puvanesarajah V, Cancienne JM, Shimer AL, Shen FH, Hassanzadeh H.
PMID: 28451506
Global Spine J. 2017 Feb;7(1):28-32. doi: 10.1055/s-0036-1583175. Epub 2017 Feb 01.

STUDY DESIGN: Retrospective analysis of a Medicare database (2005 to 2012).OBJECTIVE: To study postoperative complication rates following thoracolumbar fusion for traumatic thoracolumbar fracture in patients with ankylosing spondylitis (AS) compared with patients without AS.METHODS: The PearlDiver database (2005 to...

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Puvanesarajah V, Cancienne JM, Shimer AL, et al. Complications after Fusion for Thoracolumbar Fractures in Patients with Ankylosing Spondylitis. Global Spine J. 2017;7(1):28-32doi: 10.1055/s-0036-1583175.
Puvanesarajah, V., Cancienne, J. M., Shimer, A. L., Shen, F. H., & Hassanzadeh, H. (2017). Complications after Fusion for Thoracolumbar Fractures in Patients with Ankylosing Spondylitis. Global spine journal, 7(1), 28-32. https://doi.org/10.1055/s-0036-1583175
Puvanesarajah, Varun, et al. "Complications after Fusion for Thoracolumbar Fractures in Patients with Ankylosing Spondylitis." Global spine journal vol. 7,1 (2017): 28-32. doi: https://doi.org/10.1055/s-0036-1583175
Puvanesarajah V, Cancienne JM, Shimer AL, Shen FH, Hassanzadeh H. Complications after Fusion for Thoracolumbar Fractures in Patients with Ankylosing Spondylitis. Global Spine J. 2017 Feb;7(1):28-32. doi: 10.1055/s-0036-1583175. Epub 2017 Feb 01. PMID: 28451506; PMCID: PMC5400163.
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Dissipation Bounds All Steady-State Current Fluctuations.

Physical review letters

Gingrich TR, Horowitz JM, Perunov N, England JL.
PMID: 27058064
Phys Rev Lett. 2016 Mar 25;116(12):120601. doi: 10.1103/PhysRevLett.116.120601. Epub 2016 Mar 21.

Near equilibrium, small current fluctuations are described by a Gaussian distribution with a linear-response variance regulated by the dissipation. Here, we demonstrate that dissipation still plays a dominant role in structuring large fluctuations arbitrarily far from equilibrium. In particular,...

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Gingrich TR, Horowitz JM, Perunov N, et al. Dissipation Bounds All Steady-State Current Fluctuations. Phys Rev Lett. 2016;116(12):120601doi: 10.1103/PhysRevLett.116.120601.
Gingrich, T. R., Horowitz, J. M., Perunov, N., & England, J. L. (2016). Dissipation Bounds All Steady-State Current Fluctuations. Physical review letters, 116(12), 120601. https://doi.org/10.1103/PhysRevLett.116.120601
Gingrich, Todd R, et al. "Dissipation Bounds All Steady-State Current Fluctuations." Physical review letters vol. 116,12 (2016): 120601. doi: https://doi.org/10.1103/PhysRevLett.116.120601
Gingrich TR, Horowitz JM, Perunov N, England JL. Dissipation Bounds All Steady-State Current Fluctuations. Phys Rev Lett. 2016 Mar 25;116(12):120601. doi: 10.1103/PhysRevLett.116.120601. Epub 2016 Mar 21. PMID: 27058064.
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The future of metabolomics in ELIXIR.

F1000Research

van Rijswijk M, Beirnaert C, Caron C, Cascante M, Dominguez V, Dunn WB, Ebbels TMD, Giacomoni F, Gonzalez-Beltran A, Hankemeier T, Haug K, Izquierdo-Garcia JL, Jimenez RC, Jourdan F, Kale N, Klapa MI, Kohlbacher O, Koort K, Kultima K, Le Corguillé G, Moreno P, Moschonas NK, Neumann S, O'Donovan C, Reczko M, Rocca-Serra P, Rosato A, Salek RM, Sansone SA, Satagopam V, Schober D, Shimmo R, Spicer RA, Spjuth O, Thévenot EA, Viant MR, Weber RJM, Willighagen EL, Zanetti G, Steinbeck C.
PMID: 29043062
F1000Res. 2017 Sep 06;6. doi: 10.12688/f1000research.12342.2. eCollection 2017.

Metabolomics, the youngest of the major omics technologies, is supported by an active community of researchers and infrastructure developers across Europe. To coordinate and focus efforts around infrastructure building for metabolomics within Europe, a workshop on the "Future of...

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van Rijswijk M, Beirnaert C, Caron C, et al. The future of metabolomics in ELIXIR. F1000Res. 2017;6doi: 10.12688/f1000research.12342.2.
van Rijswijk, M., Beirnaert, C., Caron, C., Cascante, M., Dominguez, V., Dunn, W. B., Ebbels, T. M. D., Giacomoni, F., Gonzalez-Beltran, A., Hankemeier, T., Haug, K., Izquierdo-Garcia, J. L., Jimenez, R. C., Jourdan, F., Kale, N., Klapa, M. I., Kohlbacher, O., Koort, K., Kultima, K., Le Corguillé, G., Moreno, P., Moschonas, N. K., Neumann, S., O'Donovan, C., Reczko, M., Rocca-Serra, P., Rosato, A., Salek, R. M., Sansone, S. A., Satagopam, V., Schober, D., Shimmo, R., Spicer, R. A., Spjuth, O., Thévenot, E. A., Viant, M. R., Weber, R. J. M., Willighagen, E. L., Zanetti, G., & Steinbeck, C. (2017). The future of metabolomics in ELIXIR. F1000Research, 6. https://doi.org/10.12688/f1000research.12342.2
van Rijswijk, Merlijn, et al. "The future of metabolomics in ELIXIR." F1000Research vol. 6 (2017). doi: https://doi.org/10.12688/f1000research.12342.2
van Rijswijk M, Beirnaert C, Caron C, Cascante M, Dominguez V, Dunn WB, Ebbels TMD, Giacomoni F, Gonzalez-Beltran A, Hankemeier T, Haug K, Izquierdo-Garcia JL, Jimenez RC, Jourdan F, Kale N, Klapa MI, Kohlbacher O, Koort K, Kultima K, Le Corguillé G, Moreno P, Moschonas NK, Neumann S, O'Donovan C, Reczko M, Rocca-Serra P, Rosato A, Salek RM, Sansone SA, Satagopam V, Schober D, Shimmo R, Spicer RA, Spjuth O, Thévenot EA, Viant MR, Weber RJM, Willighagen EL, Zanetti G, Steinbeck C. The future of metabolomics in ELIXIR. F1000Res. 2017 Sep 06;6. doi: 10.12688/f1000research.12342.2. eCollection 2017. PMID: 29043062; PMCID: PMC5627583.
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Relationship between cerebral aneurysm wall stiffness and rupture risk.

Computer methods in biomechanics and biomedical engineering

Brunel H, Ambard D, Dufour H, Roche PH, Costalat V, Jourdan F.
PMID: 29088633
Comput Methods Biomech Biomed Engin. 2017 Oct;20:33-34. doi: 10.1080/10255842.2017.1382847.

No abstract available.

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Brunel H, Ambard D, Dufour H, et al. Relationship between cerebral aneurysm wall stiffness and rupture risk. Comput Methods Biomech Biomed Engin. 2017;20:33-34doi: 10.1080/10255842.2017.1382847.
Brunel, H., Ambard, D., Dufour, H., Roche, P. H., Costalat, V., & Jourdan, F. (2017). Relationship between cerebral aneurysm wall stiffness and rupture risk. Computer methods in biomechanics and biomedical engineering, 2033-34. https://doi.org/10.1080/10255842.2017.1382847
Brunel, H, et al. "Relationship between cerebral aneurysm wall stiffness and rupture risk." Computer methods in biomechanics and biomedical engineering vol. 20 (2017): 33-34. doi: https://doi.org/10.1080/10255842.2017.1382847
Brunel H, Ambard D, Dufour H, Roche PH, Costalat V, Jourdan F. Relationship between cerebral aneurysm wall stiffness and rupture risk. Comput Methods Biomech Biomed Engin. 2017 Oct;20:33-34. doi: 10.1080/10255842.2017.1382847. PMID: 29088633.
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Transformed callus does not necessarily regenerate transformed shoots.

Plant cell reports

Jordan MC, McHughen A.
PMID: 24241768
Plant Cell Rep. 1988 Jun;7(4):285-7. doi: 10.1007/BF00272544.

Agrobacterium tumefaciens carrying a disarmed Ti plasmid vector was used for the transformation of flax tissue. Transformed callus was obtained from inoculated hypocotyl segments and healthy green shoots were regenerated from this callus. Nopaline assays on shoot tissue were...

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Jordan MC, McHughen A. Transformed callus does not necessarily regenerate transformed shoots. Plant Cell Rep. 1988;7(4):285-7doi: 10.1007/BF00272544.
Jordan, M. C., & McHughen, A. (1988). Transformed callus does not necessarily regenerate transformed shoots. Plant cell reports, 7(4), 285-7. https://doi.org/10.1007/BF00272544
Jordan, M C, and McHughen, A. "Transformed callus does not necessarily regenerate transformed shoots." Plant cell reports vol. 7,4 (1988): 285-7. doi: https://doi.org/10.1007/BF00272544
Jordan MC, McHughen A. Transformed callus does not necessarily regenerate transformed shoots. Plant Cell Rep. 1988 Jun;7(4):285-7. doi: 10.1007/BF00272544. PMID: 24241768.
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Pre-Miocene birth of the Yangtze River.

Proceedings of the National Academy of Sciences of the United States of America

Zheng H, Clift PD, Wang P, Tada R, Jia J, He M, Jourdan F.
PMID: 23610418
Proc Natl Acad Sci U S A. 2013 May 07;110(19):7556-61. doi: 10.1073/pnas.1216241110. Epub 2013 Apr 22.

The development of fluvial systems in East Asia is closely linked to the evolving topography following India-Eurasia collision. Despite this, the age of the Yangtze River system has been strongly debated, with estimates ranging from 40 to 45 Ma,...

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Zheng H, Clift PD, Wang P, et al. Pre-Miocene birth of the Yangtze River. Proc Natl Acad Sci U S A. 2013;110(19):7556-61doi: 10.1073/pnas.1216241110.
Zheng, H., Clift, P. D., Wang, P., Tada, R., Jia, J., He, M., & Jourdan, F. (2013). Pre-Miocene birth of the Yangtze River. Proceedings of the National Academy of Sciences of the United States of America, 110(19), 7556-61. https://doi.org/10.1073/pnas.1216241110
Zheng, Hongbo, et al. "Pre-Miocene birth of the Yangtze River." Proceedings of the National Academy of Sciences of the United States of America vol. 110,19 (2013): 7556-61. doi: https://doi.org/10.1073/pnas.1216241110
Zheng H, Clift PD, Wang P, Tada R, Jia J, He M, Jourdan F. Pre-Miocene birth of the Yangtze River. Proc Natl Acad Sci U S A. 2013 May 07;110(19):7556-61. doi: 10.1073/pnas.1216241110. Epub 2013 Apr 22. PMID: 23610418; PMCID: PMC3651491.
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A case of periampullary adenocarcinoma in neurofibromatosis type 1.

Journal of gastrointestinal oncology

Kistler CA, Johnson JM, Winter JM, Baliff JP, Siddiqui AA, Sama AR.
PMID: 25436139
J Gastrointest Oncol. 2014 Dec;5(6):E96-9. doi: 10.3978/j.issn.2078-6891.2014.047.

Neurofibromatosis type 1 (NF-1) is an autosomal dominant genetic disorder with a known predisposition to gastrointestinal neoplasms such as stromal tumors and carcinoids. Adenocarcinomas (ACs) of the gastrointestinal tract are relatively rare in patients with NF-1, especially those found...

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Kistler CA, Johnson JM, Winter JM, et al. A case of periampullary adenocarcinoma in neurofibromatosis type 1. J Gastrointest Oncol. 2014;5(6):E96-9doi: 10.3978/j.issn.2078-6891.2014.047.
Kistler, C. A., Johnson, J. M., Winter, J. M., Baliff, J. P., Siddiqui, A. A., & Sama, A. R. (2014). A case of periampullary adenocarcinoma in neurofibromatosis type 1. Journal of gastrointestinal oncology, 5(6), E96-9. https://doi.org/10.3978/j.issn.2078-6891.2014.047
Kistler, C Andrew, et al. "A case of periampullary adenocarcinoma in neurofibromatosis type 1." Journal of gastrointestinal oncology vol. 5,6 (2014): E96-9. doi: https://doi.org/10.3978/j.issn.2078-6891.2014.047
Kistler CA, Johnson JM, Winter JM, Baliff JP, Siddiqui AA, Sama AR. A case of periampullary adenocarcinoma in neurofibromatosis type 1. J Gastrointest Oncol. 2014 Dec;5(6):E96-9. doi: 10.3978/j.issn.2078-6891.2014.047. PMID: 25436139; PMCID: PMC4226813.
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Reorganization and stability for motor and language areas using cortical stimulation: case example and review of the literature.

Brain sciences

Serafini S, Komisarow JM, Gallentine W, Mikati MA, Bonner MJ, Kranz PG, Haglund MM, Grant G.
PMID: 24961623
Brain Sci. 2013 Nov 26;3(4):1597-614. doi: 10.3390/brainsci3041597.

The cerebral organization of language in epilepsy patients has been studied with invasive procedures such as Wada testing and electrical cortical stimulation mapping and more recently with noninvasive neuroimaging techniques, such as functional MRI. In the setting of a...

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Serafini S, Komisarow JM, Gallentine W, et al. Reorganization and stability for motor and language areas using cortical stimulation: case example and review of the literature. Brain Sci. 2013;3(4):1597-614doi: 10.3390/brainsci3041597.
Serafini, S., Komisarow, J. M., Gallentine, W., Mikati, M. A., Bonner, M. J., Kranz, P. G., Haglund, M. M., & Grant, G. (2013). Reorganization and stability for motor and language areas using cortical stimulation: case example and review of the literature. Brain sciences, 3(4), 1597-614. https://doi.org/10.3390/brainsci3041597
Serafini, Sandra, et al. "Reorganization and stability for motor and language areas using cortical stimulation: case example and review of the literature." Brain sciences vol. 3,4 (2013): 1597-614. doi: https://doi.org/10.3390/brainsci3041597
Serafini S, Komisarow JM, Gallentine W, Mikati MA, Bonner MJ, Kranz PG, Haglund MM, Grant G. Reorganization and stability for motor and language areas using cortical stimulation: case example and review of the literature. Brain Sci. 2013 Nov 26;3(4):1597-614. doi: 10.3390/brainsci3041597. PMID: 24961623; PMCID: PMC4061887.
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