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Accelerating Scientific Discovery Through Computation and Visualization.

Journal of research of the National Institute of Standards and Technology

Sims JS, Hagedorn JG, Ketcham PM, Satterfield SG, Griffin TJ, George WL, Fowler HA, Am Ende BA, Hung HK, Bohn RB, Koontz JE, Martys NS, Bouldin CE, Warren JA, Feder DL, Clark CW, Filla BJ, Devaney JE.
PMID: 27551642
J Res Natl Inst Stand Technol. 2000 Dec 01;105(6):875-94. doi: 10.6028/jres.105.068. Print 2000.

The rate of scientific discovery can be accelerated through computation and visualization. This acceleration results from the synergy of expertise, computing tools, and hardware for enabling high-performance computation, information science, and visualization that is provided by a team of...

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Sims JS, Hagedorn JG, Ketcham PM, et al. Accelerating Scientific Discovery Through Computation and Visualization. J Res Natl Inst Stand Technol. 2000;105(6):875-94doi: 10.6028/jres.105.068.
Sims, J. S., Hagedorn, J. G., Ketcham, P. M., Satterfield, S. G., Griffin, T. J., George, W. L., Fowler, H. A., Am Ende, B. A., Hung, H. K., Bohn, R. B., Koontz, J. E., Martys, N. S., Bouldin, C. E., Warren, J. A., Feder, D. L., Clark, C. W., Filla, B. J., & Devaney, J. E. (2000). Accelerating Scientific Discovery Through Computation and Visualization. Journal of research of the National Institute of Standards and Technology, 105(6), 875-94. https://doi.org/10.6028/jres.105.068
Sims, J S, et al. "Accelerating Scientific Discovery Through Computation and Visualization." Journal of research of the National Institute of Standards and Technology vol. 105,6 (2000): 875-94. doi: https://doi.org/10.6028/jres.105.068
Sims JS, Hagedorn JG, Ketcham PM, Satterfield SG, Griffin TJ, George WL, Fowler HA, Am Ende BA, Hung HK, Bohn RB, Koontz JE, Martys NS, Bouldin CE, Warren JA, Feder DL, Clark CW, Filla BJ, Devaney JE. Accelerating Scientific Discovery Through Computation and Visualization. J Res Natl Inst Stand Technol. 2000 Dec 01;105(6):875-94. doi: 10.6028/jres.105.068. Print 2000. PMID: 27551642; PMCID: PMC4877149.
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Accelerating Scientific Discovery Through Computation and Visualization II.

Journal of research of the National Institute of Standards and Technology

Sims JS, George WL, Satterfield SG, Hung HK, Hagedorn JG, Ketcham PM, Griffin TJ, Hagstrom SA, Franiatte JC, Bryant GW, Jaskólski W, Martys NS, Bouldin CE, Simmons V, Nicolas OP, Warren JA, Am Ende BA, Koontz JE, Filla BJ, Pourprix VG, Copley SR, Bohn RB, Peskin AP, Parker YM, Devaney JE.
PMID: 27446728
J Res Natl Inst Stand Technol. 2002 Jun 01;107(3):223-45. doi: 10.6028/jres.107.019. Print 2002.

This is the second in a series of articles describing a wide variety of projects at NIST that synergistically combine physical science and information science. It describes, through examples, how the Scientific Applications and Visualization Group (SAVG) at NIST...

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Sims JS, George WL, Satterfield SG, et al. Accelerating Scientific Discovery Through Computation and Visualization II. J Res Natl Inst Stand Technol. 2002;107(3):223-45doi: 10.6028/jres.107.019.
Sims, J. S., George, W. L., Satterfield, S. G., Hung, H. K., Hagedorn, J. G., Ketcham, P. M., Griffin, T. J., Hagstrom, S. A., Franiatte, J. C., Bryant, G. W., Jaskólski, W., Martys, N. S., Bouldin, C. E., Simmons, V., Nicolas, O. P., Warren, J. A., Am Ende, B. A., Koontz, J. E., Filla, B. J., Pourprix, V. G., Copley, S. R., Bohn, R. B., Peskin, A. P., Parker, Y. M., & Devaney, J. E. (2002). Accelerating Scientific Discovery Through Computation and Visualization II. Journal of research of the National Institute of Standards and Technology, 107(3), 223-45. https://doi.org/10.6028/jres.107.019
Sims, James S, et al. "Accelerating Scientific Discovery Through Computation and Visualization II." Journal of research of the National Institute of Standards and Technology vol. 107,3 (2002): 223-45. doi: https://doi.org/10.6028/jres.107.019
Sims JS, George WL, Satterfield SG, Hung HK, Hagedorn JG, Ketcham PM, Griffin TJ, Hagstrom SA, Franiatte JC, Bryant GW, Jaskólski W, Martys NS, Bouldin CE, Simmons V, Nicolas OP, Warren JA, Am Ende BA, Koontz JE, Filla BJ, Pourprix VG, Copley SR, Bohn RB, Peskin AP, Parker YM, Devaney JE. Accelerating Scientific Discovery Through Computation and Visualization II. J Res Natl Inst Stand Technol. 2002 Jun 01;107(3):223-45. doi: 10.6028/jres.107.019. Print 2002. PMID: 27446728; PMCID: PMC4861354.
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Doctors as ambassadors.

Military medicine

KOONTZ AR.
PMID: 13503709
Mil Med. 1958 Feb;122(2):106-7.

No abstract available.

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KOONTZ AR. Doctors as ambassadors. Mil Med. 1958;122(2):106-7
KOONTZ, A. R. (1958). Doctors as ambassadors. Military medicine, 122(2), 106-7.
KOONTZ, A R. "Doctors as ambassadors." Military medicine vol. 122,2 (1958): 106-7.
KOONTZ AR. Doctors as ambassadors. Mil Med. 1958 Feb;122(2):106-7. PMID: 13503709.
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THE ENGLISH LANGUAGE--AS DOCTORS SPEAK IT.

Military medicine

KOONTZ AR.
PMID: 14169240
Mil Med. 1964 Apr;129:369-71.

No abstract available.

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KOONTZ AR. THE ENGLISH LANGUAGE--AS DOCTORS SPEAK IT. Mil Med. 1964;129:369-71
KOONTZ, A. R. (1964). THE ENGLISH LANGUAGE--AS DOCTORS SPEAK IT. Military medicine, 129369-71.
KOONTZ, A R. "THE ENGLISH LANGUAGE--AS DOCTORS SPEAK IT." Military medicine vol. 129 (1964): 369-71.
KOONTZ AR. THE ENGLISH LANGUAGE--AS DOCTORS SPEAK IT. Mil Med. 1964 Apr;129:369-71. PMID: 14169240.
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Silver uptake, distribution, and effect on calcium, phosphorus, and sulfur uptake.

Plant physiology

Koontz HV, Berle KL.
PMID: 16661185
Plant Physiol. 1980 Feb;65(2):336-9. doi: 10.1104/pp.65.2.336.

Bean, corn, and tomato plants were grown in a nutrient solution labeled with (32)P, (45)Ca, or (35)S and varying concentrations of AgNO(3). Following a 6-hour treatment period, plants were harvested and analyzed. A low Ag(+) concentration (50 nanomolar) inhibited...

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Koontz HV, Berle KL. Silver uptake, distribution, and effect on calcium, phosphorus, and sulfur uptake. Plant Physiol. 1980;65(2):336-9doi: 10.1104/pp.65.2.336.
Koontz, H. V., & Berle, K. L. (1980). Silver uptake, distribution, and effect on calcium, phosphorus, and sulfur uptake. Plant physiology, 65(2), 336-9. https://doi.org/10.1104/pp.65.2.336
Koontz, H V, and Berle, K L. "Silver uptake, distribution, and effect on calcium, phosphorus, and sulfur uptake." Plant physiology vol. 65,2 (1980): 336-9. doi: https://doi.org/10.1104/pp.65.2.336
Koontz HV, Berle KL. Silver uptake, distribution, and effect on calcium, phosphorus, and sulfur uptake. Plant Physiol. 1980 Feb;65(2):336-9. doi: 10.1104/pp.65.2.336. PMID: 16661185; PMCID: PMC440322.
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Demographic profile of older adults using wheeled mobility devices.

Journal of aging research

Karmarkar AM, Dicianno BE, Cooper R, Collins DM, Matthews JT, Koontz A, Teodorski EE, Cooper RA.
PMID: 21748007
J Aging Res. 2011;2011:560358. doi: 10.4061/2011/560358. Epub 2011 Jun 14.

The purpose of this study was to determine whether the use of wheeled mobility devices differed with respect to age, gender, residential setting, and health-related factors among older adults. A total of 723 adults ageing 60 and older are...

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Karmarkar AM, Dicianno BE, Cooper R, et al. Demographic profile of older adults using wheeled mobility devices. J Aging Res. 2011;2011:560358doi: 10.4061/2011/560358.
Karmarkar, A. M., Dicianno, B. E., Cooper, R., Collins, D. M., Matthews, J. T., Koontz, A., Teodorski, E. E., & Cooper, R. A. (2011). Demographic profile of older adults using wheeled mobility devices. Journal of aging research, 2011560358. https://doi.org/10.4061/2011/560358
Karmarkar, Amol M, et al. "Demographic profile of older adults using wheeled mobility devices." Journal of aging research vol. 2011 (2011): 560358. doi: https://doi.org/10.4061/2011/560358
Karmarkar AM, Dicianno BE, Cooper R, Collins DM, Matthews JT, Koontz A, Teodorski EE, Cooper RA. Demographic profile of older adults using wheeled mobility devices. J Aging Res. 2011;2011:560358. doi: 10.4061/2011/560358. Epub 2011 Jun 14. PMID: 21748007; PMCID: PMC3124894.
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Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment.

Ecology and evolution

Koontz MJ, Oldfather MF, Melbourne BA, Hufbauer RA.
PMID: 30250683
Ecol Evol. 2018 Jul 20;8(16):8043-8054. doi: 10.1002/ece3.4226. eCollection 2018 Aug.

Predicting whether individuals will colonize a novel habitat is of fundamental ecological interest and is crucial to conservation efforts. A consistently supported predictor of colonization success is the number of individuals introduced, also called propagule pressure. Propagule pressure increases...

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Koontz MJ, Oldfather MF, Melbourne BA, et al. Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment. Ecol Evol. 2018;8(16):8043-8054doi: 10.1002/ece3.4226.
Koontz, M. J., Oldfather, M. F., Melbourne, B. A., & Hufbauer, R. A. (2018). Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment. Ecology and evolution, 8(16), 8043-8054. https://doi.org/10.1002/ece3.4226
Koontz, Michael J, et al. "Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment." Ecology and evolution vol. 8,16 (2018): 8043-8054. doi: https://doi.org/10.1002/ece3.4226
Koontz MJ, Oldfather MF, Melbourne BA, Hufbauer RA. Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment. Ecol Evol. 2018 Jul 20;8(16):8043-8054. doi: 10.1002/ece3.4226. eCollection 2018 Aug. PMID: 30250683; PMCID: PMC6145030.
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Hypofractionated Radiation Therapy for Localized Prostate Cancer: An ASTRO, ASCO, and AUA Evidence-Based Guideline.

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

Morgan SC, Hoffman K, Loblaw DA, Buyyounouski MK, Patton C, Barocas D, Bentzen S, Chang M, Efstathiou J, Greany P, Halvorsen P, Koontz BF, Lawton C, Leyrer CM, Lin D, Ray M, Sandler H.
PMID: 30307776
J Clin Oncol. 2018 Oct 11;JCO1801097. doi: 10.1200/JCO.18.01097. Epub 2018 Oct 11.

No abstract available.

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Morgan SC, Hoffman K, Loblaw DA, et al. Hypofractionated Radiation Therapy for Localized Prostate Cancer: An ASTRO, ASCO, and AUA Evidence-Based Guideline. J Clin Oncol. 2018;JCO1801097doi: 10.1200/JCO.18.01097.
Morgan, S. C., Hoffman, K., Loblaw, D. A., Buyyounouski, M. K., Patton, C., Barocas, D., Bentzen, S., Chang, M., Efstathiou, J., Greany, P., Halvorsen, P., Koontz, B. F., Lawton, C., Leyrer, C. M., Lin, D., Ray, M., & Sandler, H. (2018). Hypofractionated Radiation Therapy for Localized Prostate Cancer: An ASTRO, ASCO, and AUA Evidence-Based Guideline. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, JCO1801097. https://doi.org/10.1200/JCO.18.01097
Morgan, Scott C, et al. "Hypofractionated Radiation Therapy for Localized Prostate Cancer: An ASTRO, ASCO, and AUA Evidence-Based Guideline." Journal of clinical oncology : official journal of the American Society of Clinical Oncology vol. (2018): JCO1801097. doi: https://doi.org/10.1200/JCO.18.01097
Morgan SC, Hoffman K, Loblaw DA, Buyyounouski MK, Patton C, Barocas D, Bentzen S, Chang M, Efstathiou J, Greany P, Halvorsen P, Koontz BF, Lawton C, Leyrer CM, Lin D, Ray M, Sandler H. Hypofractionated Radiation Therapy for Localized Prostate Cancer: An ASTRO, ASCO, and AUA Evidence-Based Guideline. J Clin Oncol. 2018 Oct 11;JCO1801097. doi: 10.1200/JCO.18.01097. Epub 2018 Oct 11. PMID: 30307776; PMCID: PMC6269129.
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Enhancing Survivorship Care Planning for Patients With Localized Prostate Cancer Using a Couple-Focused mHealth Symptom Self-Management Program: Protocol for a Feasibility Study.

JMIR research protocols

Song L, Dunlap KL, Tan X, Chen RC, Nielsen ME, Rabenberg RL, Asafu-Adjei JK, Koontz BF, Birken SA, Northouse LL, Mayer DK.
PMID: 29483070
JMIR Res Protoc. 2018 Feb 26;7(2):e51. doi: 10.2196/resprot.9118.

BACKGROUND: This project explores a new model of care that enhances survivorship care planning and promotes health for men with localized prostate cancer transitioning to posttreatment self-management. Survivorship care planning is important for patients with prostate cancer because of...

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Song L, Dunlap KL, Tan X, et al. Enhancing Survivorship Care Planning for Patients With Localized Prostate Cancer Using a Couple-Focused mHealth Symptom Self-Management Program: Protocol for a Feasibility Study. JMIR Res Protoc. 2018;7(2):e51doi: 10.2196/resprot.9118.
Song, L., Dunlap, K. L., Tan, X., Chen, R. C., Nielsen, M. E., Rabenberg, R. L., Asafu-Adjei, J. K., Koontz, B. F., Birken, S. A., Northouse, L. L., & Mayer, D. K. (2018). Enhancing Survivorship Care Planning for Patients With Localized Prostate Cancer Using a Couple-Focused mHealth Symptom Self-Management Program: Protocol for a Feasibility Study. JMIR research protocols, 7(2), e51. https://doi.org/10.2196/resprot.9118
Song, Lixin, et al. "Enhancing Survivorship Care Planning for Patients With Localized Prostate Cancer Using a Couple-Focused mHealth Symptom Self-Management Program: Protocol for a Feasibility Study." JMIR research protocols vol. 7,2 (2018): e51. doi: https://doi.org/10.2196/resprot.9118
Song L, Dunlap KL, Tan X, Chen RC, Nielsen ME, Rabenberg RL, Asafu-Adjei JK, Koontz BF, Birken SA, Northouse LL, Mayer DK. Enhancing Survivorship Care Planning for Patients With Localized Prostate Cancer Using a Couple-Focused mHealth Symptom Self-Management Program: Protocol for a Feasibility Study. JMIR Res Protoc. 2018 Feb 26;7(2):e51. doi: 10.2196/resprot.9118. PMID: 29483070; PMCID: PMC5847815.
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Patterns of chasmogamy and cleistogamy, a mixed-mating strategy in an endangered perennial.

AoB PLANTS

Koontz SM, Weekley CW, Haller Crate SJ, Menges ES.
PMID: 29308127
AoB Plants. 2017 Nov 07;9(6):plx059. doi: 10.1093/aobpla/plx059. eCollection 2017 Nov.

Cleistogamy (CL) in angiosperms historically has been understudied; however, its co-occurrence with chasmogamy (CH) across many plant species suggests a fitness advantage to maintaining this mixed-mating strategy. Maintenance of mixed-mating has been attributed to reproductive assurance, resource allocation or...

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Koontz SM, Weekley CW, Haller Crate SJ, et al. Patterns of chasmogamy and cleistogamy, a mixed-mating strategy in an endangered perennial. AoB Plants. 2017;9(6):plx059doi: 10.1093/aobpla/plx059.
Koontz, S. M., Weekley, C. W., Haller Crate, S. J., & Menges, E. S. (2017). Patterns of chasmogamy and cleistogamy, a mixed-mating strategy in an endangered perennial. AoB PLANTS, 9(6), plx059. https://doi.org/10.1093/aobpla/plx059
Koontz, Stephanie M, et al. "Patterns of chasmogamy and cleistogamy, a mixed-mating strategy in an endangered perennial." AoB PLANTS vol. 9,6 (2017): plx059. doi: https://doi.org/10.1093/aobpla/plx059
Koontz SM, Weekley CW, Haller Crate SJ, Menges ES. Patterns of chasmogamy and cleistogamy, a mixed-mating strategy in an endangered perennial. AoB Plants. 2017 Nov 07;9(6):plx059. doi: 10.1093/aobpla/plx059. eCollection 2017 Nov. PMID: 29308127; PMCID: PMC5751043.
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Contemporary Update of a Multi-Institutional Predictive Nomogram for Salvage Radiotherapy After Radical Prostatectomy.

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

Tendulkar RD, Agrawal S, Gao T, Efstathiou JA, Pisansky TM, Michalski JM, Koontz BF, Hamstra DA, Feng FY, Liauw SL, Abramowitz MC, Pollack A, Anscher MS, Moghanaki D, Den RB, Stephans KL, Zietman AL, Lee WR, Kattan MW, Stephenson AJ.
PMID: 27528718
J Clin Oncol. 2016 Oct 20;34(30):3648-3654. doi: 10.1200/JCO.2016.67.9647.

PURPOSE: We aimed to update a previously published, multi-institutional nomogram of outcomes for salvage radiotherapy (SRT) following radical prostatectomy (RP) for prostate cancer, including patients treated in the contemporary era.METHODS: Individual data from node-negative patients with a detectable post-RP...

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Tendulkar RD, Agrawal S, Gao T, et al. Contemporary Update of a Multi-Institutional Predictive Nomogram for Salvage Radiotherapy After Radical Prostatectomy. J Clin Oncol. 2016;34(30):3648-3654doi: 10.1200/JCO.2016.67.9647.
Tendulkar, R. D., Agrawal, S., Gao, T., Efstathiou, J. A., Pisansky, T. M., Michalski, J. M., Koontz, B. F., Hamstra, D. A., Feng, F. Y., Liauw, S. L., Abramowitz, M. C., Pollack, A., Anscher, M. S., Moghanaki, D., Den, R. B., Stephans, K. L., Zietman, A. L., Lee, W. R., Kattan, M. W., & Stephenson, A. J. (2016). Contemporary Update of a Multi-Institutional Predictive Nomogram for Salvage Radiotherapy After Radical Prostatectomy. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 34(30), 3648-3654. https://doi.org/10.1200/JCO.2016.67.9647
Tendulkar, Rahul D, et al. "Contemporary Update of a Multi-Institutional Predictive Nomogram for Salvage Radiotherapy After Radical Prostatectomy." Journal of clinical oncology : official journal of the American Society of Clinical Oncology vol. 34,30 (2016): 3648-3654. doi: https://doi.org/10.1200/JCO.2016.67.9647
Tendulkar RD, Agrawal S, Gao T, Efstathiou JA, Pisansky TM, Michalski JM, Koontz BF, Hamstra DA, Feng FY, Liauw SL, Abramowitz MC, Pollack A, Anscher MS, Moghanaki D, Den RB, Stephans KL, Zietman AL, Lee WR, Kattan MW, Stephenson AJ. Contemporary Update of a Multi-Institutional Predictive Nomogram for Salvage Radiotherapy After Radical Prostatectomy. J Clin Oncol. 2016 Oct 20;34(30):3648-3654. doi: 10.1200/JCO.2016.67.9647. PMID: 27528718.
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Chronic lymphocytic leukemia cells diversify and differentiate in vivo via a nonclassical Th1-dependent, Bcl-6-deficient process.

JCI insight

Patten PE, Ferrer G, Chen SS, Simone R, Marsilio S, Yan XJ, Gitto Z, Yuan C, Kolitz JE, Barrientos J, Allen SL, Rai KR, MacCarthy T, Chu CC, Chiorazzi N.
PMID: 27158669
JCI Insight. 2016 Apr 07;1(4). doi: 10.1172/jci.insight.86288.

Xenografting primary tumor cells allows modeling of the heterogeneous natures of malignant diseases and the influences of the tissue microenvironment. Here, we demonstrate that xenografting primary chronic lymphocytic leukemia (CLL) B lymphocytes with activated autologous T cells into alymphoid...

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Patten PE, Ferrer G, Chen SS, et al. Chronic lymphocytic leukemia cells diversify and differentiate in vivo via a nonclassical Th1-dependent, Bcl-6-deficient process. JCI Insight. 2016;1(4)doi: 10.1172/jci.insight.86288.
Patten, P. E., Ferrer, G., Chen, S. S., Simone, R., Marsilio, S., Yan, X. J., Gitto, Z., Yuan, C., Kolitz, J. E., Barrientos, J., Allen, S. L., Rai, K. R., MacCarthy, T., Chu, C. C., & Chiorazzi, N. (2016). Chronic lymphocytic leukemia cells diversify and differentiate in vivo via a nonclassical Th1-dependent, Bcl-6-deficient process. JCI insight, 1(4), . https://doi.org/10.1172/jci.insight.86288
Patten, Piers E M, et al. "Chronic lymphocytic leukemia cells diversify and differentiate in vivo via a nonclassical Th1-dependent, Bcl-6-deficient process." JCI insight vol. 1,4 (2016). doi: https://doi.org/10.1172/jci.insight.86288
Patten PE, Ferrer G, Chen SS, Simone R, Marsilio S, Yan XJ, Gitto Z, Yuan C, Kolitz JE, Barrientos J, Allen SL, Rai KR, MacCarthy T, Chu CC, Chiorazzi N. Chronic lymphocytic leukemia cells diversify and differentiate in vivo via a nonclassical Th1-dependent, Bcl-6-deficient process. JCI Insight. 2016 Apr 07;1(4). doi: 10.1172/jci.insight.86288. PMID: 27158669; PMCID: PMC4855875.
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Showing 1 to 12 of 113 entries