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Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883.

Genome announcements

Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL.
PMID: 25291763
Genome Announc. 2014 Sep 25;2(5). doi: 10.1128/genomeA.00939-14.

Klebsiella pneumoniae is a common cause of antibiotic-resistant bacterial infections in immunocompromised individuals. Here, we present the 5.54-Mb scaffolded assembly of the type strain K. pneumoniae type strain ATCC 13883, as deposited in GenBank under accession no. JOOW00000000.

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Daligault HE, Davenport KW, Minogue TD, et al. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome Announc. 2014;2(5)doi: 10.1128/genomeA.00939-14.
Daligault, H. E., Davenport, K. W., Minogue, T. D., Bishop-Lilly, K. A., Bruce, D. C., Chain, P. S., Coyne, S. R., Frey, K. G., Jaissle, J., Koroleva, G. I., Ladner, J. T., Lo, C. C., Meincke, L., Munk, A. C., Palacios, G. F., Redden, C. L., & Johnson, S. L. (2014). Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome announcements, 2(5), . https://doi.org/10.1128/genomeA.00939-14
Daligault, H E, et al. "Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883." Genome announcements vol. 2,5 (2014). doi: https://doi.org/10.1128/genomeA.00939-14
Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Meincke L, Munk AC, Palacios GF, Redden CL, Johnson SL. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. Genome Announc. 2014 Sep 25;2(5). doi: 10.1128/genomeA.00939-14. PMID: 25291763; PMCID: PMC4175198.
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Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.

Genome announcements

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.
PMID: 25931590
Genome Announc. 2015 Apr 30;3(2). doi: 10.1128/genomeA.00148-15.

The genus Yersinia includes three human pathogens, of which Yersinia pestis is responsible for >2,000 illnesses each year. To aid in the development of detection assays and aid further phylogenetic elucidation, we sequenced and assembled the complete genomes of...

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Johnson SL, Daligault HE, Davenport KW, et al. Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome Announc. 2015;3(2)doi: 10.1128/genomeA.00148-15.
Johnson, S. L., Daligault, H. E., Davenport, K. W., Jaissle, J., Frey, K. G., Ladner, J. T., Broomall, S. M., Bishop-Lilly, K. A., Bruce, D. C., Coyne, S. R., Gibbons, H. S., Lo, C. C., Munk, A. C., Rosenzweig, C. N., Koroleva, G. I., Palacios, G. F., Redden, C. L., Xu, Y., Minogue, T. D., & Chain, P. S. (2015). Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome announcements, 3(2), . https://doi.org/10.1128/genomeA.00148-15
Johnson, Shannon L, et al. "Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica." Genome announcements vol. 3,2 (2015). doi: https://doi.org/10.1128/genomeA.00148-15
Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS. Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. Genome Announc. 2015 Apr 30;3(2). doi: 10.1128/genomeA.00148-15. PMID: 25931590; PMCID: PMC4417686.
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The strong specific effect of coions on micellar growth from molecular-thermodynamic theory.

Physical chemistry chemical physics : PCCP

Koroleva SV, Victorov AI.
PMID: 25051396
Phys Chem Chem Phys. 2014 Sep 07;16(33):17422-5. doi: 10.1039/c4cp02178a.

Viscoelastic solutions of ionic surfactants with an added salt exhibit a surprisingly strong dependence of their behavior on the nature of the added coion. We apply a recently proposed molecular-thermodynamic model to elucidate the effect of a coion's specificity...

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Koroleva SV, Victorov AI. The strong specific effect of coions on micellar growth from molecular-thermodynamic theory. Phys Chem Chem Phys. 2014;16(33):17422-5doi: 10.1039/c4cp02178a.
Koroleva, S. V., & Victorov, A. I. (2014). The strong specific effect of coions on micellar growth from molecular-thermodynamic theory. Physical chemistry chemical physics : PCCP, 16(33), 17422-5. https://doi.org/10.1039/c4cp02178a
Koroleva, S V, and Victorov, A I. "The strong specific effect of coions on micellar growth from molecular-thermodynamic theory." Physical chemistry chemical physics : PCCP vol. 16,33 (2014): 17422-5. doi: https://doi.org/10.1039/c4cp02178a
Koroleva SV, Victorov AI. The strong specific effect of coions on micellar growth from molecular-thermodynamic theory. Phys Chem Chem Phys. 2014 Sep 07;16(33):17422-5. doi: 10.1039/c4cp02178a. PMID: 25051396.
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Human papillomavirus 16/18 types among young women from tula (Russia).

Journal of lower genital tract disease

Volkov VG, Zakharova TV, Koroleva LN.
PMID: 17051036
J Low Genit Tract Dis. 2003 Jan;7(1):3-5. doi: 10.1097/00128360-200301000-00002.

OBJECTIVE.: To study the prevalence of human papillomavirus 16/18 types among sexually active young women. STUDY DESIGN.: From October 1998 until May 1999 we examined 160 women between the ages of 15 and 24 (mean = 19.5 +/- 2.5)...

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Volkov VG, Zakharova TV, Koroleva LN. Human papillomavirus 16/18 types among young women from tula (Russia). J Low Genit Tract Dis. 2003;7(1):3-5doi: 10.1097/00128360-200301000-00002.
Volkov, V. G., Zakharova, T. V., & Koroleva, L. N. (2003). Human papillomavirus 16/18 types among young women from tula (Russia). Journal of lower genital tract disease, 7(1), 3-5. https://doi.org/10.1097/00128360-200301000-00002
Volkov, Valery G, et al. "Human papillomavirus 16/18 types among young women from tula (Russia)." Journal of lower genital tract disease vol. 7,1 (2003): 3-5. doi: https://doi.org/10.1097/00128360-200301000-00002
Volkov VG, Zakharova TV, Koroleva LN. Human papillomavirus 16/18 types among young women from tula (Russia). J Low Genit Tract Dis. 2003 Jan;7(1):3-5. doi: 10.1097/00128360-200301000-00002. PMID: 17051036.
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Percolation limit and stability conditions for the spin glass state in the spinel families based on the two matrices CuCr(2)S(4) and CuCr(2)Se(4) doped by Sb ions.

Journal of physics. Condensed matter : an Institute of Physics journal

Krok-Kowalski J, Warczewski J, Gusin P, Sliwińska T, Groń T, Urban G, Rduch P, Władarz G, Duda H, Malicka E, Pacyna A, Koroleva LI.
PMID: 21817279
J Phys Condens Matter. 2009 Jan 21;21(3):035402. doi: 10.1088/0953-8984/21/3/035402. Epub 2008 Dec 17.

The percolation limit of the appearance of the spin glass state in the compounds under study has been obtained experimentally. The conditions of stability of the spin glass state have been analyzed here on the basis of the de...

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Krok-Kowalski J, Warczewski J, Gusin P, et al. Percolation limit and stability conditions for the spin glass state in the spinel families based on the two matrices CuCr(2)S(4) and CuCr(2)Se(4) doped by Sb ions. J Phys Condens Matter. 2008;21(3):035402doi: 10.1088/0953-8984/21/3/035402.
Krok-Kowalski, J., Warczewski, J., Gusin, P., Sliwińska, T., Groń, T., Urban, G., Rduch, P., Władarz, G., Duda, H., Malicka, E., Pacyna, A., & Koroleva, L. I. (2009). Percolation limit and stability conditions for the spin glass state in the spinel families based on the two matrices CuCr(2)S(4) and CuCr(2)Se(4) doped by Sb ions. Journal of physics. Condensed matter : an Institute of Physics journal, 21(3), 035402. https://doi.org/10.1088/0953-8984/21/3/035402
Krok-Kowalski, J, et al. "Percolation limit and stability conditions for the spin glass state in the spinel families based on the two matrices CuCr(2)S(4) and CuCr(2)Se(4) doped by Sb ions." Journal of physics. Condensed matter : an Institute of Physics journal vol. 21,3 (2009): 035402. doi: https://doi.org/10.1088/0953-8984/21/3/035402
Krok-Kowalski J, Warczewski J, Gusin P, Sliwińska T, Groń T, Urban G, Rduch P, Władarz G, Duda H, Malicka E, Pacyna A, Koroleva LI. Percolation limit and stability conditions for the spin glass state in the spinel families based on the two matrices CuCr(2)S(4) and CuCr(2)Se(4) doped by Sb ions. J Phys Condens Matter. 2009 Jan 21;21(3):035402. doi: 10.1088/0953-8984/21/3/035402. Epub 2008 Dec 17. PMID: 21817279.
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Multicomponent synthesis of artificial nucleases and their RNase and DNase activity.

Beilstein journal of organic chemistry

Gulevich AV, Koroleva LS, Morozova OV, Bakhvalova VN, Silnikov VN, Nenajdenko VG.
PMID: 21915218
Beilstein J Org Chem. 2011;7:1135-40. doi: 10.3762/bjoc.7.131. Epub 2011 Aug 19.

The synthesis of new, artificial ribonucleases containing two amino acid residues connected by an aliphatic linker has been developed. Target molecules were synthesized via a catalytic three-component Ugi reaction from aliphatic diisocyanides. Preliminary investigations proved unspecific nuclease activity of...

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Gulevich AV, Koroleva LS, Morozova OV, et al. Multicomponent synthesis of artificial nucleases and their RNase and DNase activity. Beilstein J Org Chem. 2011;7:1135-40doi: 10.3762/bjoc.7.131.
Gulevich, A. V., Koroleva, L. S., Morozova, O. V., Bakhvalova, V. N., Silnikov, V. N., & Nenajdenko, V. G. (2011). Multicomponent synthesis of artificial nucleases and their RNase and DNase activity. Beilstein journal of organic chemistry, 71135-40. https://doi.org/10.3762/bjoc.7.131
Gulevich, Anton V, et al. "Multicomponent synthesis of artificial nucleases and their RNase and DNase activity." Beilstein journal of organic chemistry vol. 7 (2011): 1135-40. doi: https://doi.org/10.3762/bjoc.7.131
Gulevich AV, Koroleva LS, Morozova OV, Bakhvalova VN, Silnikov VN, Nenajdenko VG. Multicomponent synthesis of artificial nucleases and their RNase and DNase activity. Beilstein J Org Chem. 2011;7:1135-40. doi: 10.3762/bjoc.7.131. Epub 2011 Aug 19. PMID: 21915218; PMCID: PMC3170195.
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Whole-genome sequences of nine francisella isolates.

Genome announcements

Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL.
PMID: 25291764
Genome Announc. 2014 Sep 25;2(5). doi: 10.1128/genomeA.00941-14.

Primarily a zoonotic disease, Francisella tularensis is a fastidious intracellular pathogen and is listed as a CDC category A pathogen with notably high pathogenicity. Here we present the scaffolded genome assemblies of nine Francisella strains: eight F. tularensis and...

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Davenport KW, Daligault HE, Minogue TD, et al. Whole-genome sequences of nine francisella isolates. Genome Announc. 2014;2(5)doi: 10.1128/genomeA.00941-14.
Davenport, K. W., Daligault, H. E., Minogue, T. D., Bishop-Lilly, K. A., Broomall, S. M., Bruce, D. C., Chain, P. S., Coyne, S. R., Frey, K. G., Gibbons, H. S., Jaissle, J., Koroleva, G. I., Ladner, J. T., Palacios, G. F., Redden, C. L., Rosenzweig, C. N., Scholz, M. B., Teshima, H., & Johnson, S. L. (2014). Whole-genome sequences of nine francisella isolates. Genome announcements, 2(5), . https://doi.org/10.1128/genomeA.00941-14
Davenport, K W, et al. "Whole-genome sequences of nine francisella isolates." Genome announcements vol. 2,5 (2014). doi: https://doi.org/10.1128/genomeA.00941-14
Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Teshima H, Johnson SL. Whole-genome sequences of nine francisella isolates. Genome Announc. 2014 Sep 25;2(5). doi: 10.1128/genomeA.00941-14. PMID: 25291764; PMCID: PMC4175199.
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Carbohydrates in individual cells of epidermis, mesophyll, and bundle sheath in barley leaves with changed export or photosynthetic rate .

Plant physiology

Deri Tomos A, Farrar JF, Koroleva OA, Pollock CJ.
PMID: 9847129
Plant Physiol. 1998 Dec;118(4):1525-32. doi: 10.1104/pp.118.4.1525.
Free PMC Article

Carbohydrate metabolism of barley (Hordeum vulgare) leaves induced to accumulate sucrose (Suc) and fructans was investigated at the single-cell level using single-cell sampling and analysis. Cooling of the root and shoot apical meristem of barley plants led to the...

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Deri Tomos A, Farrar JF, Koroleva OA, et al. Carbohydrates in individual cells of epidermis, mesophyll, and bundle sheath in barley leaves with changed export or photosynthetic rate . Plant Physiol. 1998;118(4):1525-32doi: 10.1104/pp.118.4.1525.
Deri Tomos A, Farrar, J. F., Koroleva, O. A., & Pollock, C. J. (1998). Carbohydrates in individual cells of epidermis, mesophyll, and bundle sheath in barley leaves with changed export or photosynthetic rate . Plant physiology, 118(4), 1525-32. https://doi.org/10.1104/pp.118.4.1525
Deri Tomos A, et al. "Carbohydrates in individual cells of epidermis, mesophyll, and bundle sheath in barley leaves with changed export or photosynthetic rate ." Plant physiology vol. 118,4 (1998): 1525-32. doi: https://doi.org/10.1104/pp.118.4.1525
Deri Tomos A, Farrar JF, Koroleva OA, Pollock CJ. Carbohydrates in individual cells of epidermis, mesophyll, and bundle sheath in barley leaves with changed export or photosynthetic rate . Plant Physiol. 1998 Dec;118(4):1525-32. doi: 10.1104/pp.118.4.1525. PMID: 9847129; PMCID: PMC34771.
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Long-time relaxation of the dielectric response in lead magnoniobate.

Physical review letters

Colla EV, Koroleva EY, Okuneva NM, Vakhrushev SB.
PMID: 10059090
Phys Rev Lett. 1995 Feb 27;74(9):1681-1684. doi: 10.1103/PhysRevLett.74.1681.

No abstract available.

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Colla EV, Koroleva EY, Okuneva NM, et al. Long-time relaxation of the dielectric response in lead magnoniobate. Phys Rev Lett. 1995;74(9):1681-1684doi: 10.1103/PhysRevLett.74.1681.
Colla, E. V., Koroleva, E. Y., Okuneva, N. M., & Vakhrushev, S. B. (1995). Long-time relaxation of the dielectric response in lead magnoniobate. Physical review letters, 74(9), 1681-1684. https://doi.org/10.1103/PhysRevLett.74.1681
Colla, et al. "Long-time relaxation of the dielectric response in lead magnoniobate." Physical review letters vol. 74,9 (1995): 1681-1684. doi: https://doi.org/10.1103/PhysRevLett.74.1681
Colla EV, Koroleva EY, Okuneva NM, Vakhrushev SB. Long-time relaxation of the dielectric response in lead magnoniobate. Phys Rev Lett. 1995 Feb 27;74(9):1681-1684. doi: 10.1103/PhysRevLett.74.1681. PMID: 10059090.
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Anharmonic vibrational analysis of s-trans and s-cis conformers of acryloyl fluoride using numerical-analytic Van Vleck operator perturbation theory.

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy

Krasnoshchekov SV, Craig NC, Koroleva LA, Stepanov NF.
PMID: 28800431
Spectrochim Acta A Mol Biomol Spectrosc. 2018 Jan 15;189:66-79. doi: 10.1016/j.saa.2017.07.062. Epub 2017 Aug 01.

A new gas-phase infrared (IR) spectrum of acryloyl fluoride (ACRF, CH

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Krasnoshchekov SV, Craig NC, Koroleva LA, et al. Anharmonic vibrational analysis of s-trans and s-cis conformers of acryloyl fluoride using numerical-analytic Van Vleck operator perturbation theory. Spectrochim Acta A Mol Biomol Spectrosc. 2017;189:66-79doi: 10.1016/j.saa.2017.07.062.
Krasnoshchekov, S. V., Craig, N. C., Koroleva, L. A., & Stepanov, N. F. (2018). Anharmonic vibrational analysis of s-trans and s-cis conformers of acryloyl fluoride using numerical-analytic Van Vleck operator perturbation theory. Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy, 18966-79. https://doi.org/10.1016/j.saa.2017.07.062
Krasnoshchekov, Sergey V, et al. "Anharmonic vibrational analysis of s-trans and s-cis conformers of acryloyl fluoride using numerical-analytic Van Vleck operator perturbation theory." Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy vol. 189 (2018): 66-79. doi: https://doi.org/10.1016/j.saa.2017.07.062
Krasnoshchekov SV, Craig NC, Koroleva LA, Stepanov NF. Anharmonic vibrational analysis of s-trans and s-cis conformers of acryloyl fluoride using numerical-analytic Van Vleck operator perturbation theory. Spectrochim Acta A Mol Biomol Spectrosc. 2018 Jan 15;189:66-79. doi: 10.1016/j.saa.2017.07.062. Epub 2017 Aug 01. PMID: 28800431.
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Evolution of Antibiotic Resistance in Surrogates of .

Frontiers in microbiology

Biot FV, Bachert BA, Mlynek KD, Toothman RG, Koroleva GI, Lovett SP, Klimko CP, Palacios GF, Cote CK, Ladner JT, Bozue JA.
PMID: 33193267
Front Microbiol. 2020 Oct 30;11:593542. doi: 10.3389/fmicb.2020.593542. eCollection 2020.

No abstract available.

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Biot FV, Bachert BA, Mlynek KD, et al. Evolution of Antibiotic Resistance in Surrogates of . Front Microbiol. 2020;11:593542doi: 10.3389/fmicb.2020.593542.
Biot, F. V., Bachert, B. A., Mlynek, K. D., Toothman, R. G., Koroleva, G. I., Lovett, S. P., Klimko, C. P., Palacios, G. F., Cote, C. K., Ladner, J. T., & Bozue, J. A. (2020). Evolution of Antibiotic Resistance in Surrogates of . Frontiers in microbiology, 11593542. https://doi.org/10.3389/fmicb.2020.593542
Biot, Fabrice V, et al. "Evolution of Antibiotic Resistance in Surrogates of ." Frontiers in microbiology vol. 11 (2020): 593542. doi: https://doi.org/10.3389/fmicb.2020.593542
Biot FV, Bachert BA, Mlynek KD, Toothman RG, Koroleva GI, Lovett SP, Klimko CP, Palacios GF, Cote CK, Ladner JT, Bozue JA. Evolution of Antibiotic Resistance in Surrogates of . Front Microbiol. 2020 Oct 30;11:593542. doi: 10.3389/fmicb.2020.593542. eCollection 2020. PMID: 33193267; PMCID: PMC7661474.
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Novel Ni-Doped Bismuth-Magnesium Tantalate Pyrochlores: Structural and Electrical Properties, Thermal Expansion, X-ray Photoelectron Spectroscopy, and Near-Edge X-ray Absorption Fine Structure Spectra.

ACS omega

Zhuk NA, Krzhizhanovskaya MG, Sekushin NA, Kharton VV, Koroleva AV, Nekipelov SV, Sivkov DV, Sivkov VN, Makeev BA, Lebedev AM, Chumakov RG, Kovalenko SY.
PMID: 34549126
ACS Omega. 2021 Aug 30;6(36):23262-23273. doi: 10.1021/acsomega.1c02969. eCollection 2021 Sep 14.

The samples of Ni-doped bismuth magnesium tantalate pyrochlores with the general formula Bi

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Zhuk NA, Krzhizhanovskaya MG, Sekushin NA, et al. Novel Ni-Doped Bismuth-Magnesium Tantalate Pyrochlores: Structural and Electrical Properties, Thermal Expansion, X-ray Photoelectron Spectroscopy, and Near-Edge X-ray Absorption Fine Structure Spectra. ACS Omega. 2021;6(36):23262-23273doi: 10.1021/acsomega.1c02969.
Zhuk, N. A., Krzhizhanovskaya, M. G., Sekushin, N. A., Kharton, V. V., Koroleva, A. V., Nekipelov, S. V., Sivkov, D. V., Sivkov, V. N., Makeev, B. A., Lebedev, A. M., Chumakov, R. G., & Kovalenko, S. Y. (2021). Novel Ni-Doped Bismuth-Magnesium Tantalate Pyrochlores: Structural and Electrical Properties, Thermal Expansion, X-ray Photoelectron Spectroscopy, and Near-Edge X-ray Absorption Fine Structure Spectra. ACS omega, 6(36), 23262-23273. https://doi.org/10.1021/acsomega.1c02969
Zhuk, Nadezhda A, et al. "Novel Ni-Doped Bismuth-Magnesium Tantalate Pyrochlores: Structural and Electrical Properties, Thermal Expansion, X-ray Photoelectron Spectroscopy, and Near-Edge X-ray Absorption Fine Structure Spectra." ACS omega vol. 6,36 (2021): 23262-23273. doi: https://doi.org/10.1021/acsomega.1c02969
Zhuk NA, Krzhizhanovskaya MG, Sekushin NA, Kharton VV, Koroleva AV, Nekipelov SV, Sivkov DV, Sivkov VN, Makeev BA, Lebedev AM, Chumakov RG, Kovalenko SY. Novel Ni-Doped Bismuth-Magnesium Tantalate Pyrochlores: Structural and Electrical Properties, Thermal Expansion, X-ray Photoelectron Spectroscopy, and Near-Edge X-ray Absorption Fine Structure Spectra. ACS Omega. 2021 Aug 30;6(36):23262-23273. doi: 10.1021/acsomega.1c02969. eCollection 2021 Sep 14. PMID: 34549126; PMCID: PMC8444297.
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