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ARF: a versatile DNA damage response ally at the crossroads of development and tumorigenesis.

Frontiers in genetics

Kotsinas A, Papanagnou P, Evangelou K, Trigas GC, Kostourou V, Townsend P, Gorgoulis VG.
PMID: 25101116
Front Genet. 2014 Jul 22;5:236. doi: 10.3389/fgene.2014.00236. eCollection 2014.

Alternative reading frame (ARF) is a tumor suppressor protein that senses oncogenic and other stressogenic signals. It can trigger p53-dependent and -independent responses with cell cycle arrest and apoptosis induction being the most prominent ones. Other ARF activities, particularly...

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Kotsinas A, Papanagnou P, Evangelou K, et al. ARF: a versatile DNA damage response ally at the crossroads of development and tumorigenesis. Front Genet. 2014;5:236doi: 10.3389/fgene.2014.00236.
Kotsinas, A., Papanagnou, P., Evangelou, K., Trigas, G. C., Kostourou, V., Townsend, P., & Gorgoulis, V. G. (2014). ARF: a versatile DNA damage response ally at the crossroads of development and tumorigenesis. Frontiers in genetics, 5236. https://doi.org/10.3389/fgene.2014.00236
Kotsinas, Athanassios, et al. "ARF: a versatile DNA damage response ally at the crossroads of development and tumorigenesis." Frontiers in genetics vol. 5 (2014): 236. doi: https://doi.org/10.3389/fgene.2014.00236
Kotsinas A, Papanagnou P, Evangelou K, Trigas GC, Kostourou V, Townsend P, Gorgoulis VG. ARF: a versatile DNA damage response ally at the crossroads of development and tumorigenesis. Front Genet. 2014 Jul 22;5:236. doi: 10.3389/fgene.2014.00236. eCollection 2014. PMID: 25101116; PMCID: PMC4106421.
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Use of Pistacia terebinthus resin as immobilization support for Lactobacillus casei cells and application in selected dairy products.

Journal of food science and technology

Schoina V, Terpou A, Angelika-Ioanna G, Koutinas A, Kanellaki M, Bosnea L.
PMID: 26344983
J Food Sci Technol. 2015 Sep;52(9):5700-8. doi: 10.1007/s13197-014-1627-9. Epub 2014 Nov 14.

Resin from Pistacia terebinthus tree was used for the immobilization of L. casei ATCC 393 cells. The encapsulated L. casei cells biocatalysts were added as adjuncts during yogurt production at 45 °C and probiotic viability was assessed during storage...

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Schoina V, Terpou A, Angelika-Ioanna G, et al. Use of Pistacia terebinthus resin as immobilization support for Lactobacillus casei cells and application in selected dairy products. J Food Sci Technol. 2014;52(9):5700-8doi: 10.1007/s13197-014-1627-9.
Schoina, V., Terpou, A., Angelika-Ioanna, G., Koutinas, A., Kanellaki, M., & Bosnea, L. (2015). Use of Pistacia terebinthus resin as immobilization support for Lactobacillus casei cells and application in selected dairy products. Journal of food science and technology, 52(9), 5700-8. https://doi.org/10.1007/s13197-014-1627-9
Schoina, Vasiliki, et al. "Use of Pistacia terebinthus resin as immobilization support for Lactobacillus casei cells and application in selected dairy products." Journal of food science and technology vol. 52,9 (2015): 5700-8. doi: https://doi.org/10.1007/s13197-014-1627-9
Schoina V, Terpou A, Angelika-Ioanna G, Koutinas A, Kanellaki M, Bosnea L. Use of Pistacia terebinthus resin as immobilization support for Lactobacillus casei cells and application in selected dairy products. J Food Sci Technol. 2015 Sep;52(9):5700-8. doi: 10.1007/s13197-014-1627-9. Epub 2014 Nov 14. PMID: 26344983; PMCID: PMC4554640.
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Inducible h-ras gene-expression controlled by an allosterically regulated transactivator.

Oncology reports

Liloglou T, Kotsinas A, Spandidos D.
PMID: 21607461
Oncol Rep. 1994 Sep;1(5):889-93. doi: 10.3892/or.1.5.889.

Inducible promoters have been employed widely to control the transcription of specific genes and thus to elucidate their role. We constructed a plasmid in which three lac operator sequences and the SV40 early promoter were placed upstream of the...

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Liloglou T, Kotsinas A, Spandidos D. Inducible h-ras gene-expression controlled by an allosterically regulated transactivator. Oncol Rep. 1994;1(5):889-93doi: 10.3892/or.1.5.889.
Liloglou, T., Kotsinas, A., & Spandidos, D. (1994). Inducible h-ras gene-expression controlled by an allosterically regulated transactivator. Oncology reports, 1(5), 889-93. https://doi.org/10.3892/or.1.5.889
Liloglou, T, et al. "Inducible h-ras gene-expression controlled by an allosterically regulated transactivator." Oncology reports vol. 1,5 (1994): 889-93. doi: https://doi.org/10.3892/or.1.5.889
Liloglou T, Kotsinas A, Spandidos D. Inducible h-ras gene-expression controlled by an allosterically regulated transactivator. Oncol Rep. 1994 Sep;1(5):889-93. doi: 10.3892/or.1.5.889. PMID: 21607461.
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European vs. Egyptian HCV-4 patients with elevated baseline HCV RNA, treated with PEG-IFN-α2a and ribavirin: the role of rapid and early virologic response.

Hepatitis monthly

Dimitroulopoulos D, Elefsiniotis I, Pavlidis C, Xinopoulos D, Tsamakidis K, Patsavela S, Kypreos D, Ferderigou A, Korkolis D, Koutsounas S, Saroglou G, Paraskevas E.
PMID: 22308139
Hepat Mon. 2010;10(3):193-8. Epub 2010 Sep 01.

BACKGROUND AND AIMS: Despite the recent spread of hepatitis C virus genotype 4 (HCV-4) into European countries, very little is known about the influence of ethnicity on treatment outcomes in patients with HCV-4. The aim of this study was...

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Dimitroulopoulos D, Elefsiniotis I, Pavlidis C, et al. European vs. Egyptian HCV-4 patients with elevated baseline HCV RNA, treated with PEG-IFN-α2a and ribavirin: the role of rapid and early virologic response. Hepat Mon. 2010;10(3):193-8
Dimitroulopoulos, D., Elefsiniotis, I., Pavlidis, C., Xinopoulos, D., Tsamakidis, K., Patsavela, S., Kypreos, D., Ferderigou, A., Korkolis, D., Koutsounas, S., Saroglou, G., & Paraskevas, E. (2010). European vs. Egyptian HCV-4 patients with elevated baseline HCV RNA, treated with PEG-IFN-α2a and ribavirin: the role of rapid and early virologic response. Hepatitis monthly, 10(3), 193-8.
Dimitroulopoulos, Dimitrios, et al. "European vs. Egyptian HCV-4 patients with elevated baseline HCV RNA, treated with PEG-IFN-α2a and ribavirin: the role of rapid and early virologic response." Hepatitis monthly vol. 10,3 (2010): 193-8.
Dimitroulopoulos D, Elefsiniotis I, Pavlidis C, Xinopoulos D, Tsamakidis K, Patsavela S, Kypreos D, Ferderigou A, Korkolis D, Koutsounas S, Saroglou G, Paraskevas E. European vs. Egyptian HCV-4 patients with elevated baseline HCV RNA, treated with PEG-IFN-α2a and ribavirin: the role of rapid and early virologic response. Hepat Mon. 2010;10(3):193-8. Epub 2010 Sep 01. PMID: 22308139; PMCID: PMC3269084.
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Genotype 4 HCV infection is difficult to cure with pegylated interferon and ribavirin. Results from a Greek Nationwide Cohort Study.

Hippokratia

Anagnostou O, Manolakopoulos S, Bakoyannis G, Papatheodoridis G, Zisouli A, Raptopoulou-Gigi M, Manesis E, Ketikoglou I, Dalekos G, Gogos C, Vassiliadis T, Tzourmakliotis D, Karatapanis S, Kanatakis S, Zoumpoulis -, Hounta A, Koutsounas S, Giannoulis G, Tassopoulos N, Touloumi G.
PMID: 25125954
Hippokratia. 2014 Jan;18(1):57-64.

BACKGROUND AND AIM: Patients with genotype 4 (G4) chronic hepatitis C (CHC) are considered a difficult to treat population, although current data on G4 treatment responsiveness and duration are controversial. Greece represents a country with an intermediate prevalence of...

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Anagnostou O, Manolakopoulos S, Bakoyannis G, et al. Genotype 4 HCV infection is difficult to cure with pegylated interferon and ribavirin. Results from a Greek Nationwide Cohort Study. Hippokratia. 2014;18(1):57-64
Anagnostou, O., Manolakopoulos, S., Bakoyannis, G., Papatheodoridis, G., Zisouli, A., Raptopoulou-Gigi, M., Manesis, E., Ketikoglou, I., Dalekos, G., Gogos, C., Vassiliadis, T., Tzourmakliotis, D., Karatapanis, S., Kanatakis, S., Zoumpoulis, -., Hounta, A., Koutsounas, S., Giannoulis, G., Tassopoulos, N., & Touloumi, G. (2014). Genotype 4 HCV infection is difficult to cure with pegylated interferon and ribavirin. Results from a Greek Nationwide Cohort Study. Hippokratia, 18(1), 57-64.
Anagnostou, O, et al. "Genotype 4 HCV infection is difficult to cure with pegylated interferon and ribavirin. Results from a Greek Nationwide Cohort Study." Hippokratia vol. 18,1 (2014): 57-64.
Anagnostou O, Manolakopoulos S, Bakoyannis G, Papatheodoridis G, Zisouli A, Raptopoulou-Gigi M, Manesis E, Ketikoglou I, Dalekos G, Gogos C, Vassiliadis T, Tzourmakliotis D, Karatapanis S, Kanatakis S, Zoumpoulis -, Hounta A, Koutsounas S, Giannoulis G, Tassopoulos N, Touloumi G. Genotype 4 HCV infection is difficult to cure with pegylated interferon and ribavirin. Results from a Greek Nationwide Cohort Study. Hippokratia. 2014 Jan;18(1):57-64. PMID: 25125954; PMCID: PMC4103044.
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Improving the prediction of organism-level toxicity through integration of chemical, protein target and cytotoxicity qHTS data.

Toxicology research

Allen CHG, Koutsoukas A, Cortés-Ciriano I, Murrell DS, Malliavin TE, Glen RC, Bender A.
PMID: 30090397
Toxicol Res (Camb). 2016 Mar 03;5(3):883-894. doi: 10.1039/c5tx00406c. eCollection 2016 May 01.

Prediction of compound toxicity is essential because covering the vast chemical space requiring safety assessment using traditional experimentally-based, resource-intensive techniques is impossible. However, such prediction is nontrivial due to the complex causal relationship between compound structure and

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Allen CHG, Koutsoukas A, Cortés-Ciriano I, et al. Improving the prediction of organism-level toxicity through integration of chemical, protein target and cytotoxicity qHTS data. Toxicol Res (Camb). 2016;5(3):883-894doi: 10.1039/c5tx00406c.
Allen, C. H. G., Koutsoukas, A., Cortés-Ciriano, I., Murrell, D. S., Malliavin, T. E., Glen, R. C., & Bender, A. (2016). Improving the prediction of organism-level toxicity through integration of chemical, protein target and cytotoxicity qHTS data. Toxicology research, 5(3), 883-894. https://doi.org/10.1039/c5tx00406c
Allen, Chad H G, et al. "Improving the prediction of organism-level toxicity through integration of chemical, protein target and cytotoxicity qHTS data." Toxicology research vol. 5,3 (2016): 883-894. doi: https://doi.org/10.1039/c5tx00406c
Allen CHG, Koutsoukas A, Cortés-Ciriano I, Murrell DS, Malliavin TE, Glen RC, Bender A. Improving the prediction of organism-level toxicity through integration of chemical, protein target and cytotoxicity qHTS data. Toxicol Res (Camb). 2016 Mar 03;5(3):883-894. doi: 10.1039/c5tx00406c. eCollection 2016 May 01. PMID: 30090397; PMCID: PMC6062365.
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Chemical Profiling, Bioactivity Evaluation and the Discovery of a Novel Biopigment Produced by .

Molecules (Basel, Switzerland)

Tsiailanis AD, Pateraki C, Kyriazou M, Chatzigiannis CM, Chatziathanasiadou M, Parisis N, Mandala I, Tzakos AG, Koutinas A.
PMID: 35011300
Molecules. 2021 Dec 23;27(1). doi: 10.3390/molecules27010069.

Biobased pigments are environmentally friendly alternatives to synthetic variants with an increased market demand. Production of pigments via fermentation is a promising process, yet optimization of the production yield and rate is crucial. Herein, we evaluated the potential of

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Tsiailanis AD, Pateraki C, Kyriazou M, et al. Chemical Profiling, Bioactivity Evaluation and the Discovery of a Novel Biopigment Produced by . Molecules. 2021;27(1)doi: 10.3390/molecules27010069.
Tsiailanis, A. D., Pateraki, C., Kyriazou, M., Chatzigiannis, C. M., Chatziathanasiadou, M., Parisis, N., Mandala, I., Tzakos, A. G., & Koutinas, A. (2021). Chemical Profiling, Bioactivity Evaluation and the Discovery of a Novel Biopigment Produced by . Molecules (Basel, Switzerland), 27(1), . https://doi.org/10.3390/molecules27010069
Tsiailanis, Antonis D, et al. "Chemical Profiling, Bioactivity Evaluation and the Discovery of a Novel Biopigment Produced by ." Molecules (Basel, Switzerland) vol. 27,1 (2021). doi: https://doi.org/10.3390/molecules27010069
Tsiailanis AD, Pateraki C, Kyriazou M, Chatzigiannis CM, Chatziathanasiadou M, Parisis N, Mandala I, Tzakos AG, Koutinas A. Chemical Profiling, Bioactivity Evaluation and the Discovery of a Novel Biopigment Produced by . Molecules. 2021 Dec 23;27(1). doi: 10.3390/molecules27010069. PMID: 35011300.
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Cartesian message passing neural networks for directional properties: Fast and transferable atomic multipoles.

The Journal of chemical physics

Glick ZL, Koutsoukas A, Cheney DL, Sherrill CD.
PMID: 34241239
J Chem Phys. 2021 Jun 14;154(22):224103. doi: 10.1063/5.0050444.

The message passing neural network (MPNN) framework is a promising tool for modeling atomic properties but is, until recently, incompatible with directional properties, such as Cartesian tensors. We propose a modified Cartesian MPNN (CMPNN) suitable for predicting atom-centered multipoles,...

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Glick ZL, Koutsoukas A, Cheney DL, et al. Cartesian message passing neural networks for directional properties: Fast and transferable atomic multipoles. J Chem Phys. 2021;154(22):224103doi: 10.1063/5.0050444.
Glick, Z. L., Koutsoukas, A., Cheney, D. L., & Sherrill, C. D. (2021). Cartesian message passing neural networks for directional properties: Fast and transferable atomic multipoles. The Journal of chemical physics, 154(22), 224103. https://doi.org/10.1063/5.0050444
Glick, Zachary L, et al. "Cartesian message passing neural networks for directional properties: Fast and transferable atomic multipoles." The Journal of chemical physics vol. 154,22 (2021): 224103. doi: https://doi.org/10.1063/5.0050444
Glick ZL, Koutsoukas A, Cheney DL, Sherrill CD. Cartesian message passing neural networks for directional properties: Fast and transferable atomic multipoles. J Chem Phys. 2021 Jun 14;154(22):224103. doi: 10.1063/5.0050444. PMID: 34241239.
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Antioxidant Status of Broiler Chickens Fed Diets Supplemented with Vinification By-Products: A Valorization Approach.

Antioxidants (Basel, Switzerland)

Mavrommatis A, Giamouri E, Myrtsi ED, Evergetis E, Filippi K, Papapostolou H, Koulocheri SD, Zoidis E, Pappas AC, Koutinas A, Haroutounian SA, Tsiplakou E.
PMID: 34439498
Antioxidants (Basel). 2021 Aug 05;10(8). doi: 10.3390/antiox10081250.

Vinification by-products display great potential for utilization as feed additives rich in antioxidant compounds. Thus, the effect of dietary ground grape pomace (GGP), wine lees extract rich in yeast cell walls (WYC), and grape stem extracts (PE) on the...

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Mavrommatis A, Giamouri E, Myrtsi ED, et al. Antioxidant Status of Broiler Chickens Fed Diets Supplemented with Vinification By-Products: A Valorization Approach. Antioxidants (Basel). 2021;10(8)doi: 10.3390/antiox10081250.
Mavrommatis, A., Giamouri, E., Myrtsi, E. D., Evergetis, E., Filippi, K., Papapostolou, H., Koulocheri, S. D., Zoidis, E., Pappas, A. C., Koutinas, A., Haroutounian, S. A., & Tsiplakou, E. (2021). Antioxidant Status of Broiler Chickens Fed Diets Supplemented with Vinification By-Products: A Valorization Approach. Antioxidants (Basel, Switzerland), 10(8), . https://doi.org/10.3390/antiox10081250
Mavrommatis, Alexandros, et al. "Antioxidant Status of Broiler Chickens Fed Diets Supplemented with Vinification By-Products: A Valorization Approach." Antioxidants (Basel, Switzerland) vol. 10,8 (2021). doi: https://doi.org/10.3390/antiox10081250
Mavrommatis A, Giamouri E, Myrtsi ED, Evergetis E, Filippi K, Papapostolou H, Koulocheri SD, Zoidis E, Pappas AC, Koutinas A, Haroutounian SA, Tsiplakou E. Antioxidant Status of Broiler Chickens Fed Diets Supplemented with Vinification By-Products: A Valorization Approach. Antioxidants (Basel). 2021 Aug 05;10(8). doi: 10.3390/antiox10081250. PMID: 34439498; PMCID: PMC8389203.
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The Role of E3, E4 Ubiquitin Ligase (UBE4B) in Human Pathologies.

Cancers

Antoniou N, Lagopati N, Balourdas DI, Nikolaou M, Papalampros A, Vasileiou PVS, Myrianthopoulos V, Kotsinas A, Shiloh Y, Liontos M, Gorgoulis VG.
PMID: 31878315
Cancers (Basel). 2019 Dec 24;12(1). doi: 10.3390/cancers12010062.

The genome is exposed daily to many deleterious factors. Ubiquitination is a mechanism that regulates several crucial cellular functions, allowing cells to react upon various stimuli in order to preserve their homeostasis. Ubiquitin ligases act as specific regulators and...

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Antoniou N, Lagopati N, Balourdas DI, et al. The Role of E3, E4 Ubiquitin Ligase (UBE4B) in Human Pathologies. Cancers (Basel). 2019;12(1)doi: 10.3390/cancers12010062.
Antoniou, N., Lagopati, N., Balourdas, D. I., Nikolaou, M., Papalampros, A., Vasileiou, P. V. S., Myrianthopoulos, V., Kotsinas, A., Shiloh, Y., Liontos, M., & Gorgoulis, V. G. (2019). The Role of E3, E4 Ubiquitin Ligase (UBE4B) in Human Pathologies. Cancers, 12(1), . https://doi.org/10.3390/cancers12010062
Antoniou, Nikolaos, et al. "The Role of E3, E4 Ubiquitin Ligase (UBE4B) in Human Pathologies." Cancers vol. 12,1 (2019). doi: https://doi.org/10.3390/cancers12010062
Antoniou N, Lagopati N, Balourdas DI, Nikolaou M, Papalampros A, Vasileiou PVS, Myrianthopoulos V, Kotsinas A, Shiloh Y, Liontos M, Gorgoulis VG. The Role of E3, E4 Ubiquitin Ligase (UBE4B) in Human Pathologies. Cancers (Basel). 2019 Dec 24;12(1). doi: 10.3390/cancers12010062. PMID: 31878315; PMCID: PMC7017255.
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RASSF1A disrupts the NOTCH signaling axis via SNURF/RNF4-mediated ubiquitination of HES1.

EMBO reports

Papaspyropoulos A, Angelopoulou A, Mourkioti I, Polyzou A, Pankova D, Toskas K, Lanfredini S, Pantazaki AA, Lagopati N, Kotsinas A, Evangelou K, Chronopoulos E, O'Neill E, Gorgoulis V.
PMID: 34897944
EMBO Rep. 2021 Dec 13;e51287. doi: 10.15252/embr.202051287. Epub 2021 Dec 13.

RASSF1A promoter methylation has been correlated with tumor dedifferentiation and aggressive oncogenic behavior. Nevertheless, the underlying mechanism of RASSF1A-dependent tumor dedifferentiation remains elusive. Here, we show that RASSF1A directly uncouples the NOTCH-HES1 axis, a key suppressor of differentiation. Interestingly,...

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Papaspyropoulos A, Angelopoulou A, Mourkioti I, et al. RASSF1A disrupts the NOTCH signaling axis via SNURF/RNF4-mediated ubiquitination of HES1. EMBO Rep. 2021;e51287doi: 10.15252/embr.202051287.
Papaspyropoulos, A., Angelopoulou, A., Mourkioti, I., Polyzou, A., Pankova, D., Toskas, K., Lanfredini, S., Pantazaki, A. A., Lagopati, N., Kotsinas, A., Evangelou, K., Chronopoulos, E., O'Neill, E., & Gorgoulis, V. (2021). RASSF1A disrupts the NOTCH signaling axis via SNURF/RNF4-mediated ubiquitination of HES1. EMBO reports, e51287. https://doi.org/10.15252/embr.202051287
Papaspyropoulos, Angelos, et al. "RASSF1A disrupts the NOTCH signaling axis via SNURF/RNF4-mediated ubiquitination of HES1." EMBO reports vol. (2021): e51287. doi: https://doi.org/10.15252/embr.202051287
Papaspyropoulos A, Angelopoulou A, Mourkioti I, Polyzou A, Pankova D, Toskas K, Lanfredini S, Pantazaki AA, Lagopati N, Kotsinas A, Evangelou K, Chronopoulos E, O'Neill E, Gorgoulis V. RASSF1A disrupts the NOTCH signaling axis via SNURF/RNF4-mediated ubiquitination of HES1. EMBO Rep. 2021 Dec 13;e51287. doi: 10.15252/embr.202051287. Epub 2021 Dec 13. PMID: 34897944.
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Genetic Variability as a Regulator of TLR4 and NOD Signaling in Response to Bacterial Driven DNA Damage Response (DDR) and Inflammation: Focus on the Gastrointestinal (GI) Tract.

Frontiers in genetics

Spanou E, Kalisperati P, Pateras IS, Papalampros A, Barbouti A, Tzioufas AG, Kotsinas A, Sougioultzis S.
PMID: 28611823
Front Genet. 2017 May 29;8:65. doi: 10.3389/fgene.2017.00065. eCollection 2017.

The fundamental role of human Toll-like receptors (TLRs) and NOD-like receptors (NLRs), the two most studied pathogen recognition receptors (PRRs), is the protection against pathogens and excessive tissue injury. Recent evidence supports the association between TLR/NLR gene mutations and...

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Spanou E, Kalisperati P, Pateras IS, et al. Genetic Variability as a Regulator of TLR4 and NOD Signaling in Response to Bacterial Driven DNA Damage Response (DDR) and Inflammation: Focus on the Gastrointestinal (GI) Tract. Front Genet. 2017;8:65doi: 10.3389/fgene.2017.00065.
Spanou, E., Kalisperati, P., Pateras, I. S., Papalampros, A., Barbouti, A., Tzioufas, A. G., Kotsinas, A., & Sougioultzis, S. (2017). Genetic Variability as a Regulator of TLR4 and NOD Signaling in Response to Bacterial Driven DNA Damage Response (DDR) and Inflammation: Focus on the Gastrointestinal (GI) Tract. Frontiers in genetics, 865. https://doi.org/10.3389/fgene.2017.00065
Spanou, Evagelia, et al. "Genetic Variability as a Regulator of TLR4 and NOD Signaling in Response to Bacterial Driven DNA Damage Response (DDR) and Inflammation: Focus on the Gastrointestinal (GI) Tract." Frontiers in genetics vol. 8 (2017): 65. doi: https://doi.org/10.3389/fgene.2017.00065
Spanou E, Kalisperati P, Pateras IS, Papalampros A, Barbouti A, Tzioufas AG, Kotsinas A, Sougioultzis S. Genetic Variability as a Regulator of TLR4 and NOD Signaling in Response to Bacterial Driven DNA Damage Response (DDR) and Inflammation: Focus on the Gastrointestinal (GI) Tract. Front Genet. 2017 May 29;8:65. doi: 10.3389/fgene.2017.00065. eCollection 2017. PMID: 28611823; PMCID: PMC5447025.
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