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Description of an optimized ChIP-seq analysis pipeline dedicated to genome wide identification of E4F1 binding sites in primary and transformed MEFs.

Genomics data

Houlès T, Rodier G, Le Cam L, Sardet C, Kirsh O.
PMID: 26484288
Genom Data. 2015 Jul 14;5:368-70. doi: 10.1016/j.gdata.2015.07.004. eCollection 2015 Sep.

This Data in Brief report describes the experimental and bioinformatic procedures that we used to analyze and interpret E4F1 ChIP-seq experiments published in Rodier et al. (2015) [10]. Raw and processed data are available at the GEO DataSet repository...

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Houlès T, Rodier G, Le Cam L, et al. Description of an optimized ChIP-seq analysis pipeline dedicated to genome wide identification of E4F1 binding sites in primary and transformed MEFs. Genom Data. 2015;5:368-70doi: 10.1016/j.gdata.2015.07.004.
Houlès, T., Rodier, G., Le Cam, L., Sardet, C., & Kirsh, O. (2015). Description of an optimized ChIP-seq analysis pipeline dedicated to genome wide identification of E4F1 binding sites in primary and transformed MEFs. Genomics data, 5368-70. https://doi.org/10.1016/j.gdata.2015.07.004
Houlès, Thibault, et al. "Description of an optimized ChIP-seq analysis pipeline dedicated to genome wide identification of E4F1 binding sites in primary and transformed MEFs." Genomics data vol. 5 (2015): 368-70. doi: https://doi.org/10.1016/j.gdata.2015.07.004
Houlès T, Rodier G, Le Cam L, Sardet C, Kirsh O. Description of an optimized ChIP-seq analysis pipeline dedicated to genome wide identification of E4F1 binding sites in primary and transformed MEFs. Genom Data. 2015 Jul 14;5:368-70. doi: 10.1016/j.gdata.2015.07.004. eCollection 2015 Sep. PMID: 26484288; PMCID: PMC4583703.
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The context for the thematic grouping of rare diseases to facilitate the establishment of European Reference Networks.

Orphanet journal of rare diseases

Evangelista T, Hedley V, Atalaia A, Johnson M, Lynn S, Le Cam Y, Bushby K.
PMID: 26911987
Orphanet J Rare Dis. 2016 Feb 24;11:17. doi: 10.1186/s13023-016-0398-y.

BACKGROUND: In the past few years there has been a political imperative driving the creation of European Reference Networks as these are considered a promising way to achieve equity in access to the most up to date medical care...

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Evangelista T, Hedley V, Atalaia A, et al. The context for the thematic grouping of rare diseases to facilitate the establishment of European Reference Networks. Orphanet J Rare Dis. 2016;11:17doi: 10.1186/s13023-016-0398-y.
Evangelista, T., Hedley, V., Atalaia, A., Johnson, M., Lynn, S., Le Cam, Y., & Bushby, K. (2016). The context for the thematic grouping of rare diseases to facilitate the establishment of European Reference Networks. Orphanet journal of rare diseases, 1117. https://doi.org/10.1186/s13023-016-0398-y
Evangelista, Teresinha, et al. "The context for the thematic grouping of rare diseases to facilitate the establishment of European Reference Networks." Orphanet journal of rare diseases vol. 11 (2016): 17. doi: https://doi.org/10.1186/s13023-016-0398-y
Evangelista T, Hedley V, Atalaia A, Johnson M, Lynn S, Le Cam Y, Bushby K. The context for the thematic grouping of rare diseases to facilitate the establishment of European Reference Networks. Orphanet J Rare Dis. 2016 Feb 24;11:17. doi: 10.1186/s13023-016-0398-y. PMID: 26911987; PMCID: PMC4765230.
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Evidence of Two Formae Speciales in Venturia inaequalis, Responsible for Apple and Pyracantha Scab.

Phytopathology

Le Cam B, Parisi L, Arene L.
PMID: 18944005
Phytopathology. 2002 Mar;92(3):314-20. doi: 10.1094/PHYTO.2002.92.3.314.

ABSTRACT Genetic relationships, mating crosses, and host specificity of Venturia inaequalis isolates from Malus spp. and of Spilocaea pyracanthae isolates from Pyracantha spp. were evaluated. Sequence analysis of the complete internal transcribed spacer (ITS) region (ITS1-5.8S to ITS2) revealed...

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Le Cam B, Parisi L, Arene L. Evidence of Two Formae Speciales in Venturia inaequalis, Responsible for Apple and Pyracantha Scab. Phytopathology. 2002;92(3):314-20doi: 10.1094/PHYTO.2002.92.3.314.
Le Cam, B., Parisi, L., & Arene, L. (2002). Evidence of Two Formae Speciales in Venturia inaequalis, Responsible for Apple and Pyracantha Scab. Phytopathology, 92(3), 314-20. https://doi.org/10.1094/PHYTO.2002.92.3.314
Le Cam, Bruno, et al. "Evidence of Two Formae Speciales in Venturia inaequalis, Responsible for Apple and Pyracantha Scab." Phytopathology vol. 92,3 (2002): 314-20. doi: https://doi.org/10.1094/PHYTO.2002.92.3.314
Le Cam B, Parisi L, Arene L. Evidence of Two Formae Speciales in Venturia inaequalis, Responsible for Apple and Pyracantha Scab. Phytopathology. 2002 Mar;92(3):314-20. doi: 10.1094/PHYTO.2002.92.3.314. PMID: 18944005.
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Mechanical force-driven growth of elongated bending TiO2 -based nanotubular materials for ultrafast rechargeable lithium ion batteries.

Advanced materials (Deerfield Beach, Fla.)

Tang Y, Zhang Y, Deng J, Wei J, Le Tam H, Chandran BK, Dong Z, Chen Z, Chen X.
PMID: 25043343
Adv Mater. 2014 Sep 17;26(35):6111-8. doi: 10.1002/adma.201402000. Epub 2014 Jul 10.

A stirring hydrothermal process that enables the formation of elongated bending TiO2 -based nanotubes is presented. By making use of its bending nature, the elongated TiO2 (B) nanotubular crosslinked-network anode electrode can cycle over 10 000 times in half...

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Tang Y, Zhang Y, Deng J, et al. Mechanical force-driven growth of elongated bending TiO2 -based nanotubular materials for ultrafast rechargeable lithium ion batteries. Adv Mater. 2014;26(35):6111-8doi: 10.1002/adma.201402000.
Tang, Y., Zhang, Y., Deng, J., Wei, J., Le Tam, H., Chandran, B. K., Dong, Z., Chen, Z., & Chen, X. (2014). Mechanical force-driven growth of elongated bending TiO2 -based nanotubular materials for ultrafast rechargeable lithium ion batteries. Advanced materials (Deerfield Beach, Fla.), 26(35), 6111-8. https://doi.org/10.1002/adma.201402000
Tang, Yuxin, et al. "Mechanical force-driven growth of elongated bending TiO2 -based nanotubular materials for ultrafast rechargeable lithium ion batteries." Advanced materials (Deerfield Beach, Fla.) vol. 26,35 (2014): 6111-8. doi: https://doi.org/10.1002/adma.201402000
Tang Y, Zhang Y, Deng J, Wei J, Le Tam H, Chandran BK, Dong Z, Chen Z, Chen X. Mechanical force-driven growth of elongated bending TiO2 -based nanotubular materials for ultrafast rechargeable lithium ion batteries. Adv Mater. 2014 Sep 17;26(35):6111-8. doi: 10.1002/adma.201402000. Epub 2014 Jul 10. PMID: 25043343.
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Maternal temperature exposure impairs emotional and cognitive responses and triggers dysregulation of neurodevelopment genes in fish.

PeerJ

Colson V, Cousture M, Damasceno D, Valotaire C, Nguyen T, Le Cam A, Bobe J.
PMID: 30723624
PeerJ. 2019 Jan 31;7:e6338. doi: 10.7717/peerj.6338. eCollection 2019.

Fish are sensitive to temperature, but the intergenerational consequences of maternal exposure to high temperature on offspring behavioural plasticity and underlying mechanisms are unknown. Here we show that a thermal maternal stress induces impaired emotional and cognitive responses in...

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Colson V, Cousture M, Damasceno D, et al. Maternal temperature exposure impairs emotional and cognitive responses and triggers dysregulation of neurodevelopment genes in fish. PeerJ. 2019;7:e6338doi: 10.7717/peerj.6338.
Colson, V., Cousture, M., Damasceno, D., Valotaire, C., Nguyen, T., Le Cam, A., & Bobe, J. (2019). Maternal temperature exposure impairs emotional and cognitive responses and triggers dysregulation of neurodevelopment genes in fish. PeerJ, 7e6338. https://doi.org/10.7717/peerj.6338
Colson, Violaine, et al. "Maternal temperature exposure impairs emotional and cognitive responses and triggers dysregulation of neurodevelopment genes in fish." PeerJ vol. 7 (2019): e6338. doi: https://doi.org/10.7717/peerj.6338
Colson V, Cousture M, Damasceno D, Valotaire C, Nguyen T, Le Cam A, Bobe J. Maternal temperature exposure impairs emotional and cognitive responses and triggers dysregulation of neurodevelopment genes in fish. PeerJ. 2019 Jan 31;7:e6338. doi: 10.7717/peerj.6338. eCollection 2019. PMID: 30723624; PMCID: PMC6360074.
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Topological ferroelectric nanostructures induced by mechanical strain in strontium titanate.

Physical chemistry chemical physics : PCCP

Masuda K, Le Van L, Shimada T, Kitamura T.
PMID: 31580350
Phys Chem Chem Phys. 2019 Oct 28;21(40):22420-22428. doi: 10.1039/c9cp03802g. Epub 2019 Oct 03.

Ferroelectric materials exhibit novel topological polarization configurations due to geometric confinements originating from the material shapes and interfaces at the nanoscale. In this study, we demonstrate that those nontrivial topological ferroelectric nanostructures can be tailored in paraelectric nanoporous materials...

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Masuda K, Le Van L, Shimada T, et al. Topological ferroelectric nanostructures induced by mechanical strain in strontium titanate. Phys Chem Chem Phys. 2019;21(40):22420-22428doi: 10.1039/c9cp03802g.
Masuda, K., Le Van, L., Shimada, T., & Kitamura, T. (2019). Topological ferroelectric nanostructures induced by mechanical strain in strontium titanate. Physical chemistry chemical physics : PCCP, 21(40), 22420-22428. https://doi.org/10.1039/c9cp03802g
Masuda, Kairi, et al. "Topological ferroelectric nanostructures induced by mechanical strain in strontium titanate." Physical chemistry chemical physics : PCCP vol. 21,40 (2019): 22420-22428. doi: https://doi.org/10.1039/c9cp03802g
Masuda K, Le Van L, Shimada T, Kitamura T. Topological ferroelectric nanostructures induced by mechanical strain in strontium titanate. Phys Chem Chem Phys. 2019 Oct 28;21(40):22420-22428. doi: 10.1039/c9cp03802g. Epub 2019 Oct 03. PMID: 31580350.
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Success at Scale: Outcomes of Community-Based Neurodevelopment Intervention (CASITA) for Children Ages 6-20 months With Risk of Delay in Lima, Peru.

Child development

Miller AC, Rumaldo N, Soplapuco G, Condeso A, Kammerer B, Lundy S, Faiffer F, Montañez A, Ramos K, Rojas N, Contreras C, Muñoz M, Valdivia H, Vilca D, Córdova N, Hilario P, Vibbert M, Lecca L, Shin S.
PMID: 34114651
Child Dev. 2021 Nov;92(6):e1275-e1289. doi: 10.1111/cdev.13602. Epub 2021 Jun 11.

This study is a randomized controlled trial of a 12-week community-based group parenting intervention ("CASITA") in Lima, Peru. CASITA improved neurodevelopment in a pilot study of 60 Peruvian children and subsequently scaled to 3,000 households throughout the district. The...

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Miller AC, Rumaldo N, Soplapuco G, et al. Success at Scale: Outcomes of Community-Based Neurodevelopment Intervention (CASITA) for Children Ages 6-20 months With Risk of Delay in Lima, Peru. Child Dev. 2021;92(6):e1275-e1289doi: 10.1111/cdev.13602.
Miller, A. C., Rumaldo, N., Soplapuco, G., Condeso, A., Kammerer, B., Lundy, S., Faiffer, F., Montañez, A., Ramos, K., Rojas, N., Contreras, C., Muñoz, M., Valdivia, H., Vilca, D., Córdova, N., Hilario, P., Vibbert, M., Lecca, L., & Shin, S. (2021). Success at Scale: Outcomes of Community-Based Neurodevelopment Intervention (CASITA) for Children Ages 6-20 months With Risk of Delay in Lima, Peru. Child development, 92(6), e1275-e1289. https://doi.org/10.1111/cdev.13602
Miller, Ann C, et al. "Success at Scale: Outcomes of Community-Based Neurodevelopment Intervention (CASITA) for Children Ages 6-20 months With Risk of Delay in Lima, Peru." Child development vol. 92,6 (2021): e1275-e1289. doi: https://doi.org/10.1111/cdev.13602
Miller AC, Rumaldo N, Soplapuco G, Condeso A, Kammerer B, Lundy S, Faiffer F, Montañez A, Ramos K, Rojas N, Contreras C, Muñoz M, Valdivia H, Vilca D, Córdova N, Hilario P, Vibbert M, Lecca L, Shin S. Success at Scale: Outcomes of Community-Based Neurodevelopment Intervention (CASITA) for Children Ages 6-20 months With Risk of Delay in Lima, Peru. Child Dev. 2021 Nov;92(6):e1275-e1289. doi: 10.1111/cdev.13602. Epub 2021 Jun 11. PMID: 34114651.
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Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish.

Genomics

Żarski D, Le Cam A, Frohlich T, Kösters M, Klopp C, Nynca J, Ciesielski S, Sarosiek B, Dryl K, Montfort J, Król J, Fontaine P, Ciereszko A, Bobe J.
PMID: 34508856
Genomics. 2021 Nov;113(6):3811-3826. doi: 10.1016/j.ygeno.2021.09.003. Epub 2021 Sep 09.

The aim of this study was to investigate the respective contribution of maternally-inherited mRNAs and proteins to egg molecular cargo and to its developmental competence in fish using pikeperch as a model. Our study provides novel insights into the...

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Żarski D, Le Cam A, Frohlich T, et al. Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. Genomics. 2021;113(6):3811-3826doi: 10.1016/j.ygeno.2021.09.003.
Żarski, D., Le Cam, A., Frohlich, T., Kösters, M., Klopp, C., Nynca, J., Ciesielski, S., Sarosiek, B., Dryl, K., Montfort, J., Król, J., Fontaine, P., Ciereszko, A., & Bobe, J. (2021). Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. Genomics, 113(6), 3811-3826. https://doi.org/10.1016/j.ygeno.2021.09.003
Żarski, Daniel, et al. "Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish." Genomics vol. 113,6 (2021): 3811-3826. doi: https://doi.org/10.1016/j.ygeno.2021.09.003
Żarski D, Le Cam A, Frohlich T, Kösters M, Klopp C, Nynca J, Ciesielski S, Sarosiek B, Dryl K, Montfort J, Król J, Fontaine P, Ciereszko A, Bobe J. Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. Genomics. 2021 Nov;113(6):3811-3826. doi: 10.1016/j.ygeno.2021.09.003. Epub 2021 Sep 09. PMID: 34508856.
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Reuse of medical face masks in domestic and community settings without sacrificing safety: Ecological and economical lessons from the Covid-19 pandemic.

Chemosphere

Alcaraz JP, Le Coq L, Pourchez J, Thomas D, Chazelet S, Boudry I, Barbado M, Silvent S, Dessale C, Antoine F, Guimier-Pingault C, Cortella L, Rouif S, Bardin-Monnier N, Charvet A, Dufaud O, Leclerc L, Montigaud Y, Laurent C, Verhoeven P, Joubert A, Bouhanguel A, Andres Y, Gaffé J, Martin DK, Huet C, Boisset S, Maurin M, Rumeau P, Charlot F, Richaud E, Moreau-Gaudry A, Bonneterre V, Cinquin P, Landelle C.
PMID: 34600007
Chemosphere. 2022 Feb;288:132364. doi: 10.1016/j.chemosphere.2021.132364. Epub 2021 Sep 29.

The need for personal protective equipment increased exponentially in response to the Covid-19 pandemic. To cope with the mask shortage during springtime 2020, a French consortium was created to find ways to reuse medical and respiratory masks in healthcare...

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Alcaraz JP, Le Coq L, Pourchez J, et al. Reuse of medical face masks in domestic and community settings without sacrificing safety: Ecological and economical lessons from the Covid-19 pandemic. Chemosphere. 2021;288:132364doi: 10.1016/j.chemosphere.2021.132364.
Alcaraz, J. P., Le Coq, L., Pourchez, J., Thomas, D., Chazelet, S., Boudry, I., Barbado, M., Silvent, S., Dessale, C., Antoine, F., Guimier-Pingault, C., Cortella, L., Rouif, S., Bardin-Monnier, N., Charvet, A., Dufaud, O., Leclerc, L., Montigaud, Y., Laurent, C., Verhoeven, P., Joubert, A., Bouhanguel, A., Andres, Y., Gaffé, J., Martin, D. K., Huet, C., Boisset, S., Maurin, M., Rumeau, P., Charlot, F., Richaud, E., Moreau-Gaudry, A., Bonneterre, V., Cinquin, P., & Landelle, C. (2022). Reuse of medical face masks in domestic and community settings without sacrificing safety: Ecological and economical lessons from the Covid-19 pandemic. Chemosphere, 288132364. https://doi.org/10.1016/j.chemosphere.2021.132364
Alcaraz, Jean-Pierre, et al. "Reuse of medical face masks in domestic and community settings without sacrificing safety: Ecological and economical lessons from the Covid-19 pandemic." Chemosphere vol. 288 (2022): 132364. doi: https://doi.org/10.1016/j.chemosphere.2021.132364
Alcaraz JP, Le Coq L, Pourchez J, Thomas D, Chazelet S, Boudry I, Barbado M, Silvent S, Dessale C, Antoine F, Guimier-Pingault C, Cortella L, Rouif S, Bardin-Monnier N, Charvet A, Dufaud O, Leclerc L, Montigaud Y, Laurent C, Verhoeven P, Joubert A, Bouhanguel A, Andres Y, Gaffé J, Martin DK, Huet C, Boisset S, Maurin M, Rumeau P, Charlot F, Richaud E, Moreau-Gaudry A, Bonneterre V, Cinquin P, Landelle C. Reuse of medical face masks in domestic and community settings without sacrificing safety: Ecological and economical lessons from the Covid-19 pandemic. Chemosphere. 2022 Feb;288:132364. doi: 10.1016/j.chemosphere.2021.132364. Epub 2021 Sep 29. PMID: 34600007; PMCID: PMC8491628.
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Applying the Knowledge-to-Action Framework to Implement Gait and Balance Assessments in Inpatient Stroke Rehabilitation.

Archives of physical medicine and rehabilitation

Moore JL, Virva R, Henderson C, Lenca L, Butzer JF, Lovell L, Roth E, Graham ID, Hornby TG.
PMID: 33253695
Arch Phys Med Rehabil. 2020 Nov 27; doi: 10.1016/j.apmr.2020.10.133. Epub 2020 Nov 27.

OBJECTIVES: The overall objectives of this project were to implement and sustain use of a gait assessment battery (GAB) that included the Berg Balance Scale, 10-meter walk test, and 6-minute walk test during inpatient stroke rehabilitation. The study objective...

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Moore JL, Virva R, Henderson C, et al. Applying the Knowledge-to-Action Framework to Implement Gait and Balance Assessments in Inpatient Stroke Rehabilitation. Arch Phys Med Rehabil. 2020;doi: 10.1016/j.apmr.2020.10.133.
Moore, J. L., Virva, R., Henderson, C., Lenca, L., Butzer, J. F., Lovell, L., Roth, E., Graham, I. D., & Hornby, T. G. (2020). Applying the Knowledge-to-Action Framework to Implement Gait and Balance Assessments in Inpatient Stroke Rehabilitation. Archives of physical medicine and rehabilitation, . https://doi.org/10.1016/j.apmr.2020.10.133
Moore, Jennifer L, et al. "Applying the Knowledge-to-Action Framework to Implement Gait and Balance Assessments in Inpatient Stroke Rehabilitation." Archives of physical medicine and rehabilitation vol. (2020). doi: https://doi.org/10.1016/j.apmr.2020.10.133
Moore JL, Virva R, Henderson C, Lenca L, Butzer JF, Lovell L, Roth E, Graham ID, Hornby TG. Applying the Knowledge-to-Action Framework to Implement Gait and Balance Assessments in Inpatient Stroke Rehabilitation. Arch Phys Med Rehabil. 2020 Nov 27; doi: 10.1016/j.apmr.2020.10.133. Epub 2020 Nov 27. PMID: 33253695.
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Reply to E. Vicente et al.

European journal of human genetics : EJHG

Rath A, Lambert DM, Olry A, Rodwell C, Le Cam Y.
PMID: 33262444
Eur J Hum Genet. 2021 Jun;29(6):1034-1035. doi: 10.1038/s41431-020-00764-y. Epub 2020 Dec 01.

No abstract available.

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Rath A, Lambert DM, Olry A, et al. Reply to E. Vicente et al. Eur J Hum Genet. 2020;29(6):1034-1035doi: 10.1038/s41431-020-00764-y.
Rath, A., Lambert, D. M., Olry, A., Rodwell, C., & Le Cam, Y. (2021). Reply to E. Vicente et al. European journal of human genetics : EJHG, 29(6), 1034-1035. https://doi.org/10.1038/s41431-020-00764-y
Rath, Ana, et al. "Reply to E. Vicente et al." European journal of human genetics : EJHG vol. 29,6 (2021): 1034-1035. doi: https://doi.org/10.1038/s41431-020-00764-y
Rath A, Lambert DM, Olry A, Rodwell C, Le Cam Y. Reply to E. Vicente et al. Eur J Hum Genet. 2021 Jun;29(6):1034-1035. doi: 10.1038/s41431-020-00764-y. Epub 2020 Dec 01. PMID: 33262444; PMCID: PMC8187642.
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Successful Imatinib Treatment of an Abdominal Compartment Syndrome due to Huge Gastrointestinal Stromal Tumour.

Case reports in oncology

Bertucci A, Guiramand J, Mescam L, Monneur A, Bisbal M, Chow-Chine L, Sannini A, Perrot D, De Luca V, Mokart D, Bertucci F.
PMID: 31572153
Case Rep Oncol. 2019 Aug 13;12(2):644-649. doi: 10.1159/000502338. eCollection 2019.

Gastrointestinal stromal tumours (GISTs) are the most common digestive mesenchymal tumours, whose prognosis has been revolutionised by targeted therapies such as oral imatinib. Abdomen compartment syndrome (ACS) is associated with mortality superior to 50% in adults. ACS has never...

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Bertucci A, Guiramand J, Mescam L, et al. Successful Imatinib Treatment of an Abdominal Compartment Syndrome due to Huge Gastrointestinal Stromal Tumour. Case Rep Oncol. 2019;12(2):644-649doi: 10.1159/000502338.
Bertucci, A., Guiramand, J., Mescam, L., Monneur, A., Bisbal, M., Chow-Chine, L., Sannini, A., Perrot, D., De Luca, V., Mokart, D., & Bertucci, F. (2019). Successful Imatinib Treatment of an Abdominal Compartment Syndrome due to Huge Gastrointestinal Stromal Tumour. Case reports in oncology, 12(2), 644-649. https://doi.org/10.1159/000502338
Bertucci, Alexandre, et al. "Successful Imatinib Treatment of an Abdominal Compartment Syndrome due to Huge Gastrointestinal Stromal Tumour." Case reports in oncology vol. 12,2 (2019): 644-649. doi: https://doi.org/10.1159/000502338
Bertucci A, Guiramand J, Mescam L, Monneur A, Bisbal M, Chow-Chine L, Sannini A, Perrot D, De Luca V, Mokart D, Bertucci F. Successful Imatinib Treatment of an Abdominal Compartment Syndrome due to Huge Gastrointestinal Stromal Tumour. Case Rep Oncol. 2019 Aug 13;12(2):644-649. doi: 10.1159/000502338. eCollection 2019. PMID: 31572153; PMCID: PMC6751450.
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