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Showing 1 to 12 of 12 entries
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Genomic Prediction in Pea: Effect of Marker Density and Training Population Size and Composition on Prediction Accuracy.

Frontiers in plant science

Tayeh N, Klein A, Le Paslier MC, Jacquin F, Houtin H, Rond C, Chabert-Martinello M, Magnin-Robert JB, Marget P, Aubert G, Burstin J.
PMID: 26635819
Front Plant Sci. 2015 Nov 17;6:941. doi: 10.3389/fpls.2015.00941. eCollection 2015.

Pea is an important food and feed crop and a valuable component of low-input farming systems. Improving resistance to biotic and abiotic stresses is a major breeding target to enhance yield potential and regularity. Genomic selection (GS) has lately...

Back to the Future of Soil Metagenomics.

Frontiers in microbiology

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.
PMID: 26903960
Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016.

No abstract available.

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3).

Genomics data

Canaguier A, Grimplet J, Di Gaspero G, Scalabrin S, Duchêne E, Choisne N, Mohellibi N, Guichard C, Rombauts S, Le Clainche I, Bérard A, Chauveau A, Bounon R, Rustenholz C, Morgante M, Le Paslier MC, Brunel D, Adam-Blondon AF.
PMID: 28971018
Genom Data. 2017 Sep 18;14:56-62. doi: 10.1016/j.gdata.2017.09.002. eCollection 2017 Dec.

No abstract available.

Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the genus Rosa.

Systematic biology

Debray K, Le Paslier MC, Bérard A, Thouroude T, Michel G, Marie-Magdelaine J, Bruneau A, Foucher F, Malécot V.
PMID: 34329460
Syst Biol. 2021 Jul 30; doi: 10.1093/sysbio/syab064. Epub 2021 Jul 30.

Reticulation, caused by hybridization and allopolyploidization, is considered an important and frequent phenomenon in the evolution of numerous plant lineages. Although both processes represent important driving forces of evolution, they are mostly ignored in phylogenetic studies involving a large...

Microbial Degradation of a Recalcitrant Pesticide: Chlordecone.

Frontiers in microbiology

Chaussonnerie S, Saaidi PL, Ugarte E, Barbance A, Fossey A, Barbe V, Gyapay G, Brüls T, Chevallier M, Couturat L, Fouteau S, Muselet D, Pateau E, Cohen GN, Fonknechten N, Weissenbach J, Le Paslier D.
PMID: 28066351
Front Microbiol. 2016 Dec 20;7:2025. doi: 10.3389/fmicb.2016.02025. eCollection 2016.

Chlordecone (Kepone®) is a synthetic organochlorine insecticide (C

Microbiological versus Chemical Reductive Sulfidation: An Experimental and Theoretical Study.

ACS omega

Della-Negra O, Le Cacher de Bonneville B, Chaussonnerie S, Le Paslier D, Frison G, Saaidi PL.
PMID: 33778263
ACS Omega. 2021 Mar 09;6(11):7512-7523. doi: 10.1021/acsomega.0c06041. eCollection 2021 Mar 23.

Microbiological reductive sulfidation (RS) has rarely been documented, although it represents an efficient strategy for thiol formation. In this work, we reported on the sulfate-respiring bacterium

Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity.

Scientific reports

Della-Negra O, Chaussonnerie S, Fonknechten N, Barbance A, Muselet D, Martin DE, Fouteau S, Fischer C, Saaidi PL, Le Paslier D.
PMID: 32782344
Sci Rep. 2020 Aug 11;10(1):13545. doi: 10.1038/s41598-020-70124-9.

The insecticide chlordecone has been used in the French West Indies for decades, resulting in long term pollution, human health problems and social crisis. In addition to bacterial consortia and Citrobacter sp.86 previously described to transform chlordecone into three...

Genetic Analysis of .

Frontiers in microbiology

Barbance A, Della-Negra O, Chaussonnerie S, Delmas V, Muselet D, Ugarte E, Saaidi PL, Weissenbach J, Fischer C, Le Paslier D, Fonknechten N.
PMID: 33240246
Front Microbiol. 2020 Nov 09;11:590061. doi: 10.3389/fmicb.2020.590061. eCollection 2020.

Chlordecone (Kepone®) and γ-hexachlorocyclohexane (γ-HCH or lindane) have been used for decades in the French West Indies (FWI) resulting in long-term soil and water pollution. In a previous work, we have identified a new

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

Frontiers in microbiology

Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM.
PMID: 25983722
Front Microbiol. 2015 Apr 30;6:358. doi: 10.3389/fmicb.2015.00358. eCollection 2015.

Despite extensive direct sequencing efforts and advanced analytical tools, reconstructing microbial genomes from soil using metagenomics have been challenging due to the tremendous diversity and relatively uniform distribution of genomes found in this system. Here we used enrichment techniques...

FANCM Limits Meiotic Crossovers in Brassica Crops.

Frontiers in plant science

Blary A, Gonzalo A, Eber F, Bérard A, Bergès H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lodé M, Lucas MO, Nesi N, Lloyd A, Chèvre AM, Jenczewski E.
PMID: 29628933
Front Plant Sci. 2018 Mar 23;9:368. doi: 10.3389/fpls.2018.00368. eCollection 2018.

Meiotic crossovers (COs) are essential for proper chromosome segregation and the reshuffling of alleles during meiosis. In WT plants, the number of COs is usually small, which limits the genetic variation that can be captured by plant breeding programs....

Corrigendum: FANCM Limits Meiotic Crossovers in Brassica Crops.

Frontiers in plant science

Blary A, Gonzalo A, Eber F, Bérard A, Bergès H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lodé M, Lucas MO, Nesi N, Lloyd A, Chèvre AM, Jenczewski E.
PMID: 33343604
Front Plant Sci. 2020 Dec 04;11:604728. doi: 10.3389/fpls.2020.604728. eCollection 2020.

[This corrects the article DOI: 10.3389/fpls.2018.00368.].

Building a cluster of NLR genes conferring resistance to pests and pathogens: the story of the Vat gene cluster in cucurbits.

Horticulture research

Chovelon V, Feriche-Linares R, Barreau G, Chadoeuf J, Callot C, Gautier V, Le Paslier MC, Berad A, Faivre-Rampant P, Lagnel J, Boissot N.
PMID: 33790238
Hortic Res. 2021 Apr 01;8(1):72. doi: 10.1038/s41438-021-00507-0.

Most molecularly characterized plant resistance genes (R genes) belong to the nucleotide-binding-site-leucine-rich-repeat (NLR) receptor family and are prone to duplication and transposition with high sequence diversity. In this family, the Vat gene in melon is one of the few...

Showing 1 to 12 of 12 entries