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Relationships among Bacterial Cell Size, Productivity, and Genetic Diversity in Aquatic Environments using Cell Sorting and Flow Cytometry.

Microbial ecology

Bernard L, Courties C, Servais P, Troussellier M, Petit M, Lebaron P.
PMID: 11029083
Microb Ecol. 2000 Aug;40(2):148-158. doi: 10.1007/s002480000046.

The study of relationships between cell size and productivity is of key importance in microbial ecology to understand which members of natural aquatic communities are responsible for the overall activity and/or productivity. Flow sorting of microorganisms from different environmental...

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Bernard L, Courties C, Servais P, et al. Relationships among Bacterial Cell Size, Productivity, and Genetic Diversity in Aquatic Environments using Cell Sorting and Flow Cytometry. Microb Ecol. 2000;40(2):148-158doi: 10.1007/s002480000046.
Bernard, L., Courties, C., Servais, P., Troussellier, M., Petit, M., & Lebaron, P. (2000). Relationships among Bacterial Cell Size, Productivity, and Genetic Diversity in Aquatic Environments using Cell Sorting and Flow Cytometry. Microbial ecology, 40(2), 148-158. https://doi.org/10.1007/s002480000046
Bernard, et al. "Relationships among Bacterial Cell Size, Productivity, and Genetic Diversity in Aquatic Environments using Cell Sorting and Flow Cytometry." Microbial ecology vol. 40,2 (2000): 148-158. doi: https://doi.org/10.1007/s002480000046
Bernard L, Courties C, Servais P, Troussellier M, Petit M, Lebaron P. Relationships among Bacterial Cell Size, Productivity, and Genetic Diversity in Aquatic Environments using Cell Sorting and Flow Cytometry. Microb Ecol. 2000 Aug;40(2):148-158. doi: 10.1007/s002480000046. PMID: 11029083.
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A New Sensitive, Whole-Cell Hybridization Technique for Detection of Bacteria Involving a Biotinylated Oligonucleotide Probe Targeting rRNA and Tyramide Signal Amplification.

Applied and environmental microbiology

Lebaron P, Catala P, Fajon C, Joux F, Baudart J, Bernard L.
PMID: 16535676
Appl Environ Microbiol. 1997 Aug;63(8):3274-8. doi: 10.1128/aem.63.8.3274-3278.1997.

A tyramide signal amplification system with biotinylated oligonucleotide probes and streptavidin-horseradish peroxidase was used to increase the sensitivity of fluorescent in situ hybridization techniques. When applied to both gram-negative and -positive bacteria immobilized on glass slides, a 7- to...

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Lebaron P, Catala P, Fajon C, et al. A New Sensitive, Whole-Cell Hybridization Technique for Detection of Bacteria Involving a Biotinylated Oligonucleotide Probe Targeting rRNA and Tyramide Signal Amplification. Appl Environ Microbiol. 1997;63(8):3274-8doi: 10.1128/aem.63.8.3274-3278.1997.
Lebaron, P., Catala, P., Fajon, C., Joux, F., Baudart, J., & Bernard, L. (1997). A New Sensitive, Whole-Cell Hybridization Technique for Detection of Bacteria Involving a Biotinylated Oligonucleotide Probe Targeting rRNA and Tyramide Signal Amplification. Applied and environmental microbiology, 63(8), 3274-8. https://doi.org/10.1128/aem.63.8.3274-3278.1997
Lebaron, P, et al. "A New Sensitive, Whole-Cell Hybridization Technique for Detection of Bacteria Involving a Biotinylated Oligonucleotide Probe Targeting rRNA and Tyramide Signal Amplification." Applied and environmental microbiology vol. 63,8 (1997): 3274-8. doi: https://doi.org/10.1128/aem.63.8.3274-3278.1997
Lebaron P, Catala P, Fajon C, Joux F, Baudart J, Bernard L. A New Sensitive, Whole-Cell Hybridization Technique for Detection of Bacteria Involving a Biotinylated Oligonucleotide Probe Targeting rRNA and Tyramide Signal Amplification. Appl Environ Microbiol. 1997 Aug;63(8):3274-8. doi: 10.1128/aem.63.8.3274-3278.1997. PMID: 16535676; PMCID: PMC1389231.
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Cartilage production by rabbit articular chondrocytes on polyglycolic acid scaffolds in a closed bioreactor system.

Biotechnology and bioengineering

Dunkelman NS, Zimber MP, Lebaron RG, Pavelec R, Kwan M, Purchio AF.
PMID: 18623316
Biotechnol Bioeng. 1995 May 20;46(4):299-305. doi: 10.1002/bit.260460402.

Rabbit articular chondrocytes were seeded onto three-dimensional polyglycolic acid (PGA) scaffolds and placed into a closed bioreactor system. After 4 weeks of growth, meshes were examined for cartilage formation. Gross examination revealed solid, glistening material that had the appearance...

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Dunkelman NS, Zimber MP, Lebaron RG, et al. Cartilage production by rabbit articular chondrocytes on polyglycolic acid scaffolds in a closed bioreactor system. Biotechnol Bioeng. 1995;46(4):299-305doi: 10.1002/bit.260460402.
Dunkelman, N. S., Zimber, M. P., Lebaron, R. G., Pavelec, R., Kwan, M., & Purchio, A. F. (1995). Cartilage production by rabbit articular chondrocytes on polyglycolic acid scaffolds in a closed bioreactor system. Biotechnology and bioengineering, 46(4), 299-305. https://doi.org/10.1002/bit.260460402
Dunkelman, N S, et al. "Cartilage production by rabbit articular chondrocytes on polyglycolic acid scaffolds in a closed bioreactor system." Biotechnology and bioengineering vol. 46,4 (1995): 299-305. doi: https://doi.org/10.1002/bit.260460402
Dunkelman NS, Zimber MP, Lebaron RG, Pavelec R, Kwan M, Purchio AF. Cartilage production by rabbit articular chondrocytes on polyglycolic acid scaffolds in a closed bioreactor system. Biotechnol Bioeng. 1995 May 20;46(4):299-305. doi: 10.1002/bit.260460402. PMID: 18623316.
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Draft Genome Sequence of the Gammaproteobacterial Strain MOLA455, a Representative of a Ubiquitous Proteorhodopsin-Producing Group in the Ocean.

Genome announcements

Courties A, Riedel T, Jarek M, Papadatou M, Intertaglia L, Lebaron P, Suzuki MT.
PMID: 24482511
Genome Announc. 2014 Jan 30;2(1). doi: 10.1128/genomeA.01203-13.

Strain MOLA455 is a marine gammaproteobacterium isolated from the bay of Banyuls-sur-Mer, France. Here, we present its genome sequence and annotation. Genome analysis revealed the presence of genes associated with a possibly photoheterotrophic lifestyle that uses a proteorhodopsin protein.

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Courties A, Riedel T, Jarek M, et al. Draft Genome Sequence of the Gammaproteobacterial Strain MOLA455, a Representative of a Ubiquitous Proteorhodopsin-Producing Group in the Ocean. Genome Announc. 2014;2(1)doi: 10.1128/genomeA.01203-13.
Courties, A., Riedel, T., Jarek, M., Papadatou, M., Intertaglia, L., Lebaron, P., & Suzuki, M. T. (2014). Draft Genome Sequence of the Gammaproteobacterial Strain MOLA455, a Representative of a Ubiquitous Proteorhodopsin-Producing Group in the Ocean. Genome announcements, 2(1), . https://doi.org/10.1128/genomeA.01203-13
Courties, Alicia, et al. "Draft Genome Sequence of the Gammaproteobacterial Strain MOLA455, a Representative of a Ubiquitous Proteorhodopsin-Producing Group in the Ocean." Genome announcements vol. 2,1 (2014). doi: https://doi.org/10.1128/genomeA.01203-13
Courties A, Riedel T, Jarek M, Papadatou M, Intertaglia L, Lebaron P, Suzuki MT. Draft Genome Sequence of the Gammaproteobacterial Strain MOLA455, a Representative of a Ubiquitous Proteorhodopsin-Producing Group in the Ocean. Genome Announc. 2014 Jan 30;2(1). doi: 10.1128/genomeA.01203-13. PMID: 24482511; PMCID: PMC3907726.
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Polyethlyene Glycol 200 can Protect Rats against Drug-Induced Kidney Toxicity through Inhibition of the Renal Organic Anion Transporter 3.

Toxicological sciences : an official journal of the Society of Toxicology

Gu YZ, Chu X, Houle R, Vlasakova K, Koeplinger KA, Bourgeois I, Palyada K, Anderson KD, Brynczka C, Bhatt B, Chen F, Smith R, Amin R, Glaab WE, Lebron J, Cox K, Sistare FD.
PMID: 31406999
Toxicol Sci. 2019 Aug 12; doi: 10.1093/toxsci/kfz186. Epub 2019 Aug 12.

MK-7680, a cyclic nucleotide prodrug, caused significant kidney tubule injury in female rats when administered orally at 1000 mg/kg/day for 2 weeks using 10% Polysorbate 80 as vehicle. However, kidney injury was absent when MK-7680 was administered at the...

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Gu YZ, Chu X, Houle R, et al. Polyethlyene Glycol 200 can Protect Rats against Drug-Induced Kidney Toxicity through Inhibition of the Renal Organic Anion Transporter 3. Toxicol Sci. 2019;doi: 10.1093/toxsci/kfz186.
Gu, Y. Z., Chu, X., Houle, R., Vlasakova, K., Koeplinger, K. A., Bourgeois, I., Palyada, K., Anderson, K. D., Brynczka, C., Bhatt, B., Chen, F., Smith, R., Amin, R., Glaab, W. E., Lebron, J., Cox, K., & Sistare, F. D. (2019). Polyethlyene Glycol 200 can Protect Rats against Drug-Induced Kidney Toxicity through Inhibition of the Renal Organic Anion Transporter 3. Toxicological sciences : an official journal of the Society of Toxicology, . https://doi.org/10.1093/toxsci/kfz186
Gu, Yi-Zhong, et al. "Polyethlyene Glycol 200 can Protect Rats against Drug-Induced Kidney Toxicity through Inhibition of the Renal Organic Anion Transporter 3." Toxicological sciences : an official journal of the Society of Toxicology vol. (2019). doi: https://doi.org/10.1093/toxsci/kfz186
Gu YZ, Chu X, Houle R, Vlasakova K, Koeplinger KA, Bourgeois I, Palyada K, Anderson KD, Brynczka C, Bhatt B, Chen F, Smith R, Amin R, Glaab WE, Lebron J, Cox K, Sistare FD. Polyethlyene Glycol 200 can Protect Rats against Drug-Induced Kidney Toxicity through Inhibition of the Renal Organic Anion Transporter 3. Toxicol Sci. 2019 Aug 12; doi: 10.1093/toxsci/kfz186. Epub 2019 Aug 12. PMID: 31406999.
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AraC-FdUMP[10] Is a Next-Generation Fluoropyrimidine with Potent Antitumor Activity in PDAC and Synergy with .

Molecular cancer research : MCR

Haber AO, Jain A, Mani C, Nevler A, Agostini LC, Golan T, Palle K, Yeo CJ, Gmeiner WH, Brody JR.
PMID: 33593942
Mol Cancer Res. 2021 Apr;19(4):565-572. doi: 10.1158/1541-7786.MCR-20-0985. Epub 2021 Feb 16.

AraC-FdUMP[10] (CF10) is a second-generation polymeric fluoropyrimidine that targets both thymidylate synthase (TS), the target of 5-fluorouracil (5-FU), and DNA topoisomerase 1 (Top1), the target of irinotecan, two drugs that are key components of FOLFIRNOX, a standard-of-care regimen for...

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Haber AO, Jain A, Mani C, et al. AraC-FdUMP[10] Is a Next-Generation Fluoropyrimidine with Potent Antitumor Activity in PDAC and Synergy with . Mol Cancer Res. 2021;19(4):565-572doi: 10.1158/1541-7786.MCR-20-0985.
Haber, A. O., Jain, A., Mani, C., Nevler, A., Agostini, L. C., Golan, T., Palle, K., Yeo, C. J., Gmeiner, W. H., & Brody, J. R. (2021). AraC-FdUMP[10] Is a Next-Generation Fluoropyrimidine with Potent Antitumor Activity in PDAC and Synergy with . Molecular cancer research : MCR, 19(4), 565-572. https://doi.org/10.1158/1541-7786.MCR-20-0985
Haber, Alex O, et al. "AraC-FdUMP[10] Is a Next-Generation Fluoropyrimidine with Potent Antitumor Activity in PDAC and Synergy with ." Molecular cancer research : MCR vol. 19,4 (2021): 565-572. doi: https://doi.org/10.1158/1541-7786.MCR-20-0985
Haber AO, Jain A, Mani C, Nevler A, Agostini LC, Golan T, Palle K, Yeo CJ, Gmeiner WH, Brody JR. AraC-FdUMP[10] Is a Next-Generation Fluoropyrimidine with Potent Antitumor Activity in PDAC and Synergy with . Mol Cancer Res. 2021 Apr;19(4):565-572. doi: 10.1158/1541-7786.MCR-20-0985. Epub 2021 Feb 16. PMID: 33593942.
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Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics.

Microorganisms

Géron A, Werner J, Lebaron P, Wattiez R, Matallana-Surget S.
PMID: 34946222
Microorganisms. 2021 Dec 18;9(12). doi: 10.3390/microorganisms9122621.

The diel cycle is of enormous biological importance in that it imposes temporal structure on ecosystem productivity. In the world's oceans, microorganisms form complex communities that carry out about half of photosynthesis and the bulk of life-sustaining nutrient cycling....

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Géron A, Werner J, Lebaron P, et al. Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics. Microorganisms. 2021;9(12)doi: 10.3390/microorganisms9122621.
Géron, A., Werner, J., Lebaron, P., Wattiez, R., & Matallana-Surget, S. (2021). Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics. Microorganisms, 9(12), . https://doi.org/10.3390/microorganisms9122621
Géron, Augustin, et al. "Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics." Microorganisms vol. 9,12 (2021). doi: https://doi.org/10.3390/microorganisms9122621
Géron A, Werner J, Lebaron P, Wattiez R, Matallana-Surget S. Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics. Microorganisms. 2021 Dec 18;9(12). doi: 10.3390/microorganisms9122621. PMID: 34946222; PMCID: PMC8707726.
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The Effects of 24-Week, High-Concentration Hydrogen-Rich Water on Body Composition, Blood Lipid Profiles and Inflammation Biomarkers in Men and Women with Metabolic Syndrome: A Randomized Controlled Trial.

Diabetes, metabolic syndrome and obesity : targets and therapy

LeBaron TW, Singh RB, Fatima G, Kartikey K, Sharma JP, Ostojic SM, Gvozdjakova A, Kura B, Noda M, Mojto V, Niaz MA, Slezak J.
PMID: 32273740
Diabetes Metab Syndr Obes. 2020 Mar 24;13:889-896. doi: 10.2147/DMSO.S240122. eCollection 2020.

PURPOSE: Metabolic syndrome is associated with several medical risk factors including dyslipidemia, hyperglycemia, and obesity, which has become a worldwide pandemic. The sequelae of this condition increase the risk of cardiovascular and neurological disease and increased mortality. Its pathophysiology...

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LeBaron TW, Singh RB, Fatima G, et al. The Effects of 24-Week, High-Concentration Hydrogen-Rich Water on Body Composition, Blood Lipid Profiles and Inflammation Biomarkers in Men and Women with Metabolic Syndrome: A Randomized Controlled Trial. Diabetes Metab Syndr Obes. 2020;13:889-896doi: 10.2147/DMSO.S240122.
LeBaron, T. W., Singh, R. B., Fatima, G., Kartikey, K., Sharma, J. P., Ostojic, S. M., Gvozdjakova, A., Kura, B., Noda, M., Mojto, V., Niaz, M. A., & Slezak, J. (2020). The Effects of 24-Week, High-Concentration Hydrogen-Rich Water on Body Composition, Blood Lipid Profiles and Inflammation Biomarkers in Men and Women with Metabolic Syndrome: A Randomized Controlled Trial. Diabetes, metabolic syndrome and obesity : targets and therapy, 13889-896. https://doi.org/10.2147/DMSO.S240122
LeBaron, Tyler W, et al. "The Effects of 24-Week, High-Concentration Hydrogen-Rich Water on Body Composition, Blood Lipid Profiles and Inflammation Biomarkers in Men and Women with Metabolic Syndrome: A Randomized Controlled Trial." Diabetes, metabolic syndrome and obesity : targets and therapy vol. 13 (2020): 889-896. doi: https://doi.org/10.2147/DMSO.S240122
LeBaron TW, Singh RB, Fatima G, Kartikey K, Sharma JP, Ostojic SM, Gvozdjakova A, Kura B, Noda M, Mojto V, Niaz MA, Slezak J. The Effects of 24-Week, High-Concentration Hydrogen-Rich Water on Body Composition, Blood Lipid Profiles and Inflammation Biomarkers in Men and Women with Metabolic Syndrome: A Randomized Controlled Trial. Diabetes Metab Syndr Obes. 2020 Mar 24;13:889-896. doi: 10.2147/DMSO.S240122. eCollection 2020. PMID: 32273740; PMCID: PMC7102907.
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Response to the Letter to the Editor by Dr. Christian Surber.

Chemical research in toxicology

Downs CA, DiNardo J, Stien D, Rodrigues AMS, Lebaron P.
PMID: 34378916
Chem Res Toxicol. 2021 Sep 20;34(9):1938-1943. doi: 10.1021/acs.chemrestox.1c00217. Epub 2021 Aug 11.

No abstract available.

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Downs CA, DiNardo J, Stien D, et al. Response to the Letter to the Editor by Dr. Christian Surber. Chem Res Toxicol. 2021;34(9):1938-1943doi: 10.1021/acs.chemrestox.1c00217.
Downs, C. A., DiNardo, J., Stien, D., Rodrigues, A. M. S., & Lebaron, P. (2021). Response to the Letter to the Editor by Dr. Christian Surber. Chemical research in toxicology, 34(9), 1938-1943. https://doi.org/10.1021/acs.chemrestox.1c00217
Downs, C A, et al. "Response to the Letter to the Editor by Dr. Christian Surber." Chemical research in toxicology vol. 34,9 (2021): 1938-1943. doi: https://doi.org/10.1021/acs.chemrestox.1c00217
Downs CA, DiNardo J, Stien D, Rodrigues AMS, Lebaron P. Response to the Letter to the Editor by Dr. Christian Surber. Chem Res Toxicol. 2021 Sep 20;34(9):1938-1943. doi: 10.1021/acs.chemrestox.1c00217. Epub 2021 Aug 11. PMID: 34378916.
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Shedding light on the bacterial resistance to toxic UV filters: a comparative genomic study.

PeerJ

Lozano C, Lebaron P, Matallana-Surget S.
PMID: 34760358
PeerJ. 2021 Nov 01;9:e12278. doi: 10.7717/peerj.12278. eCollection 2021.

UV filters are toxic to marine bacteria that dominate the marine biomass. Ecotoxicology often studies the organism response but rarely integrates the toxicity mechanisms at the molecular level. In this study,

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Lozano C, Lebaron P, Matallana-Surget S. Shedding light on the bacterial resistance to toxic UV filters: a comparative genomic study. PeerJ. 2021;9:e12278doi: 10.7717/peerj.12278.
Lozano, C., Lebaron, P., & Matallana-Surget, S. (2021). Shedding light on the bacterial resistance to toxic UV filters: a comparative genomic study. PeerJ, 9e12278. https://doi.org/10.7717/peerj.12278
Lozano, Clément, et al. "Shedding light on the bacterial resistance to toxic UV filters: a comparative genomic study." PeerJ vol. 9 (2021): e12278. doi: https://doi.org/10.7717/peerj.12278
Lozano C, Lebaron P, Matallana-Surget S. Shedding light on the bacterial resistance to toxic UV filters: a comparative genomic study. PeerJ. 2021 Nov 01;9:e12278. doi: 10.7717/peerj.12278. eCollection 2021. PMID: 34760358; PMCID: PMC8567853.
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Molecular Hydrogen: Is This a Viable New Treatment for Plants in the UK?.

Plants (Basel, Switzerland)

Hancock JT, LeBaron TW, May J, Thomas A, Russell G.
PMID: 34834633
Plants (Basel). 2021 Oct 22;10(11). doi: 10.3390/plants10112270.

Despite being trialed in other regions of the world, the use of molecular hydrogen (H

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Hancock JT, LeBaron TW, May J, et al. Molecular Hydrogen: Is This a Viable New Treatment for Plants in the UK?. Plants (Basel). 2021;10(11)doi: 10.3390/plants10112270.
Hancock, J. T., LeBaron, T. W., May, J., Thomas, A., & Russell, G. (2021). Molecular Hydrogen: Is This a Viable New Treatment for Plants in the UK?. Plants (Basel, Switzerland), 10(11), . https://doi.org/10.3390/plants10112270
Hancock, John T, et al. "Molecular Hydrogen: Is This a Viable New Treatment for Plants in the UK?." Plants (Basel, Switzerland) vol. 10,11 (2021). doi: https://doi.org/10.3390/plants10112270
Hancock JT, LeBaron TW, May J, Thomas A, Russell G. Molecular Hydrogen: Is This a Viable New Treatment for Plants in the UK?. Plants (Basel). 2021 Oct 22;10(11). doi: 10.3390/plants10112270. PMID: 34834633; PMCID: PMC8618766.
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Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?.

FEMS microbiology ecology

Servais P, Agogué H, Courties C, Joux F, Lebaron P.
PMID: 11295456
FEMS Microbiol Ecol. 2001 Apr;35(2):171-179. doi: 10.1111/j.1574-6941.2001.tb00801.x.

The 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) staining method is commonly and increasingly used to detect and to enumerate actively respiring cells (CTC+ cells) in aquatic systems. However, this method remains controversial since some authors promote this technique while others pointed...

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Servais P, Agogué H, Courties C, et al. Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?. FEMS Microbiol Ecol. 2001;35(2):171-179doi: 10.1111/j.1574-6941.2001.tb00801.x.
Servais, P., Agogué, H., Courties, C., Joux, F., & Lebaron, P. (2001). Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?. FEMS microbiology ecology, 35(2), 171-179. https://doi.org/10.1111/j.1574-6941.2001.tb00801.x
Servais, P, et al. "Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?." FEMS microbiology ecology vol. 35,2 (2001): 171-179. doi: https://doi.org/10.1111/j.1574-6941.2001.tb00801.x
Servais P, Agogué H, Courties C, Joux F, Lebaron P. Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?. FEMS Microbiol Ecol. 2001 Apr;35(2):171-179. doi: 10.1111/j.1574-6941.2001.tb00801.x. PMID: 11295456.
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Showing 1 to 12 of 76 entries