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Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

Genome medicine

O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ.
PMID: 23537139
Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013.

BACKGROUND: To facilitate the clinical implementation of genomic medicine by next-generation sequencing, it will be critically important to obtain accurate and consistent variant calls on personal genomes. Multiple software tools for variant calling are available, but it is unclear...

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O'Rawe J, Jiang T, Sun G, et al. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 2013;5(3):28doi: 10.1186/gm432.
O'Rawe, J., Jiang, T., Sun, G., Wu, Y., Wang, W., Hu, J., Bodily, P., Tian, L., Hakonarson, H., Johnson, W. E., Wei, Z., Wang, K., & Lyon, G. J. (2013). Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome medicine, 5(3), 28. https://doi.org/10.1186/gm432
O'Rawe, Jason, et al. "Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing." Genome medicine vol. 5,3 (2013): 28. doi: https://doi.org/10.1186/gm432
O'Rawe J, Jiang T, Sun G, Wu Y, Wang W, Hu J, Bodily P, Tian L, Hakonarson H, Johnson WE, Wei Z, Wang K, Lyon GJ. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 2013 Mar 27;5(3):28. doi: 10.1186/gm432. eCollection 2013. PMID: 23537139; PMCID: PMC3706896.
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An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake.

Traffic (Copenhagen, Denmark)

Kee AJ, Yang L, Lucas CA, Greenberg MJ, Martel N, Leong GM, Hughes WE, Cooney GJ, James DE, Ostap EM, Han W, Gunning PW, Hardeman EC.
PMID: 26688443
Traffic. 2016 Jan;17(1):80-1. doi: 10.1111/tra.12342.

No abstract available.

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Kee AJ, Yang L, Lucas CA, et al. An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake. Traffic. 2016;17(1):80-1doi: 10.1111/tra.12342.
Kee, A. J., Yang, L., Lucas, C. A., Greenberg, M. J., Martel, N., Leong, G. M., Hughes, W. E., Cooney, G. J., James, D. E., Ostap, E. M., Han, W., Gunning, P. W., & Hardeman, E. C. (2016). An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake. Traffic (Copenhagen, Denmark), 17(1), 80-1. https://doi.org/10.1111/tra.12342
Kee, Anthony J, et al. "An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake." Traffic (Copenhagen, Denmark) vol. 17,1 (2016): 80-1. doi: https://doi.org/10.1111/tra.12342
Kee AJ, Yang L, Lucas CA, Greenberg MJ, Martel N, Leong GM, Hughes WE, Cooney GJ, James DE, Ostap EM, Han W, Gunning PW, Hardeman EC. An Actin Filament Population Defined by the Tropomyosin Tpm3.1 Regulates Glucose Uptake. Traffic. 2016 Jan;17(1):80-1. doi: 10.1111/tra.12342. PMID: 26688443; PMCID: PMC6886021.
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The Epidemiology of Chronic Digestive Disease.

Acta clinica Belgica

Fiasse R, Verwilghen RL, Vandepitte J, Pjrson Y, Lyon G.
PMID: 27192664
Acta Clin Belg. 1982 Jan;37(2):124-7. doi: 10.1080/22953337.1982.11718853.

No abstract available.

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Fiasse R, Verwilghen RL, Vandepitte J, et al. The Epidemiology of Chronic Digestive Disease. Acta Clin Belg. 1982;37(2):124-7doi: 10.1080/22953337.1982.11718853.
Fiasse, R., Verwilghen, R. L., Vandepitte, J., Pjrson, Y., & Lyon, G. (1982). The Epidemiology of Chronic Digestive Disease. Acta clinica Belgica, 37(2), 124-7. https://doi.org/10.1080/22953337.1982.11718853
Fiasse, R, et al. "The Epidemiology of Chronic Digestive Disease." Acta clinica Belgica vol. 37,2 (1982): 124-7. doi: https://doi.org/10.1080/22953337.1982.11718853
Fiasse R, Verwilghen RL, Vandepitte J, Pjrson Y, Lyon G. The Epidemiology of Chronic Digestive Disease. Acta Clin Belg. 1982 Jan;37(2):124-7. doi: 10.1080/22953337.1982.11718853. PMID: 27192664.
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Enhancing inferential abilities in adolescence: new hope for students in poverty.

Frontiers in human neuroscience

Gamino JF, Motes MM, Riddle R, Lyon GR, Spence JS, Chapman SB.
PMID: 25505393
Front Hum Neurosci. 2014 Dec 09;8:924. doi: 10.3389/fnhum.2014.00924. eCollection 2014.

The ability to extrapolate essential gist through the analysis and synthesis of information, prediction of potential outcomes, abstraction of ideas, and integration of relationships with world knowledge is critical for higher-order learning. The present study investigated the efficacy of...

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Gamino JF, Motes MM, Riddle R, et al. Enhancing inferential abilities in adolescence: new hope for students in poverty. Front Hum Neurosci. 2014;8:924doi: 10.3389/fnhum.2014.00924.
Gamino, J. F., Motes, M. M., Riddle, R., Lyon, G. R., Spence, J. S., & Chapman, S. B. (2014). Enhancing inferential abilities in adolescence: new hope for students in poverty. Frontiers in human neuroscience, 8924. https://doi.org/10.3389/fnhum.2014.00924
Gamino, Jacquelyn F, et al. "Enhancing inferential abilities in adolescence: new hope for students in poverty." Frontiers in human neuroscience vol. 8 (2014): 924. doi: https://doi.org/10.3389/fnhum.2014.00924
Gamino JF, Motes MM, Riddle R, Lyon GR, Spence JS, Chapman SB. Enhancing inferential abilities in adolescence: new hope for students in poverty. Front Hum Neurosci. 2014 Dec 09;8:924. doi: 10.3389/fnhum.2014.00924. eCollection 2014. PMID: 25505393; PMCID: PMC4243561.
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Corrigendum: Protection against malaria at 1 year and immune correlates following PfSPZ vaccination.

Nature medicine

Ishizuka AS, Lyke KE, DeZure A, Berry AA, Richie TL, Mendoza FH, Enama ME, Gordon IJ, Chang LJ, Sarwar UN, Zephir KL, Holman LA, James ER, Billingsley PF, Gunasekera A, Chakravarty S, Manoj A, Li M, Ruben AJ, Li T, Eappen AG, Stafford RE, K C N, Murshedkar T, DeCederfelt H, Plummer SH, Hendel CS, Novik L, Costner PJ, Saunders JG, Laurens MB, Plowe CV, Flynn B, Whalen WR, Todd JP, Noor J, Rao S, Sierra-Davidson K, Lynn GM, Epstein JE, Kemp MA, Fahle GA, Mikolajczak SA, Fishbaugher M, Sack BK, Kappe SH, Davidson SA, Garver LS, Björkström NK, Nason MC, Graham BS, Roederer M, Sim BK, Hoffman SL, Ledgerwood JE, Seder RA.
PMID: 27270781
Nat Med. 2016 Jun 07;22(6):692. doi: 10.1038/nm0616-692c.

No abstract available.

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Ishizuka AS, Lyke KE, DeZure A, et al. Corrigendum: Protection against malaria at 1 year and immune correlates following PfSPZ vaccination. Nat Med. 2016;22(6):692doi: 10.1038/nm0616-692c.
Ishizuka, A. S., Lyke, K. E., DeZure, A., Berry, A. A., Richie, T. L., Mendoza, F. H., Enama, M. E., Gordon, I. J., Chang, L. J., Sarwar, U. N., Zephir, K. L., Holman, L. A., James, E. R., Billingsley, P. F., Gunasekera, A., Chakravarty, S., Manoj, A., Li, M., Ruben, A. J., Li, T., Eappen, A. G., Stafford, R. E., K C, N., Murshedkar, T., DeCederfelt, H., Plummer, S. H., Hendel, C. S., Novik, L., Costner, P. J., Saunders, J. G., Laurens, M. B., Plowe, C. V., Flynn, B., Whalen, W. R., Todd, J. P., Noor, J., Rao, S., Sierra-Davidson, K., Lynn, G. M., Epstein, J. E., Kemp, M. A., Fahle, G. A., Mikolajczak, S. A., Fishbaugher, M., Sack, B. K., Kappe, S. H., Davidson, S. A., Garver, L. S., Björkström, N. K., Nason, M. C., Graham, B. S., Roederer, M., Sim, B. K., Hoffman, S. L., Ledgerwood, J. E., Seder, R. A. (2016). Corrigendum: Protection against malaria at 1 year and immune correlates following PfSPZ vaccination. Nature medicine, 22(6), 692. https://doi.org/10.1038/nm0616-692c
Ishizuka, Andrew S, et al. "Corrigendum: Protection against malaria at 1 year and immune correlates following PfSPZ vaccination." Nature medicine vol. 22,6 (2016): 692. doi: https://doi.org/10.1038/nm0616-692c
Ishizuka AS, Lyke KE, DeZure A, Berry AA, Richie TL, Mendoza FH, Enama ME, Gordon IJ, Chang LJ, Sarwar UN, Zephir KL, Holman LA, James ER, Billingsley PF, Gunasekera A, Chakravarty S, Manoj A, Li M, Ruben AJ, Li T, Eappen AG, Stafford RE, K C N, Murshedkar T, DeCederfelt H, Plummer SH, Hendel CS, Novik L, Costner PJ, Saunders JG, Laurens MB, Plowe CV, Flynn B, Whalen WR, Todd JP, Noor J, Rao S, Sierra-Davidson K, Lynn GM, Epstein JE, Kemp MA, Fahle GA, Mikolajczak SA, Fishbaugher M, Sack BK, Kappe SH, Davidson SA, Garver LS, Björkström NK, Nason MC, Graham BS, Roederer M, Sim BK, Hoffman SL, Ledgerwood JE, Seder RA. Corrigendum: Protection against malaria at 1 year and immune correlates following PfSPZ vaccination. Nat Med. 2016 Jun 07;22(6):692. doi: 10.1038/nm0616-692c. PMID: 27270781.
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Cretaceous sauropods from the sahara and the uneven rate of skeletal evolution among dinosaurs.

Science (New York, N.Y.)

Sereno PC, Beck AL, Dutheil DB, Larsson HC, Lyon GH, Moussa B, Sadleir RW, Sidor CA, Varricchio DJ, Wilson GP, Wilson JA.
PMID: 10558986
Science. 1999 Nov 12;286(5443):1342-7. doi: 10.1126/science.286.5443.1342.

Lower Cretaceous fossils from central Niger document the succession of sauropod dinosaurs on Africa as it drifted into geographic isolation. A new broad-toothed genus of Neocomian age ( approximately 135 million years ago) shows few of the specializations of...

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Sereno PC, Beck AL, Dutheil DB, et al. Cretaceous sauropods from the sahara and the uneven rate of skeletal evolution among dinosaurs. Science. 1999;286(5443):1342-7doi: 10.1126/science.286.5443.1342.
Sereno, P. C., Beck, A. L., Dutheil, D. B., Larsson, H. C., Lyon, G. H., Moussa, B., Sadleir, R. W., Sidor, C. A., Varricchio, D. J., Wilson, G. P., & Wilson, J. A. (1999). Cretaceous sauropods from the sahara and the uneven rate of skeletal evolution among dinosaurs. Science (New York, N.Y.), 286(5443), 1342-7. https://doi.org/10.1126/science.286.5443.1342
Sereno, et al. "Cretaceous sauropods from the sahara and the uneven rate of skeletal evolution among dinosaurs." Science (New York, N.Y.) vol. 286,5443 (1999): 1342-7. doi: https://doi.org/10.1126/science.286.5443.1342
Sereno PC, Beck AL, Dutheil DB, Larsson HC, Lyon GH, Moussa B, Sadleir RW, Sidor CA, Varricchio DJ, Wilson GP, Wilson JA. Cretaceous sauropods from the sahara and the uneven rate of skeletal evolution among dinosaurs. Science. 1999 Nov 12;286(5443):1342-7. doi: 10.1126/science.286.5443.1342. PMID: 10558986.
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Host-Pathogen Interactions : XXV. Endopolygalacturonic Acid Lyase from Erwinia carotovora Elicits Phytoalexin Accumulation by Releasing Plant Cell Wall Fragments.

Plant physiology

Davis KR, Lyon GD, Darvill AG, Albersheim P.
PMID: 16663385
Plant Physiol. 1984 Jan;74(1):52-60. doi: 10.1104/pp.74.1.52.

Heat-labile elicitors of phytoalexin accumulation in soybeans (Glycine max L. Merr. cv Wayne) were detected in culture filtrates of Erwinia carotovora grown on a defined medium containing citrus pectin as the sole carbon source. The heat-labile elicitors were highly...

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Davis KR, Lyon GD, Darvill AG, et al. Host-Pathogen Interactions : XXV. Endopolygalacturonic Acid Lyase from Erwinia carotovora Elicits Phytoalexin Accumulation by Releasing Plant Cell Wall Fragments. Plant Physiol. 1984;74(1):52-60doi: 10.1104/pp.74.1.52.
Davis, K. R., Lyon, G. D., Darvill, A. G., & Albersheim, P. (1984). Host-Pathogen Interactions : XXV. Endopolygalacturonic Acid Lyase from Erwinia carotovora Elicits Phytoalexin Accumulation by Releasing Plant Cell Wall Fragments. Plant physiology, 74(1), 52-60. https://doi.org/10.1104/pp.74.1.52
Davis, K R, et al. "Host-Pathogen Interactions : XXV. Endopolygalacturonic Acid Lyase from Erwinia carotovora Elicits Phytoalexin Accumulation by Releasing Plant Cell Wall Fragments." Plant physiology vol. 74,1 (1984): 52-60. doi: https://doi.org/10.1104/pp.74.1.52
Davis KR, Lyon GD, Darvill AG, Albersheim P. Host-Pathogen Interactions : XXV. Endopolygalacturonic Acid Lyase from Erwinia carotovora Elicits Phytoalexin Accumulation by Releasing Plant Cell Wall Fragments. Plant Physiol. 1984 Jan;74(1):52-60. doi: 10.1104/pp.74.1.52. PMID: 16663385; PMCID: PMC1066623.
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A Dutch Beilstein assessed.

Manufacturing chemist and aerosol news

DYSON GM.
PMID: 18880806
Manuf Chem Aerosol News. 1948 Jul;19(7):317.

No abstract available.

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DYSON GM. A Dutch Beilstein assessed. Manuf Chem Aerosol News. 1948;19(7):317
DYSON, G. M. (1948). A Dutch Beilstein assessed. Manufacturing chemist and aerosol news, 19(7), 317.
DYSON, G M. "A Dutch Beilstein assessed." Manufacturing chemist and aerosol news vol. 19,7 (1948): 317.
DYSON GM. A Dutch Beilstein assessed. Manuf Chem Aerosol News. 1948 Jul;19(7):317. PMID: 18880806.
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ALIMENTARY PARASITES OF FELIS DOMESTICA.

Science (New York, N.Y.)

Lyon GA.
PMID: 17809881
Science. 1906 Sep 07;24(610):313-4. doi: 10.1126/science.24.610.313.

No abstract available.

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Lyon GA. ALIMENTARY PARASITES OF FELIS DOMESTICA. Science. 1906;24(610):313-4doi: 10.1126/science.24.610.313.
Lyon, G. A. (1906). ALIMENTARY PARASITES OF FELIS DOMESTICA. Science (New York, N.Y.), 24(610), 313-4. https://doi.org/10.1126/science.24.610.313
Lyon, G A. "ALIMENTARY PARASITES OF FELIS DOMESTICA." Science (New York, N.Y.) vol. 24,610 (1906): 313-4. doi: https://doi.org/10.1126/science.24.610.313
Lyon GA. ALIMENTARY PARASITES OF FELIS DOMESTICA. Science. 1906 Sep 07;24(610):313-4. doi: 10.1126/science.24.610.313. PMID: 17809881.
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Interviewing technics.

American practitioner and digest of treatment

LYON JM.
PMID: 20286846
Am Pract Dig Treat. 1946 Dec;1(4):174-8.

No abstract available.

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LYON JM. Interviewing technics. Am Pract Dig Treat. 1946;1(4):174-8
LYON, J. M. (1946). Interviewing technics. American practitioner and digest of treatment, 1(4), 174-8.
LYON, J M. "Interviewing technics." American practitioner and digest of treatment vol. 1,4 (1946): 174-8.
LYON JM. Interviewing technics. Am Pract Dig Treat. 1946 Dec;1(4):174-8. PMID: 20286846.
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Tourette's Disorder.

Current treatment options in neurology

Lyon GJ, Shprecher D, Coffey B, Kurlan R.
PMID: 20842587
Curr Treat Options Neurol. 2010 Jul;12(4):274-86. doi: 10.1007/s11940-010-0073-x.

OPINION STATEMENT: Tourette's disorder (TD) is a common childhood-onset neuropsychiatric disorder characterized by chronic motor and vocal tics. TD frequently occurs with other neuropsychiatric disorders, such as attention deficit hyperactivity disorder (ADHD) and obsessive-compulsive disorder (OCD), and may contribute...

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Lyon GJ, Shprecher D, Coffey B, et al. Tourette's Disorder. Curr Treat Options Neurol. 2010;12(4):274-86doi: 10.1007/s11940-010-0073-x.
Lyon, G. J., Shprecher, D., Coffey, B., & Kurlan, R. (2010). Tourette's Disorder. Current treatment options in neurology, 12(4), 274-86. https://doi.org/10.1007/s11940-010-0073-x
Lyon, Gholson J, et al. "Tourette's Disorder." Current treatment options in neurology vol. 12,4 (2010): 274-86. doi: https://doi.org/10.1007/s11940-010-0073-x
Lyon GJ, Shprecher D, Coffey B, Kurlan R. Tourette's Disorder. Curr Treat Options Neurol. 2010 Jul;12(4):274-86. doi: 10.1007/s11940-010-0073-x. PMID: 20842587.
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Vitamin D concentrations among healthy children in Calgary, Alberta.

Paediatrics & child health

Stoian CA, Lyon M, Cox RG, Stephure DK, Mah JK.
PMID: 22294867
Paediatr Child Health. 2011 Feb;16(2):82-6. doi: 10.1093/pch/16.2.82.

OBJECTIVE: To examine the relationship between serum vitamin D concentrations, dietary intake and body mass index among healthy children living in Calgary, Alberta.METHODS: The present cross-sectional study included healthy children two to 13 years of age who presented to...

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Stoian CA, Lyon M, Cox RG, et al. Vitamin D concentrations among healthy children in Calgary, Alberta. Paediatr Child Health. 2011;16(2):82-6doi: 10.1093/pch/16.2.82.
Stoian, C. A., Lyon, M., Cox, R. G., Stephure, D. K., & Mah, J. K. (2011). Vitamin D concentrations among healthy children in Calgary, Alberta. Paediatrics & child health, 16(2), 82-6. https://doi.org/10.1093/pch/16.2.82
Stoian, Cristina A, et al. "Vitamin D concentrations among healthy children in Calgary, Alberta." Paediatrics & child health vol. 16,2 (2011): 82-6. doi: https://doi.org/10.1093/pch/16.2.82
Stoian CA, Lyon M, Cox RG, Stephure DK, Mah JK. Vitamin D concentrations among healthy children in Calgary, Alberta. Paediatr Child Health. 2011 Feb;16(2):82-6. doi: 10.1093/pch/16.2.82. PMID: 22294867; PMCID: PMC3043039.
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Showing 1 to 12 of 232 entries