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Stochastic methods for aerosol chemistry: a compact molecular description of functionalization and fragmentation in the heterogeneous oxidation of squalane aerosol by OH radicals.

Physical chemistry chemical physics : PCCP

Wiegel AA, Wilson KR, Hinsberg WD, Houle FA.
PMID: 25578323
Phys Chem Chem Phys. 2015 Feb 14;17(6):4398-411. doi: 10.1039/c4cp04927f.

The heterogeneous oxidation of organic aerosol by hydroxyl radicals (OH) can proceed through two general pathways: functionalization, in which oxygen functional groups are added to the carbon skeleton, and fragmentation, in which carbon-carbon bonds are broken, producing higher volatility,...

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Wiegel AA, Wilson KR, Hinsberg WD, et al. Stochastic methods for aerosol chemistry: a compact molecular description of functionalization and fragmentation in the heterogeneous oxidation of squalane aerosol by OH radicals. Phys Chem Chem Phys. 2015;17(6):4398-411doi: 10.1039/c4cp04927f.
Wiegel, A. A., Wilson, K. R., Hinsberg, W. D., & Houle, F. A. (2015). Stochastic methods for aerosol chemistry: a compact molecular description of functionalization and fragmentation in the heterogeneous oxidation of squalane aerosol by OH radicals. Physical chemistry chemical physics : PCCP, 17(6), 4398-411. https://doi.org/10.1039/c4cp04927f
Wiegel, A A, et al. "Stochastic methods for aerosol chemistry: a compact molecular description of functionalization and fragmentation in the heterogeneous oxidation of squalane aerosol by OH radicals." Physical chemistry chemical physics : PCCP vol. 17,6 (2015): 4398-411. doi: https://doi.org/10.1039/c4cp04927f
Wiegel AA, Wilson KR, Hinsberg WD, Houle FA. Stochastic methods for aerosol chemistry: a compact molecular description of functionalization and fragmentation in the heterogeneous oxidation of squalane aerosol by OH radicals. Phys Chem Chem Phys. 2015 Feb 14;17(6):4398-411. doi: 10.1039/c4cp04927f. PMID: 25578323.
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microRNA are Central Players in Anti- and Profibrotic Gene Regulation during Liver Fibrosis.

Frontiers in physiology

Noetel A, Kwiecinski M, Elfimova N, Huang J, Odenthal M.
PMID: 22457651
Front Physiol. 2012 Mar 19;3:49. doi: 10.3389/fphys.2012.00049. eCollection 2012.

MicroRNA (miRNA) are small non-coding RNA molecules that posttranscriptionally effect mRNA stability and translation by targeting the 3'-untranslated region (3'-UTR) of various transcripts. Thus, dysregulation of miRNA affects a wide range of cellular processes such as cell proliferation and...

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Noetel A, Kwiecinski M, Elfimova N, et al. microRNA are Central Players in Anti- and Profibrotic Gene Regulation during Liver Fibrosis. Front Physiol. 2012;3:49doi: 10.3389/fphys.2012.00049.
Noetel, A., Kwiecinski, M., Elfimova, N., Huang, J., & Odenthal, M. (2012). microRNA are Central Players in Anti- and Profibrotic Gene Regulation during Liver Fibrosis. Frontiers in physiology, 349. https://doi.org/10.3389/fphys.2012.00049
Noetel, Andrea, et al. "microRNA are Central Players in Anti- and Profibrotic Gene Regulation during Liver Fibrosis." Frontiers in physiology vol. 3 (2012): 49. doi: https://doi.org/10.3389/fphys.2012.00049
Noetel A, Kwiecinski M, Elfimova N, Huang J, Odenthal M. microRNA are Central Players in Anti- and Profibrotic Gene Regulation during Liver Fibrosis. Front Physiol. 2012 Mar 19;3:49. doi: 10.3389/fphys.2012.00049. eCollection 2012. PMID: 22457651; PMCID: PMC3307137.
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The non-statistical dynamics of the ¹⁸O + ³²O₂ isotope exchange reaction at two energies.

The Journal of chemical physics

Van Wyngarden AL, Mar KA, Quach J, Nguyen AP, Wiegel AA, Lin SY, Lendvay G, Guo H, Lin JJ, Lee YT, Boering KA.
PMID: 25134575
J Chem Phys. 2014 Aug 14;141(6):064311. doi: 10.1063/1.4892346.

The dynamics of the (18)O((3)P) + (32)O2 isotope exchange reaction were studied using crossed atomic and molecular beams at collision energies (E(coll)) of 5.7 and 7.3 kcal/mol, and experimental results were compared with quantum statistical (QS) and quasi-classical trajectory...

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Van Wyngarden AL, Mar KA, Quach J, et al. The non-statistical dynamics of the ¹⁸O + ³²O₂ isotope exchange reaction at two energies. J Chem Phys. 2014;141(6):064311doi: 10.1063/1.4892346.
Van Wyngarden, A. L., Mar, K. A., Quach, J., Nguyen, A. P., Wiegel, A. A., Lin, S. Y., Lendvay, G., Guo, H., Lin, J. J., Lee, Y. T., & Boering, K. A. (2014). The non-statistical dynamics of the ¹⁸O + ³²O₂ isotope exchange reaction at two energies. The Journal of chemical physics, 141(6), 064311. https://doi.org/10.1063/1.4892346
Van Wyngarden, Annalise L, et al. "The non-statistical dynamics of the ¹⁸O + ³²O₂ isotope exchange reaction at two energies." The Journal of chemical physics vol. 141,6 (2014): 064311. doi: https://doi.org/10.1063/1.4892346
Van Wyngarden AL, Mar KA, Quach J, Nguyen AP, Wiegel AA, Lin SY, Lendvay G, Guo H, Lin JJ, Lee YT, Boering KA. The non-statistical dynamics of the ¹⁸O + ³²O₂ isotope exchange reaction at two energies. J Chem Phys. 2014 Aug 14;141(6):064311. doi: 10.1063/1.4892346. PMID: 25134575.
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Erratum to: Ablation of cyclase-associated protein 2 (CAP2) leads to cardiomyopathy.

Cellular and molecular life sciences : CMLS

Peche VS, Holak TA, Burgute BD, Kosmas K, Kale SP, Wunderlich FT, Elhamine F, Stehle R, Pfitzer G, Nohroudi K, Addicks K, Stöckigt F, Schrickel JW, Gallinger J, Schleicher M, Noegel AA.
PMID: 28852764
Cell Mol Life Sci. 2017 Nov;74(21):4045. doi: 10.1007/s00018-017-2630-x.

No abstract available.

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Peche VS, Holak TA, Burgute BD, et al. Erratum to: Ablation of cyclase-associated protein 2 (CAP2) leads to cardiomyopathy. Cell Mol Life Sci. 2017;74(21):4045doi: 10.1007/s00018-017-2630-x.
Peche, V. S., Holak, T. A., Burgute, B. D., Kosmas, K., Kale, S. P., Wunderlich, F. T., Elhamine, F., Stehle, R., Pfitzer, G., Nohroudi, K., Addicks, K., Stöckigt, F., Schrickel, J. W., Gallinger, J., Schleicher, M., & Noegel, A. A. (2017). Erratum to: Ablation of cyclase-associated protein 2 (CAP2) leads to cardiomyopathy. Cellular and molecular life sciences : CMLS, 74(21), 4045. https://doi.org/10.1007/s00018-017-2630-x
Peche, Vivek S, et al. "Erratum to: Ablation of cyclase-associated protein 2 (CAP2) leads to cardiomyopathy." Cellular and molecular life sciences : CMLS vol. 74,21 (2017): 4045. doi: https://doi.org/10.1007/s00018-017-2630-x
Peche VS, Holak TA, Burgute BD, Kosmas K, Kale SP, Wunderlich FT, Elhamine F, Stehle R, Pfitzer G, Nohroudi K, Addicks K, Stöckigt F, Schrickel JW, Gallinger J, Schleicher M, Noegel AA. Erratum to: Ablation of cyclase-associated protein 2 (CAP2) leads to cardiomyopathy. Cell Mol Life Sci. 2017 Nov;74(21):4045. doi: 10.1007/s00018-017-2630-x. PMID: 28852764.
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A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome.

Clinical genetics

Kaygusuz E, Khayyat AIA, Abdullah U, Budde BS, Asif M, Ahmed I, Makhdoom EUH, Sur-Erdem I, Baig JM, Khan MMA, Toliat MR, Becker C, Anwar H, Iqbal M, Fischer S, Jameel M, Sher M, Tariq M, Malik NA, Noegel AA, Hassan MJ, Thiele H, Tinschert S, Eichinger L, Höning S, Baig SM, Nürnberg P, Hussain MS.
PMID: 34270086
Clin Genet. 2021 Oct;100(4):486-488. doi: 10.1111/cge.14028. Epub 2021 Jul 16.

Jawad syndrome is a multiple congenital anomaly and intellectual disability syndrome with mutation in RBBP8 reported only in two families. Here, we report on two new families from Pakistan and identified a previously reported variant in RBBP8, NM_002894.3:c.1808-1809delTA. We...

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Kaygusuz E, Khayyat AIA, Abdullah U, et al. A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome. Clin Genet. 2021;100(4):486-488doi: 10.1111/cge.14028.
Kaygusuz, E., Khayyat, A. I. A., Abdullah, U., Budde, B. S., Asif, M., Ahmed, I., Makhdoom, E. U. H., Sur-Erdem, I., Baig, J. M., Khan, M. M. A., Toliat, M. R., Becker, C., Anwar, H., Iqbal, M., Fischer, S., Jameel, M., Sher, M., Tariq, M., Malik, N. A., Noegel, A. A., Hassan, M. J., Thiele, H., Tinschert, S., Eichinger, L., Höning, S., Baig, S. M., Nürnberg, P., & Hussain, M. S. (2021). A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome. Clinical genetics, 100(4), 486-488. https://doi.org/10.1111/cge.14028
Kaygusuz, Emrah, et al. "A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome." Clinical genetics vol. 100,4 (2021): 486-488. doi: https://doi.org/10.1111/cge.14028
Kaygusuz E, Khayyat AIA, Abdullah U, Budde BS, Asif M, Ahmed I, Makhdoom EUH, Sur-Erdem I, Baig JM, Khan MMA, Toliat MR, Becker C, Anwar H, Iqbal M, Fischer S, Jameel M, Sher M, Tariq M, Malik NA, Noegel AA, Hassan MJ, Thiele H, Tinschert S, Eichinger L, Höning S, Baig SM, Nürnberg P, Hussain MS. A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome. Clin Genet. 2021 Oct;100(4):486-488. doi: 10.1111/cge.14028. Epub 2021 Jul 16. PMID: 34270086.
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Small GTP-Binding Proteins of the Rho Family in the Dictyostelium Cytoskeleton.

Protist

Rivero F, Noegel AA.
PMID: 23196108
Protist. 1998 Feb;149(1):11-5. doi: 10.1016/S1434-4610(98)70004-5. Epub 2009 Jul 13.

No abstract available.

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Rivero F, Noegel AA. Small GTP-Binding Proteins of the Rho Family in the Dictyostelium Cytoskeleton. Protist. 2009;149(1):11-5doi: 10.1016/S1434-4610(98)70004-5.
Rivero, F., & Noegel, A. A. (1998). Small GTP-Binding Proteins of the Rho Family in the Dictyostelium Cytoskeleton. Protist, 149(1), 11-5. https://doi.org/10.1016/S1434-4610(98)70004-5
Rivero, F, and Noegel, A A. "Small GTP-Binding Proteins of the Rho Family in the Dictyostelium Cytoskeleton." Protist vol. 149,1 (1998): 11-5. doi: https://doi.org/10.1016/S1434-4610(98)70004-5
Rivero F, Noegel AA. Small GTP-Binding Proteins of the Rho Family in the Dictyostelium Cytoskeleton. Protist. 1998 Feb;149(1):11-5. doi: 10.1016/S1434-4610(98)70004-5. Epub 2009 Jul 13. PMID: 23196108.
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Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas.

Genome research

Kjellin J, Avesson L, Reimegård J, Liao Z, Eichinger L, Noegel A, Glöckner G, Schaap P, Söderbom F.
PMID: 33479022
Genome Res. 2021 Mar;31(3):436-447. doi: 10.1101/gr.272856.120. Epub 2021 Jan 21.

Aggregative multicellularity has evolved multiple times in diverse groups of eukaryotes, exemplified by the well-studied development of dictyostelid social amoebas, for example,

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Kjellin J, Avesson L, Reimegård J, et al. Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas. Genome Res. 2021;31(3):436-447doi: 10.1101/gr.272856.120.
Kjellin, J., Avesson, L., Reimegård, J., Liao, Z., Eichinger, L., Noegel, A., Glöckner, G., Schaap, P., & Söderbom, F. (2021). Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas. Genome research, 31(3), 436-447. https://doi.org/10.1101/gr.272856.120
Kjellin, Jonas, et al. "Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas." Genome research vol. 31,3 (2021): 436-447. doi: https://doi.org/10.1101/gr.272856.120
Kjellin J, Avesson L, Reimegård J, Liao Z, Eichinger L, Noegel A, Glöckner G, Schaap P, Söderbom F. Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas. Genome Res. 2021 Mar;31(3):436-447. doi: 10.1101/gr.272856.120. Epub 2021 Jan 21. PMID: 33479022; PMCID: PMC7919456.
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Correlating Broadband Photoluminescence with Structural Dynamics in Layered Hybrid Halide Perovskites.

Journal of the American Chemical Society

Koegel AA, Mozur EM, Oswald IWH, Jalarvo NH, Prisk TR, Tyagi M, Neilson JR.
PMID: 35029372
J Am Chem Soc. 2022 Jan 14; doi: 10.1021/jacs.1c11217. Epub 2022 Jan 14.

The emission of white light from a single material is atypical and is of interest for solid-state lighting applications. Broadband light emission has been observed in some layered perovskite derivatives,

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Koegel AA, Mozur EM, Oswald IWH, et al. Correlating Broadband Photoluminescence with Structural Dynamics in Layered Hybrid Halide Perovskites. J Am Chem Soc. 2022;doi: 10.1021/jacs.1c11217.
Koegel, A. A., Mozur, E. M., Oswald, I. W. H., Jalarvo, N. H., Prisk, T. R., Tyagi, M., & Neilson, J. R. (2022). Correlating Broadband Photoluminescence with Structural Dynamics in Layered Hybrid Halide Perovskites. Journal of the American Chemical Society, . https://doi.org/10.1021/jacs.1c11217
Koegel, Alexandra A, et al. "Correlating Broadband Photoluminescence with Structural Dynamics in Layered Hybrid Halide Perovskites." Journal of the American Chemical Society vol. (2022). doi: https://doi.org/10.1021/jacs.1c11217
Koegel AA, Mozur EM, Oswald IWH, Jalarvo NH, Prisk TR, Tyagi M, Neilson JR. Correlating Broadband Photoluminescence with Structural Dynamics in Layered Hybrid Halide Perovskites. J Am Chem Soc. 2022 Jan 14; doi: 10.1021/jacs.1c11217. Epub 2022 Jan 14. PMID: 35029372.
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A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome.

Clinical genetics

Kaygusuz E, Khayyat AIA, Abdullah U, Budde BS, Asif M, Ahmed I, Makhdoom EUH, Sur-Erdem I, Baig JM, Khan MMA, Toliat MR, Becker C, Anwar H, Iqbal M, Fischer S, Jameel M, Sher M, Tariq M, Malik NA, Noegel AA, Hassan MJ, Thiele H, Tinschert S, Eichinger L, Höning S, Baig SM, Nürnberg P, Hussain MS.
PMID: 34270086
Clin Genet. 2021 Oct;100(4):486-488. doi: 10.1111/cge.14028. Epub 2021 Jul 16.

Jawad syndrome is a multiple congenital anomaly and intellectual disability syndrome with mutation in RBBP8 reported only in two families. Here, we report on two new families from Pakistan and identified a previously reported variant in RBBP8, NM_002894.3:c.1808-1809delTA. We...

Cite
Kaygusuz E, Khayyat AIA, Abdullah U, et al. A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome. Clin Genet. 2021;100(4):486-488doi: 10.1111/cge.14028.
Kaygusuz, E., Khayyat, A. I. A., Abdullah, U., Budde, B. S., Asif, M., Ahmed, I., Makhdoom, E. U. H., Sur-Erdem, I., Baig, J. M., Khan, M. M. A., Toliat, M. R., Becker, C., Anwar, H., Iqbal, M., Fischer, S., Jameel, M., Sher, M., Tariq, M., Malik, N. A., Noegel, A. A., Hassan, M. J., Thiele, H., Tinschert, S., Eichinger, L., Höning, S., Baig, S. M., Nürnberg, P., & Hussain, M. S. (2021). A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome. Clinical genetics, 100(4), 486-488. https://doi.org/10.1111/cge.14028
Kaygusuz, Emrah, et al. "A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome." Clinical genetics vol. 100,4 (2021): 486-488. doi: https://doi.org/10.1111/cge.14028
Kaygusuz E, Khayyat AIA, Abdullah U, Budde BS, Asif M, Ahmed I, Makhdoom EUH, Sur-Erdem I, Baig JM, Khan MMA, Toliat MR, Becker C, Anwar H, Iqbal M, Fischer S, Jameel M, Sher M, Tariq M, Malik NA, Noegel AA, Hassan MJ, Thiele H, Tinschert S, Eichinger L, Höning S, Baig SM, Nürnberg P, Hussain MS. A 24-generation-old founder mutation impairs splicing of RBBP8 in Pakistani families affected with Jawad syndrome. Clin Genet. 2021 Oct;100(4):486-488. doi: 10.1111/cge.14028. Epub 2021 Jul 16. PMID: 34270086.
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Meeting report: dicty 98: international dictyostelium meeting kloster irsee, Germany, august 23-28, 1998.

Protist

Noegel AA.
PMID: 23194712
Protist. 1998 Dec;149(4):299-301. doi: 10.1016/S1434-4610(98)70036-7. Epub 2009 Jul 13.

No abstract available.

Cite
Noegel AA. Meeting report: dicty 98: international dictyostelium meeting kloster irsee, Germany, august 23-28, 1998. Protist. 2009;149(4):299-301doi: 10.1016/S1434-4610(98)70036-7.
Noegel, A. A. (1998). Meeting report: dicty 98: international dictyostelium meeting kloster irsee, Germany, august 23-28, 1998. Protist, 149(4), 299-301. https://doi.org/10.1016/S1434-4610(98)70036-7
Noegel, A A. "Meeting report: dicty 98: international dictyostelium meeting kloster irsee, Germany, august 23-28, 1998." Protist vol. 149,4 (1998): 299-301. doi: https://doi.org/10.1016/S1434-4610(98)70036-7
Noegel AA. Meeting report: dicty 98: international dictyostelium meeting kloster irsee, Germany, august 23-28, 1998. Protist. 1998 Dec;149(4):299-301. doi: 10.1016/S1434-4610(98)70036-7. Epub 2009 Jul 13. PMID: 23194712.
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Diffusive confinement of free radical intermediates in the OH radical oxidation of semisolid aerosols.

Physical chemistry chemical physics : PCCP

Wiegel AA, Liu MJ, Hinsberg WD, Wilson KR, Houle FA.
PMID: 28218326
Phys Chem Chem Phys. 2017 Mar 01;19(9):6814-6830. doi: 10.1039/c7cp00696a.

Multiphase chemical reactions (gas + solid/liquid) involve a complex interplay between bulk and interface chemistry, diffusion, evaporation, and condensation. Reactions of atmospheric aerosols are an important example of this type of chemistry: the rich array of particle phase states...

Cite
Wiegel AA, Liu MJ, Hinsberg WD, et al. Diffusive confinement of free radical intermediates in the OH radical oxidation of semisolid aerosols. Phys Chem Chem Phys. 2017;19(9):6814-6830doi: 10.1039/c7cp00696a.
Wiegel, A. A., Liu, M. J., Hinsberg, W. D., Wilson, K. R., & Houle, F. A. (2017). Diffusive confinement of free radical intermediates in the OH radical oxidation of semisolid aerosols. Physical chemistry chemical physics : PCCP, 19(9), 6814-6830. https://doi.org/10.1039/c7cp00696a
Wiegel, Aaron A, et al. "Diffusive confinement of free radical intermediates in the OH radical oxidation of semisolid aerosols." Physical chemistry chemical physics : PCCP vol. 19,9 (2017): 6814-6830. doi: https://doi.org/10.1039/c7cp00696a
Wiegel AA, Liu MJ, Hinsberg WD, Wilson KR, Houle FA. Diffusive confinement of free radical intermediates in the OH radical oxidation of semisolid aerosols. Phys Chem Chem Phys. 2017 Mar 01;19(9):6814-6830. doi: 10.1039/c7cp00696a. PMID: 28218326.
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Aerosol Fragmentation Driven by Coupling of Acid-Base and Free-Radical Chemistry in the Heterogeneous Oxidation of Aqueous Citric Acid by OH Radicals.

The journal of physical chemistry. A

Liu MJ, Wiegel AA, Wilson KR, Houle FA.
PMID: 28707900
J Phys Chem A. 2017 Aug 10;121(31):5856-5870. doi: 10.1021/acs.jpca.7b04892. Epub 2017 Aug 01.

A key uncertainty in the heterogeneous oxidation of carboxylic acids by hydroxyl radicals (OH) in aqueous-phase aerosol is how the free-radical reaction pathways might be altered by acid-base chemistry. In particular, if acid-base reactions occur concurrently with acyloxy radical...

Cite
Liu MJ, Wiegel AA, Wilson KR, et al. Aerosol Fragmentation Driven by Coupling of Acid-Base and Free-Radical Chemistry in the Heterogeneous Oxidation of Aqueous Citric Acid by OH Radicals. J Phys Chem A. 2017;121(31):5856-5870doi: 10.1021/acs.jpca.7b04892.
Liu, M. J., Wiegel, A. A., Wilson, K. R., & Houle, F. A. (2017). Aerosol Fragmentation Driven by Coupling of Acid-Base and Free-Radical Chemistry in the Heterogeneous Oxidation of Aqueous Citric Acid by OH Radicals. The journal of physical chemistry. A, 121(31), 5856-5870. https://doi.org/10.1021/acs.jpca.7b04892
Liu, Matthew J, et al. "Aerosol Fragmentation Driven by Coupling of Acid-Base and Free-Radical Chemistry in the Heterogeneous Oxidation of Aqueous Citric Acid by OH Radicals." The journal of physical chemistry. A vol. 121,31 (2017): 5856-5870. doi: https://doi.org/10.1021/acs.jpca.7b04892
Liu MJ, Wiegel AA, Wilson KR, Houle FA. Aerosol Fragmentation Driven by Coupling of Acid-Base and Free-Radical Chemistry in the Heterogeneous Oxidation of Aqueous Citric Acid by OH Radicals. J Phys Chem A. 2017 Aug 10;121(31):5856-5870. doi: 10.1021/acs.jpca.7b04892. Epub 2017 Aug 01. PMID: 28707900.
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